Wall clock time and date at job start Tue Mar 31 2020 22:26:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.47166 * 2 1
4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3
5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1
6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2
7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4
8 8 N 1.46500 * 109.47299 * 179.97438 * 7 6 5
9 9 C 1.36936 * 120.00253 * 179.97438 * 8 7 6
10 10 H 1.07998 * 119.99879 * 0.02562 * 9 8 7
11 11 C 1.38813 * 120.00059 * 179.97438 * 9 8 7
12 12 N 1.31620 * 119.99776 * 0.02562 * 11 9 8
13 13 Si 1.86795 * 120.00106 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.47283 * 60.00046 * 13 11 9
15 15 H 1.48496 * 109.47115 * 180.02562 * 13 11 9
16 16 H 1.48501 * 109.46983 * 300.00420 * 13 11 9
17 17 N 1.46502 * 109.46969 * 240.00729 * 2 1 3
18 18 C 1.34773 * 120.00306 * 84.99801 * 17 2 1
19 19 O 1.21292 * 119.99815 * 0.02562 * 18 17 2
20 20 C 1.50694 * 120.00409 * 179.97438 * 18 17 2
21 21 O 1.42902 * 109.47725 * 179.97438 * 20 18 17
22 22 C 1.42892 * 114.00427 * 179.97438 * 21 20 18
23 23 C 1.50703 * 109.47507 * 180.02562 * 22 21 20
24 24 N 1.30500 * 125.65044 * 269.70057 * 23 22 21
25 25 C 1.34131 * 109.25652 * 179.88817 * 24 23 22
26 26 C 1.34670 * 108.02148 * 0.36633 * 25 24 23
27 27 N 1.35040 * 125.64787 * 89.99650 * 23 22 21
28 28 C 1.46504 * 126.40149 * 359.94942 * 27 23 22
29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3
30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3
31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3
32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1
33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1
34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2
35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2
36 36 H 1.09001 * 109.47194 * 299.99650 * 6 5 4
37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 4
38 38 H 1.09001 * 109.47109 * 299.99380 * 7 6 5
39 39 H 1.09002 * 109.47508 * 59.99571 * 7 6 5
40 40 H 0.97003 * 119.99983 * 359.97438 * 8 7 6
41 41 H 0.97005 * 119.99630 * 179.97438 * 12 11 9
42 42 H 0.97003 * 120.00235 * 265.00555 * 17 2 1
43 43 H 1.08997 * 109.47334 * 300.00478 * 20 18 17
44 44 H 1.09008 * 109.47061 * 60.00564 * 20 18 17
45 45 H 1.09004 * 109.47391 * 300.00054 * 22 21 20
46 46 H 1.08998 * 109.47411 * 60.00706 * 22 21 20
47 47 H 1.07998 * 125.98887 * 180.10921 * 25 24 23
48 48 H 1.07997 * 126.59607 * 179.74766 * 26 25 24
49 49 H 1.09005 * 109.46930 * 89.99507 * 28 27 23
50 50 H 1.09004 * 109.47114 * 209.99688 * 28 27 23
51 51 H 1.08994 * 109.46610 * 329.99970 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.6135 1.3135
6 6 4.0749 -1.3354 2.5623
7 6 5.5996 -1.2270 2.6270
8 7 6.0881 -1.9177 3.8231
9 6 7.4301 -1.9541 4.0927
10 1 8.1285 -1.4733 3.4239
11 6 7.8928 -2.6082 5.2263
12 7 7.0416 -3.1938 6.0417
13 14 9.7234 -2.6573 5.5945
14 1 10.2353 -1.2715 5.7460
15 1 9.9553 -3.4113 6.8526
16 1 10.4352 -3.3285 4.4773
17 7 2.0183 -0.6905 -1.1963
18 6 2.1470 -0.0181 -2.3572
19 8 1.8589 1.1589 -2.4114
20 6 2.6498 -0.7281 -3.5876
21 8 2.6972 0.1900 -4.6816
22 6 3.1637 -0.3854 -5.9035
23 6 3.1733 0.6664 -6.9827
24 7 2.1844 0.9367 -7.7902
25 6 2.5465 1.9295 -8.6162
26 6 3.8106 2.2825 -8.3143
27 7 4.2087 1.4815 -7.2781
28 6 5.5140 1.5047 -6.6133
29 1 -0.3634 0.5140 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.7516 -1.7716 1.2053
33 1 1.6054 -0.2620 2.1368
34 1 3.8532 0.4368 1.3572
35 1 3.9994 -1.0729 0.4257
36 1 3.6403 -0.8764 3.4503
37 1 3.7865 -2.3856 2.5181
38 1 6.0346 -1.6858 1.7391
39 1 5.8877 -0.1766 2.6714
40 1 5.4607 -2.3493 4.4241
41 1 7.3650 -3.6512 6.8337
42 1 2.2489 -1.6317 -1.1529
43 1 3.6491 -1.1200 -3.3981
44 1 1.9775 -1.5504 -3.8328
45 1 4.1740 -0.7694 -5.7620
46 1 2.5027 -1.2011 -6.1967
47 1 1.9335 2.3662 -9.3907
48 1 4.3976 3.0497 -8.7972
49 1 6.1918 0.8173 -7.1197
50 1 5.9238 2.5140 -6.6525
51 1 5.3975 1.1998 -5.5734
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001171437251.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:34
Heat of formation + Delta-G solvation = -47.350125 kcal
Electronic energy + Delta-G solvation = -28090.220522 eV
Core-core repulsion = 24024.809237 eV
Total energy + Delta-G solvation = -4065.411285 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-43.06046 -40.96338 -38.84351 -37.86726 -36.77368 -34.97521 -34.76939 -33.11730
-32.14498 -31.60034 -28.94252 -28.77497 -27.92778 -26.62706 -25.89365 -23.75606
-22.39635 -22.20377 -21.96799 -21.53369 -21.00309 -19.11623 -18.56833 -18.03135
-17.78061 -17.32229 -17.07069 -16.67628 -16.38246 -16.10174 -15.82861 -15.64436
-15.36280 -15.28430 -14.93606 -14.67507 -14.51956 -14.17116 -14.13759 -14.01864
-13.79162 -13.50794 -13.31719 -13.07361 -13.02417 -12.87906 -12.83235 -12.80330
-12.43990 -12.26076 -12.19331 -11.87270 -11.80347 -11.47049 -11.38712 -11.05368
-10.92224 -10.84949 -10.83882 -10.60861 -10.07931 -9.47548 -9.00603 -7.95874
-5.25064 0.86702 1.47014 1.50289 1.56663 1.60522 1.72476 1.91338
2.17931 2.55910 3.02255 3.37384 3.55061 3.62109 3.76074 3.84689
3.95131 4.04348 4.07668 4.15328 4.19079 4.24996 4.28550 4.35957
4.37673 4.38661 4.44010 4.55009 4.61842 4.66131 4.66300 4.76610
4.79407 4.89151 4.94156 5.00087 5.03659 5.13631 5.26702 5.28122
5.32732 5.45939 5.46650 5.54723 5.59138 5.77547 5.91046 6.16673
6.26811 6.59483 7.06284 7.27920 7.32618 8.09876 8.32905 9.27423
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011547 B = 0.001705 C = 0.001518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2424.377771 B =16421.172373 C =18442.095452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.145 3.855
3 H 0.063 0.937
4 C -0.115 4.115
5 C -0.105 4.105
6 C -0.113 4.113
7 C 0.148 3.852
8 N -0.749 5.749
9 C -0.252 4.252
10 H 0.074 0.926
11 C -0.076 4.076
12 N -0.969 5.969
13 Si 0.976 3.024
14 H -0.279 1.279
15 H -0.294 1.294
16 H -0.276 1.276
17 N -0.707 5.707
18 C 0.509 3.491
19 O -0.579 6.579
20 C 0.044 3.956
21 O -0.394 6.394
22 C 0.149 3.851
23 C 0.177 3.823
24 N -0.518 5.518
25 C -0.061 4.061
26 C -0.041 4.041
27 N -0.451 5.451
28 C 0.061 3.939
29 H 0.038 0.962
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.088 0.912
33 H 0.084 0.916
34 H 0.052 0.948
35 H 0.071 0.929
36 H 0.054 0.946
37 H 0.065 0.935
38 H 0.021 0.979
39 H 0.011 0.989
40 H 0.374 0.626
41 H 0.252 0.748
42 H 0.418 0.582
43 H 0.117 0.883
44 H 0.114 0.886
45 H 0.100 0.900
46 H 0.094 0.906
47 H 0.186 0.814
48 H 0.212 0.788
49 H 0.101 0.899
50 H 0.104 0.896
51 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.262 5.157 -28.417 30.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.041 3.959
3 H 0.082 0.918
4 C -0.153 4.153
5 C -0.143 4.143
6 C -0.151 4.151
7 C 0.021 3.979
8 N -0.392 5.392
9 C -0.384 4.384
10 H 0.092 0.908
11 C -0.268 4.268
12 N -0.619 5.619
13 Si 0.804 3.196
14 H -0.205 1.205
15 H -0.220 1.220
16 H -0.202 1.202
17 N -0.362 5.362
18 C 0.296 3.704
19 O -0.458 6.458
20 C -0.035 4.035
21 O -0.312 6.312
22 C 0.072 3.928
23 C -0.085 4.085
24 N -0.239 5.239
25 C -0.209 4.209
26 C -0.176 4.176
27 N -0.134 5.134
28 C -0.080 4.080
29 H 0.057 0.943
30 H 0.092 0.908
31 H 0.093 0.907
32 H 0.106 0.894
33 H 0.102 0.898
34 H 0.071 0.929
35 H 0.089 0.911
36 H 0.073 0.927
37 H 0.083 0.917
38 H 0.039 0.961
39 H 0.029 0.971
40 H 0.206 0.794
41 H 0.061 0.939
42 H 0.255 0.745
43 H 0.135 0.865
44 H 0.131 0.869
45 H 0.118 0.882
46 H 0.112 0.888
47 H 0.203 0.797
48 H 0.229 0.771
49 H 0.119 0.881
50 H 0.123 0.877
51 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -9.935 5.822 -28.368 30.616
hybrid contribution 1.520 -0.136 0.636 1.654
sum -8.415 5.686 -27.732 29.533
Atomic orbital electron populations
1.22125 0.94587 1.02970 1.01972 1.20931 0.94294 0.96646 0.84030
0.91830 1.21834 0.94806 1.02098 0.96582 1.21425 0.95700 1.00054
0.97088 1.21602 0.93728 1.01023 0.98704 1.20867 0.94260 0.94191
0.88537 1.42626 1.04486 1.65382 1.26687 1.19635 0.85391 1.27860
1.05518 0.90814 1.25603 1.02225 1.01182 0.97779 1.69812 1.34755
1.41820 1.15540 0.85185 0.79848 0.77603 0.76965 1.20508 1.21959
1.20177 1.45894 1.66832 1.14827 1.08609 1.20819 0.77262 0.86947
0.85397 1.90728 1.51159 1.18349 1.85530 1.22430 1.04465 0.92140
0.84491 1.88037 1.87824 1.37107 1.18261 1.20701 1.01727 0.90686
0.79733 1.23066 0.85197 0.99421 1.00836 1.70136 1.28366 1.17301
1.08069 1.22782 0.95971 0.98836 1.03284 1.23365 0.98453 1.00920
0.94847 1.45570 1.14111 1.27039 1.26662 1.22401 0.80596 1.06196
0.98786 0.94303 0.90776 0.90672 0.89386 0.89774 0.92893 0.91071
0.92681 0.91661 0.96138 0.97098 0.79442 0.93930 0.74494 0.86517
0.86856 0.88218 0.88841 0.79686 0.77124 0.88059 0.87720 0.89253
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16
2 C 0.15 2.58 2.57 44.99 0.12 2.70 16
3 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16
4 C -0.12 -1.87 4.75 30.59 0.15 -1.72 16
5 C -0.10 -2.24 5.10 30.59 0.16 -2.08 16
6 C -0.11 -3.29 5.33 30.59 0.16 -3.13 16
7 C 0.15 5.82 6.26 86.38 0.54 6.36 16
8 N -0.75 -38.48 5.60 -343.45 -1.92 -40.40 16
9 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16
10 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16
11 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16
12 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16
13 Si 0.98 45.85 29.55 68.60 2.03 47.87 16
14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16
17 N -0.71 -10.68 4.53 -442.55 -2.00 -12.69 16
18 C 0.51 10.56 7.87 87.66 0.69 11.25 16
19 O -0.58 -18.76 16.16 15.97 0.26 -18.50 16
20 C 0.04 0.57 6.42 71.23 0.46 1.03 16
21 O -0.39 -8.19 9.86 -129.95 -1.28 -9.47 16
22 C 0.15 2.20 6.03 71.24 0.43 2.63 16
23 C 0.18 3.67 7.53 138.13 1.04 4.71 16
24 N -0.52 -13.16 11.25 -188.13 -2.12 -15.28 16
25 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16
26 C -0.04 -0.61 11.58 83.08 0.96 0.36 16
27 N -0.45 -7.07 3.15 -537.59 -1.69 -8.76 16
28 C 0.06 0.45 10.79 127.77 1.38 1.83 16
29 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16
30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16
32 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16
33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
35 H 0.07 1.37 7.75 -2.39 -0.02 1.36 16
36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
40 H 0.37 20.24 7.67 -92.71 -0.71 19.53 16
41 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16
42 H 0.42 3.55 8.60 -92.71 -0.80 2.75 16
43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16
45 H 0.10 0.74 7.70 -2.39 -0.02 0.72 16
46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
47 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16
48 H 0.21 1.30 8.06 -2.91 -0.02 1.27 16
49 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16
50 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16
51 H 0.09 0.71 7.66 -2.39 -0.02 0.69 16
Total: -1.00 -87.29 426.91 2.01 -85.27
By element:
Atomic # 1 Polarization: 26.99 SS G_CDS: -0.59 Total: 26.40 kcal
Atomic # 6 Polarization: -4.57 SS G_CDS: 9.06 Total: 4.49 kcal
Atomic # 7 Polarization: -128.60 SS G_CDS: -7.46 Total: -136.06 kcal
Atomic # 8 Polarization: -26.95 SS G_CDS: -1.02 Total: -27.98 kcal
Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -87.29 2.01 -85.27 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171437251.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.924 kcal
(2) G-P(sol) polarization free energy of solvation -87.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds