Wall clock time and date at job start Tue Mar 31 2020 22:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00083 * 2 1 4 4 C 1.50702 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.98338 * 269.95759 * 4 3 2 6 6 N 1.39942 * 108.89188 * 180.02562 * 5 4 3 7 7 C 1.46501 * 125.75019 * 180.02562 * 6 5 4 8 8 C 1.34256 * 108.49002 * 359.74690 * 6 5 4 9 9 C 1.38037 * 107.42054 * 0.40068 * 8 6 5 10 10 C 1.47430 * 126.41638 * 179.87253 * 9 8 6 11 11 O 1.21603 * 120.00081 * 179.68409 * 10 9 8 12 12 N 1.34777 * 119.99963 * 359.68488 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27989 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 C 1.53003 * 109.47411 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47411 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99721 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00287 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00196 * 180.02562 * 21 20 19 24 24 N 1.31613 * 120.00304 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99742 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47202 * 89.99972 * 25 23 21 27 27 H 1.48504 * 109.47219 * 210.00496 * 25 23 21 28 28 H 1.48504 * 109.46963 * 330.00338 * 25 23 21 29 29 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47039 * 299.99768 * 1 2 3 31 31 H 1.09004 * 109.47145 * 60.00398 * 1 2 3 32 32 H 1.09002 * 109.47191 * 59.99584 * 3 2 1 33 33 H 1.09002 * 109.46828 * 299.99910 * 3 2 1 34 34 H 1.09000 * 109.47218 * 89.97266 * 7 6 5 35 35 H 1.08996 * 109.46584 * 209.97088 * 7 6 5 36 36 H 1.08999 * 109.47338 * 329.96994 * 7 6 5 37 37 H 1.08009 * 126.28934 * 180.24061 * 8 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 40 40 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 41 41 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 42 42 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 43 43 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 44 44 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 45 45 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 46 46 H 1.09002 * 109.46933 * 300.00830 * 18 17 16 47 47 H 1.09007 * 109.47158 * 60.00052 * 18 17 16 48 48 H 1.08997 * 109.47193 * 299.99893 * 19 18 17 49 49 H 1.08998 * 109.46968 * 60.00156 * 19 18 17 50 50 H 0.96995 * 119.99983 * 0.02562 * 20 19 18 51 51 H 0.97003 * 119.99861 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2771 1.1266 1.0546 6 7 5.6104 1.0213 0.6428 7 6 6.7747 0.9293 1.5272 8 6 5.6420 1.0127 -0.6994 9 6 4.3398 1.1209 -1.1442 10 6 3.8948 1.1550 -2.5493 11 8 2.7107 1.2479 -2.8100 12 7 4.8004 1.0832 -3.5449 13 6 4.3587 1.1233 -4.9411 14 1 3.4946 1.7819 -5.0302 15 6 3.9744 -0.2863 -5.3951 16 6 5.4945 1.6503 -5.8204 17 6 5.7945 3.1039 -5.4490 18 6 6.9298 3.6312 -6.3287 19 6 7.2294 5.0850 -5.9577 20 7 8.3170 5.5896 -6.7996 21 6 8.7606 6.8761 -6.6468 22 1 8.3085 7.5189 -5.9059 23 6 9.7907 7.3545 -7.4449 24 7 10.2175 8.5908 -7.2976 25 14 10.5723 6.2430 -8.7269 26 1 9.8440 6.3830 -10.0134 27 1 11.9932 6.6302 -8.9176 28 1 10.5008 4.8323 -8.2686 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.9823 -0.1180 1.7468 35 1 7.6396 1.3760 1.0368 36 1 6.5686 1.4614 2.4558 37 1 6.5246 0.9378 -1.3176 38 1 5.7450 1.0095 -3.3369 39 1 3.1653 -0.6618 -4.7687 40 1 3.6462 -0.2566 -6.4341 41 1 4.8384 -0.9450 -5.3060 42 1 6.3865 1.0438 -5.6640 43 1 5.1978 1.5968 -6.8679 44 1 4.9025 3.7105 -5.6055 45 1 6.0911 3.1575 -4.4015 46 1 7.8220 3.0247 -6.1727 47 1 6.6328 3.5778 -7.3761 48 1 6.3371 5.6912 -6.1141 49 1 7.5263 5.1389 -4.9103 50 1 8.7228 5.0125 -7.4653 51 1 10.9376 8.9249 -7.8551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171586961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:45 Heat of formation + Delta-G solvation = -6.014392 kcal Electronic energy + Delta-G solvation = -28974.461254 eV Core-core repulsion = 24910.842421 eV Total energy + Delta-G solvation = -4063.618833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80728 -39.57032 -37.96533 -36.92605 -35.39663 -33.97957 -33.32702 -32.00004 -30.91403 -29.98405 -29.24034 -27.74757 -26.85231 -25.46161 -24.26489 -23.09701 -21.88969 -21.16848 -20.89242 -20.46468 -20.09091 -18.05633 -17.48238 -16.77818 -16.62386 -16.11960 -15.91474 -15.84318 -15.42652 -15.13330 -14.89355 -14.58522 -14.36666 -14.16392 -13.79254 -13.52107 -13.36196 -13.28123 -13.03401 -12.98153 -12.69362 -12.59377 -12.41552 -12.33564 -11.89849 -11.65580 -11.63015 -11.45484 -11.24691 -11.13501 -10.88903 -10.82596 -10.40864 -10.32808 -10.13819 -10.09629 -9.88453 -9.70632 -9.58619 -9.25402 -8.95239 -8.88665 -7.21917 -5.76383 -3.11544 1.15470 1.68448 1.92254 3.07375 3.23493 3.36609 3.39568 3.44447 3.70895 4.03388 4.22305 4.50490 4.54883 4.59202 4.65907 4.78354 4.86101 4.93250 4.94760 4.95476 5.06440 5.12654 5.17494 5.23231 5.27256 5.35158 5.39412 5.45322 5.49902 5.53278 5.58667 5.61630 5.68182 5.87840 5.90231 6.01810 6.07921 6.08817 6.17511 6.19167 6.35111 6.37496 6.44450 6.78131 6.82001 6.89264 7.15678 7.42802 8.00763 8.17717 8.42963 9.22542 9.95013 10.15389 11.42172 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.002077 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.267613 B =13476.073654 C =14530.290179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.141 3.859 4 C 0.130 3.870 5 N -0.281 5.281 6 N -0.356 5.356 7 C 0.095 3.905 8 C 0.100 3.900 9 C -0.274 4.274 10 C 0.597 3.403 11 O -0.539 6.539 12 N -0.722 5.722 13 C 0.144 3.856 14 H 0.090 0.910 15 C -0.163 4.163 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.129 4.129 19 C 0.156 3.844 20 N -0.758 5.758 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.001 3.999 24 N -0.935 5.935 25 Si 0.886 3.114 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.186 0.814 38 H 0.396 0.604 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.024 0.976 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 -22.950 15.912 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.063 3.937 4 C -0.038 4.038 5 N -0.104 5.104 6 N -0.135 5.135 7 C -0.046 4.046 8 C -0.052 4.052 9 C -0.289 4.289 10 C 0.384 3.616 11 O -0.417 6.417 12 N -0.373 5.373 13 C 0.039 3.961 14 H 0.108 0.892 15 C -0.221 4.221 16 C -0.165 4.165 17 C -0.152 4.152 18 C -0.167 4.167 19 C 0.029 3.971 20 N -0.404 5.404 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.583 5.583 25 Si 0.717 3.283 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.203 0.797 38 H 0.230 0.770 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.193 0.807 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.040 -22.824 17.185 31.833 hybrid contribution 1.250 -0.493 -1.660 2.135 sum -12.790 -23.316 15.525 30.794 Atomic orbital electron populations 1.22730 0.80452 1.02777 1.00199 1.87886 1.19949 1.26670 1.95510 1.20695 0.84814 0.85878 1.02312 1.21930 0.95656 0.97087 0.89128 1.77193 0.86379 1.24255 1.22557 1.48336 1.06394 1.53831 1.04916 1.22067 0.83692 1.03985 0.94862 1.23118 0.98941 0.97807 0.85294 1.20241 0.92142 1.21926 0.94584 1.17165 0.85583 0.75463 0.83365 1.90736 1.16456 1.50316 1.84161 1.45918 1.09746 1.75682 1.05993 1.21006 0.98152 0.97181 0.79713 0.89187 1.22177 1.01778 0.96587 1.01577 1.21941 0.97739 0.96928 0.99887 1.21511 0.99035 0.94752 0.99927 1.21782 0.97830 0.97473 0.99653 1.20630 0.91049 0.91280 0.94129 1.42742 1.41277 1.12887 1.43471 1.19088 1.13917 0.87461 1.16882 0.89291 1.24696 0.98952 0.96175 0.99599 1.69706 1.31058 1.14896 1.42682 0.86512 0.78939 0.80382 0.82478 1.21065 1.21742 1.20393 0.89621 0.94115 0.93503 0.92030 0.89159 0.90025 0.88652 0.88643 0.79733 0.77038 0.92086 0.91644 0.92643 0.91475 0.90250 0.91729 0.91972 0.92245 0.92098 0.95668 0.95855 0.80747 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.67 10.69 -35.23 -0.38 -5.04 16 3 C 0.14 1.61 5.97 36.01 0.21 1.83 16 4 C 0.13 1.59 6.89 -82.02 -0.57 1.02 16 5 N -0.28 -3.30 12.50 33.90 0.42 -2.88 16 6 N -0.36 -3.03 3.98 -67.60 -0.27 -3.30 16 7 C 0.09 0.37 11.44 59.85 0.68 1.06 16 8 C 0.10 0.78 10.99 -16.57 -0.18 0.60 16 9 C -0.27 -3.02 6.13 -105.07 -0.64 -3.67 16 10 C 0.60 7.06 7.78 -12.52 -0.10 6.96 16 11 O -0.54 -8.00 14.58 5.27 0.08 -7.92 16 12 N -0.72 -6.54 4.52 -54.88 -0.25 -6.79 16 13 C 0.14 1.34 2.58 -67.93 -0.17 1.16 16 14 H 0.09 1.01 7.57 -51.93 -0.39 0.61 16 15 C -0.16 -1.40 9.49 37.16 0.35 -1.05 16 16 C -0.13 -1.12 4.75 -26.73 -0.13 -1.24 16 17 C -0.11 -1.28 5.10 -26.73 -0.14 -1.42 16 18 C -0.13 -1.85 5.33 -26.73 -0.14 -2.00 16 19 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 20 N -0.76 -18.35 5.41 -59.91 -0.32 -18.68 16 21 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 22 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 23 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 24 N -0.94 -29.67 13.97 55.49 0.78 -28.90 16 25 Si 0.89 22.21 27.74 -169.99 -4.71 17.49 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.08 6.55 -51.93 -0.34 0.74 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.19 0.67 7.46 -52.48 -0.39 0.28 16 38 H 0.40 2.60 7.52 -40.82 -0.31 2.30 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.68 7.75 -51.93 -0.40 0.27 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.36 8.42 5.53 -40.82 -0.23 8.20 16 51 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 420.97 15.07 6.34 6.34 Total: -1.00 -38.11 420.97 -7.13 -45.24 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.84 Total: 4.01 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 0.02 Total: 0.41 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.36 Total: -60.54 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.30 Total: -12.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -38.11 -7.13 -45.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171586961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.228 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds