Wall clock time and date at job start Tue Mar 31 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00083 * 2 1 4 4 C 1.50702 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.98338 * 269.95759 * 4 3 2 6 6 N 1.39942 * 108.89188 * 180.02562 * 5 4 3 7 7 C 1.46501 * 125.75019 * 180.02562 * 6 5 4 8 8 C 1.34256 * 108.49002 * 359.74690 * 6 5 4 9 9 C 1.38037 * 107.42054 * 0.40068 * 8 6 5 10 10 C 1.47430 * 126.41638 * 179.87253 * 9 8 6 11 11 O 1.21603 * 120.00081 * 179.68409 * 10 9 8 12 12 N 1.34777 * 119.99963 * 359.68488 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27989 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 C 1.53003 * 109.47411 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47411 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99721 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00287 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00196 * 180.02562 * 21 20 19 24 24 N 1.31613 * 120.00304 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99742 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47202 * 89.99972 * 25 23 21 27 27 H 1.48504 * 109.47219 * 210.00496 * 25 23 21 28 28 H 1.48504 * 109.46963 * 330.00338 * 25 23 21 29 29 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47039 * 299.99768 * 1 2 3 31 31 H 1.09004 * 109.47145 * 60.00398 * 1 2 3 32 32 H 1.09002 * 109.47191 * 59.99584 * 3 2 1 33 33 H 1.09002 * 109.46828 * 299.99910 * 3 2 1 34 34 H 1.09000 * 109.47218 * 89.97266 * 7 6 5 35 35 H 1.08996 * 109.46584 * 209.97088 * 7 6 5 36 36 H 1.08999 * 109.47338 * 329.96994 * 7 6 5 37 37 H 1.08009 * 126.28934 * 180.24061 * 8 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 40 40 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 41 41 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 42 42 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 43 43 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 44 44 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 45 45 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 46 46 H 1.09002 * 109.46933 * 300.00830 * 18 17 16 47 47 H 1.09007 * 109.47158 * 60.00052 * 18 17 16 48 48 H 1.08997 * 109.47193 * 299.99893 * 19 18 17 49 49 H 1.08998 * 109.46968 * 60.00156 * 19 18 17 50 50 H 0.96995 * 119.99983 * 0.02562 * 20 19 18 51 51 H 0.97003 * 119.99861 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2771 1.1266 1.0546 6 7 5.6104 1.0213 0.6428 7 6 6.7747 0.9293 1.5272 8 6 5.6420 1.0127 -0.6994 9 6 4.3398 1.1209 -1.1442 10 6 3.8948 1.1550 -2.5493 11 8 2.7107 1.2479 -2.8100 12 7 4.8004 1.0832 -3.5449 13 6 4.3587 1.1233 -4.9411 14 1 3.4946 1.7819 -5.0302 15 6 3.9744 -0.2863 -5.3951 16 6 5.4945 1.6503 -5.8204 17 6 5.7945 3.1039 -5.4490 18 6 6.9298 3.6312 -6.3287 19 6 7.2294 5.0850 -5.9577 20 7 8.3170 5.5896 -6.7996 21 6 8.7606 6.8761 -6.6468 22 1 8.3085 7.5189 -5.9059 23 6 9.7907 7.3545 -7.4449 24 7 10.2175 8.5908 -7.2976 25 14 10.5723 6.2430 -8.7269 26 1 9.8440 6.3830 -10.0134 27 1 11.9932 6.6302 -8.9176 28 1 10.5008 4.8323 -8.2686 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 6.9823 -0.1180 1.7468 35 1 7.6396 1.3760 1.0368 36 1 6.5686 1.4614 2.4558 37 1 6.5246 0.9378 -1.3176 38 1 5.7450 1.0095 -3.3369 39 1 3.1653 -0.6618 -4.7687 40 1 3.6462 -0.2566 -6.4341 41 1 4.8384 -0.9450 -5.3060 42 1 6.3865 1.0438 -5.6640 43 1 5.1978 1.5968 -6.8679 44 1 4.9025 3.7105 -5.6055 45 1 6.0911 3.1575 -4.4015 46 1 7.8220 3.0247 -6.1727 47 1 6.6328 3.5778 -7.3761 48 1 6.3371 5.6912 -6.1141 49 1 7.5263 5.1389 -4.9103 50 1 8.7228 5.0125 -7.4653 51 1 10.9376 8.9249 -7.8551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171586961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:44 Heat of formation + Delta-G solvation = -34.341280 kcal Electronic energy + Delta-G solvation = -28975.689600 eV Core-core repulsion = 24910.842421 eV Total energy + Delta-G solvation = -4064.847179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.51334 -40.39652 -38.78330 -37.97608 -36.86508 -34.76583 -34.59536 -33.34477 -32.34632 -30.77198 -29.91664 -29.00861 -27.46509 -26.22282 -25.71774 -24.00292 -23.26573 -22.20527 -21.96106 -21.26097 -20.85598 -19.60945 -18.72194 -17.57445 -17.40623 -16.84669 -16.69509 -16.62177 -16.48175 -16.22591 -16.11569 -15.81693 -15.59748 -15.14284 -14.87500 -14.64316 -14.44577 -14.24698 -14.09723 -13.70279 -13.61462 -13.40345 -13.26537 -13.10323 -13.01174 -12.93948 -12.89298 -12.44112 -12.37293 -12.22123 -12.05051 -11.98707 -11.86706 -11.72412 -11.46744 -11.38515 -10.98715 -10.96368 -10.58282 -10.55576 -10.07799 -9.65373 -9.30109 -8.03271 -5.37442 0.51293 0.86054 1.38026 1.38301 1.43405 1.50868 2.32633 2.41517 2.49118 2.98811 3.27761 3.38388 3.52735 3.68775 3.92481 3.98660 4.08023 4.12864 4.15767 4.25856 4.38113 4.38474 4.40231 4.43622 4.45740 4.51475 4.56414 4.62690 4.68946 4.71335 4.78589 4.81873 4.85140 4.92170 4.97211 5.02763 5.07487 5.17802 5.24990 5.30232 5.38498 5.48192 5.55298 5.68073 5.74720 5.85175 6.11949 6.21031 6.42299 6.71430 7.07936 7.38667 7.84277 8.04801 9.18340 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.002077 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.267613 B =13476.073654 C =14530.290179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.143 3.857 4 C 0.106 3.894 5 N -0.311 5.311 6 N -0.354 5.354 7 C 0.084 3.916 8 C 0.122 3.878 9 C -0.306 4.306 10 C 0.594 3.406 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.146 3.854 14 H 0.066 0.934 15 C -0.157 4.157 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.115 4.115 19 C 0.149 3.851 20 N -0.760 5.760 21 C -0.241 4.241 22 H 0.051 0.949 23 C -0.069 4.069 24 N -0.985 5.985 25 Si 0.963 3.037 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.246 1.246 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.232 0.768 38 H 0.411 0.589 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.014 0.986 49 H 0.021 0.979 50 H 0.368 0.632 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -25.824 15.167 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C 0.065 3.935 4 C -0.061 4.061 5 N -0.135 5.135 6 N -0.132 5.132 7 C -0.055 4.055 8 C -0.031 4.031 9 C -0.321 4.321 10 C 0.382 3.618 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.215 4.215 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.406 5.406 21 C -0.372 4.372 22 H 0.069 0.931 23 C -0.260 4.260 24 N -0.636 5.636 25 Si 0.789 3.211 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.170 1.170 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.248 0.752 38 H 0.247 0.753 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.032 0.968 49 H 0.039 0.961 50 H 0.201 0.799 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.199 -25.745 16.474 32.909 hybrid contribution 0.654 0.468 -1.304 1.532 sum -11.545 -25.277 15.170 31.660 Atomic orbital electron populations 1.22919 0.78850 1.03967 1.00905 1.87839 1.21874 1.27240 1.95628 1.20641 0.85207 0.85642 1.01987 1.22131 0.96068 0.97862 0.90026 1.77103 0.88104 1.25334 1.22991 1.48739 1.06197 1.52360 1.05857 1.22481 0.82899 1.05409 0.94690 1.23734 0.99103 0.94885 0.85329 1.20321 0.93541 1.24352 0.93907 1.17370 0.85325 0.74938 0.84163 1.90709 1.18244 1.52398 1.84782 1.45789 1.10182 1.74626 1.05450 1.20948 0.97724 0.97280 0.79899 0.91616 1.22112 1.01617 0.96071 1.01687 1.21839 0.98196 0.95148 1.00042 1.21438 0.97341 0.96187 0.99637 1.21664 0.99439 0.93831 1.00389 1.20857 0.89020 0.94477 0.93316 1.42751 1.42282 1.11252 1.44336 1.19062 1.13462 0.89093 1.15566 0.93117 1.25636 0.99937 0.97947 1.02526 1.69905 1.32006 1.17373 1.44294 0.85300 0.77176 0.79603 0.79039 1.20401 1.22118 1.17010 0.88215 0.92498 0.93679 0.91122 0.90543 0.88465 0.85602 0.88712 0.75162 0.75264 0.94363 0.90555 0.91056 0.89245 0.89386 0.92967 0.91487 0.90830 0.91688 0.96834 0.96082 0.79899 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.45 10.69 -148.98 -1.59 -12.04 16 3 C 0.14 3.51 5.97 71.24 0.43 3.93 16 4 C 0.11 2.67 6.89 43.52 0.30 2.97 16 5 N -0.31 -7.29 12.50 -46.68 -0.58 -7.88 16 6 N -0.35 -5.34 3.98 -367.78 -1.46 -6.80 16 7 C 0.08 0.43 11.44 127.77 1.46 1.89 16 8 C 0.12 1.61 10.99 84.27 0.93 2.54 16 9 C -0.31 -6.61 6.13 -20.15 -0.12 -6.74 16 10 C 0.59 13.98 7.78 86.66 0.67 14.65 16 11 O -0.58 -18.07 14.58 -4.04 -0.06 -18.13 16 12 N -0.71 -11.52 4.52 -445.80 -2.01 -13.53 16 13 C 0.15 2.45 2.58 44.99 0.12 2.57 16 14 H 0.07 1.46 7.57 -2.39 -0.02 1.44 16 15 C -0.16 -2.40 9.49 71.98 0.68 -1.72 16 16 C -0.11 -1.60 4.75 30.59 0.15 -1.46 16 17 C -0.11 -2.13 5.10 30.59 0.16 -1.97 16 18 C -0.12 -2.93 5.33 30.59 0.16 -2.77 16 19 C 0.15 5.57 6.26 86.38 0.54 6.11 16 20 N -0.76 -35.62 5.41 -343.45 -1.86 -37.48 16 21 C -0.24 -14.02 10.47 84.03 0.88 -13.14 16 22 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 24 N -0.99 -63.69 13.97 21.65 0.30 -63.39 16 25 Si 0.96 44.93 27.74 68.60 1.90 46.84 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 2.02 6.55 -2.39 -0.02 2.00 16 34 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.23 0.58 7.46 -2.91 -0.02 0.56 16 38 H 0.41 3.97 7.52 -92.71 -0.70 3.27 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.26 7.75 -2.39 -0.02 1.25 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.37 16.01 5.53 -92.71 -0.51 15.50 16 51 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -86.73 420.97 2.35 -84.38 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.35 Total: 23.06 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 8.06 Total: 4.98 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -5.62 Total: -129.08 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.65 Total: -30.17 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.84 kcal Total: -86.73 2.35 -84.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171586961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.034 kcal (2) G-P(sol) polarization free energy of solvation -86.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds