Wall clock time and date at job start Tue Mar 31 2020 22:25:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42896 * 114.00192 * 2 1
4 4 C 1.52996 * 109.47344 * 179.97438 * 3 2 1
5 5 N 1.46504 * 109.47059 * 180.02562 * 4 3 2
6 6 C 1.35032 * 124.87938 * 124.97989 * 5 4 3
7 7 C 1.35376 * 107.22582 * 179.76209 * 6 5 4
8 8 C 1.41500 * 105.50122 * 0.35497 * 7 6 5
9 9 C 1.47712 * 126.51820 * 179.90276 * 8 7 6
10 10 O 1.21563 * 119.99789 * 359.71231 * 9 8 7
11 11 N 1.34769 * 119.99779 * 179.71298 * 9 8 7
12 12 C 1.46505 * 119.99686 * 180.02562 * 11 9 8
13 13 H 1.09002 * 109.47068 * 324.99893 * 12 11 9
14 14 C 1.53002 * 109.47411 * 84.99974 * 12 11 9
15 15 C 1.52997 * 109.47212 * 204.99833 * 12 11 9
16 16 C 1.53004 * 109.47236 * 64.99775 * 15 12 11
17 17 C 1.52997 * 109.47236 * 180.02562 * 16 15 12
18 18 C 1.53003 * 109.46915 * 179.97438 * 17 16 15
19 19 N 1.46507 * 109.46780 * 180.02562 * 18 17 16
20 20 C 1.36941 * 119.99738 * 180.02562 * 19 18 17
21 21 H 1.08004 * 119.99895 * 359.97438 * 20 19 18
22 22 C 1.38806 * 119.99837 * 180.02562 * 20 19 18
23 23 N 1.31621 * 120.00099 * 180.02562 * 22 20 19
24 24 Si 1.86800 * 120.00342 * 359.97438 * 22 20 19
25 25 H 1.48500 * 109.47050 * 90.00135 * 24 22 20
26 26 H 1.48493 * 109.47342 * 210.00404 * 24 22 20
27 27 H 1.48506 * 109.47184 * 330.00666 * 24 22 20
28 28 N 1.28466 * 124.88544 * 304.97209 * 5 4 3
29 29 H 1.08999 * 109.47245 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47023 * 300.00007 * 1 2 3
31 31 H 1.09008 * 109.46799 * 59.99899 * 1 2 3
32 32 H 1.09003 * 109.46911 * 59.99632 * 3 2 1
33 33 H 1.09001 * 109.47524 * 300.00304 * 3 2 1
34 34 H 1.08999 * 109.46642 * 60.00110 * 4 3 2
35 35 H 1.09002 * 109.47119 * 300.00086 * 4 3 2
36 36 H 1.07997 * 126.39110 * 0.02562 * 6 5 4
37 37 H 1.08001 * 127.24551 * 180.24244 * 7 6 5
38 38 H 0.97000 * 120.00680 * 359.97438 * 11 9 8
39 39 H 1.08996 * 109.47407 * 180.02562 * 14 12 11
40 40 H 1.09000 * 109.46986 * 300.00092 * 14 12 11
41 41 H 1.09002 * 109.47075 * 59.99363 * 14 12 11
42 42 H 1.09001 * 109.47630 * 184.99905 * 15 12 11
43 43 H 1.09004 * 109.47346 * 305.00035 * 15 12 11
44 44 H 1.09001 * 109.46917 * 300.00567 * 16 15 12
45 45 H 1.09004 * 109.46741 * 59.99889 * 16 15 12
46 46 H 1.08993 * 109.47322 * 300.00158 * 17 16 15
47 47 H 1.09004 * 109.46881 * 60.00519 * 17 16 15
48 48 H 1.08993 * 109.47422 * 300.00302 * 18 17 16
49 49 H 1.09004 * 109.46754 * 60.00646 * 18 17 16
50 50 H 0.96997 * 120.00419 * 0.02562 * 19 18 17
51 51 H 0.96993 * 120.00263 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 7 4.1314 2.5230 0.0013
6 6 5.0252 2.9699 0.9094
7 6 5.3390 4.2424 0.5704
8 6 4.5734 4.5256 -0.5854
9 6 4.5601 5.7943 -1.3417
10 8 5.2523 6.7255 -0.9791
11 7 3.7804 5.9195 -2.4338
12 6 3.7676 7.1777 -3.1843
13 1 3.8812 8.0136 -2.4941
14 6 4.9222 7.1846 -4.1882
15 6 2.4401 7.3114 -3.9331
16 6 1.2954 7.4298 -2.9248
17 6 -0.0321 7.5629 -3.6736
18 6 -1.1768 7.6807 -2.6652
19 7 -2.4481 7.8075 -3.3823
20 6 -3.6194 7.9278 -2.6832
21 1 -3.6061 7.9289 -1.6032
22 6 -4.8240 8.0474 -3.3625
23 7 -5.9498 8.1636 -2.6906
24 14 -4.8472 8.0450 -5.2304
25 1 -4.9937 6.6513 -5.7217
26 1 -5.9893 8.8624 -5.7124
27 1 -3.5767 8.6191 -5.7420
28 7 3.8788 3.4401 -0.8621
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8901
32 1 1.6886 1.8463 0.8900
33 1 1.6887 1.8464 -0.8899
34 1 3.8574 0.6435 -0.8891
35 1 3.8568 0.6438 0.8909
36 1 5.4197 2.4143 1.7472
37 1 6.0273 4.9029 1.0768
38 1 3.2283 5.1764 -2.7235
39 1 4.9130 8.1208 -4.7462
40 1 5.8680 7.0893 -3.6547
41 1 4.8087 6.3486 -4.8783
42 1 2.4650 8.2022 -4.5608
43 1 2.2847 6.4314 -4.5574
44 1 1.2705 6.5390 -2.2972
45 1 1.4508 8.3098 -2.3006
46 1 -0.0075 8.4534 -4.3015
47 1 -0.1872 6.6826 -4.2975
48 1 -1.2013 6.7899 -2.0377
49 1 -1.0220 8.5608 -2.0411
50 1 -2.4602 7.8062 -4.3522
51 1 -6.7915 8.2476 -3.1653
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001171751554.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:25:12
Heat of formation + Delta-G solvation = -4.646919 kcal
Electronic energy + Delta-G solvation = -28746.746881 eV
Core-core repulsion = 24683.187346 eV
Total energy + Delta-G solvation = -4063.559535 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-43.02454 -39.76577 -38.44689 -36.98109 -35.39461 -34.39961 -33.27316 -31.78621
-31.01393 -30.56969 -29.67440 -27.73405 -26.83878 -24.97991 -24.11631 -22.85885
-21.83960 -21.68074 -20.89137 -20.75446 -20.21731 -18.28749 -17.49514 -17.33484
-16.81989 -16.50334 -16.40886 -15.96109 -15.32642 -15.10140 -14.79403 -14.54668
-14.45103 -14.20141 -14.00293 -13.75473 -13.58005 -13.36201 -13.25638 -12.98934
-12.70812 -12.51548 -12.36110 -12.15676 -11.88383 -11.82155 -11.62884 -11.43415
-11.23951 -11.12753 -10.86142 -10.81039 -10.38653 -10.32358 -10.23707 -10.22073
-10.07988 -9.64307 -9.57281 -9.44116 -9.16432 -8.87134 -7.20255 -5.75178
-3.10182 1.27772 1.79113 1.87916 2.98956 3.24394 3.32119 3.38193
3.41129 3.45752 3.94688 4.29666 4.35808 4.43502 4.53511 4.60668
4.61597 4.82998 4.90663 4.92576 4.97577 5.00066 5.09493 5.18202
5.24247 5.31204 5.32025 5.35801 5.40021 5.44632 5.51809 5.59878
5.62290 5.70448 5.86646 5.91520 6.04465 6.08528 6.10781 6.19724
6.22117 6.32082 6.39856 6.41711 6.53231 6.80874 6.84693 7.28163
7.59444 8.02139 8.07159 8.44334 9.23968 9.96514 10.17091 11.43517
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.007557 B = 0.002594 C = 0.002047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3704.423197 B =10792.176361 C =13675.549477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.391 6.391
3 C 0.048 3.952
4 C 0.125 3.875
5 N -0.281 5.281
6 C -0.015 4.015
7 C -0.178 4.178
8 C -0.014 4.014
9 C 0.606 3.394
10 O -0.534 6.534
11 N -0.709 5.709
12 C 0.140 3.860
13 H 0.091 0.909
14 C -0.163 4.163
15 C -0.127 4.127
16 C -0.115 4.115
17 C -0.129 4.129
18 C 0.156 3.844
19 N -0.758 5.758
20 C -0.243 4.243
21 H 0.089 0.911
22 C 0.002 3.998
23 N -0.936 5.936
24 Si 0.886 3.114
25 H -0.284 1.284
26 H -0.291 1.291
27 H -0.277 1.277
28 N -0.260 5.260
29 H 0.091 0.909
30 H 0.046 0.954
31 H 0.049 0.951
32 H 0.059 0.941
33 H 0.071 0.929
34 H 0.103 0.897
35 H 0.113 0.887
36 H 0.184 0.816
37 H 0.164 0.836
38 H 0.406 0.594
39 H 0.067 0.933
40 H 0.059 0.941
41 H 0.056 0.944
42 H 0.080 0.920
43 H 0.068 0.932
44 H 0.062 0.938
45 H 0.064 0.936
46 H 0.060 0.940
47 H 0.059 0.941
48 H 0.024 0.976
49 H 0.025 0.975
50 H 0.360 0.640
51 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.055 -15.898 4.181 30.807
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.309 6.309
3 C -0.029 4.029
4 C 0.004 3.996
5 N -0.070 5.070
6 C -0.157 4.157
7 C -0.206 4.206
8 C -0.174 4.174
9 C 0.390 3.610
10 O -0.409 6.409
11 N -0.361 5.361
12 C 0.036 3.964
13 H 0.109 0.891
14 C -0.221 4.221
15 C -0.165 4.165
16 C -0.153 4.153
17 C -0.167 4.167
18 C 0.029 3.971
19 N -0.404 5.404
20 C -0.373 4.373
21 H 0.107 0.893
22 C -0.194 4.194
23 N -0.585 5.585
24 Si 0.717 3.283
25 H -0.211 1.211
26 H -0.217 1.217
27 H -0.203 1.203
28 N -0.096 5.096
29 H 0.110 0.890
30 H 0.065 0.935
31 H 0.067 0.933
32 H 0.077 0.923
33 H 0.089 0.911
34 H 0.122 0.878
35 H 0.131 0.869
36 H 0.201 0.799
37 H 0.181 0.819
38 H 0.241 0.759
39 H 0.086 0.914
40 H 0.078 0.922
41 H 0.075 0.925
42 H 0.099 0.901
43 H 0.086 0.914
44 H 0.081 0.919
45 H 0.083 0.917
46 H 0.079 0.921
47 H 0.078 0.922
48 H 0.042 0.958
49 H 0.043 0.957
50 H 0.193 0.807
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 25.661 -15.920 3.872 30.445
hybrid contribution -0.160 0.072 -0.797 0.815
sum 25.501 -15.849 3.075 30.182
Atomic orbital electron populations
1.22833 0.79334 1.03298 1.00928 1.87749 1.21042 1.26471 1.95688
1.22643 0.91809 0.85870 1.02625 1.21712 0.93366 0.78294 1.06219
1.45324 1.31171 1.11540 1.18976 1.22910 0.97722 0.96721 0.98319
1.21801 1.04466 0.95970 0.98319 1.21994 1.01665 0.94055 0.99733
1.16861 0.79632 0.84845 0.79616 1.90791 1.42345 1.39220 1.68557
1.45959 1.45303 1.16961 1.27873 1.21085 0.95192 0.86654 0.93425
0.89088 1.22181 0.98675 1.02244 0.99046 1.21937 0.93007 1.03107
0.98411 1.21518 0.93595 1.02368 0.97828 1.21774 0.94278 1.01709
0.98942 1.20628 0.84591 0.98250 0.93590 1.42748 1.02898 1.90275
1.04459 1.19092 0.83311 1.42116 0.92765 0.89311 1.24686 0.95231
1.02107 0.97364 1.69706 0.97288 1.57228 1.34231 0.86512 0.76910
0.77672 0.87247 1.21121 1.21722 1.20311 1.73483 1.22443 0.97726
1.15900 0.89031 0.93537 0.93252 0.92321 0.91107 0.87840 0.86880
0.79899 0.81867 0.75855 0.91441 0.92153 0.92486 0.90138 0.91350
0.91916 0.91739 0.92084 0.92207 0.95825 0.95720 0.80736 0.93095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 11.01 101.05 1.11 1.33 16
2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.47 16
3 C 0.05 0.34 6.04 37.16 0.22 0.57 16
4 C 0.12 0.68 6.77 -4.04 -0.03 0.65 16
5 N -0.28 -2.22 3.41 -61.33 -0.21 -2.43 16
6 C -0.01 -0.10 11.40 -17.16 -0.20 -0.30 16
7 C -0.18 -1.68 10.81 -39.36 -0.43 -2.11 16
8 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16
9 C 0.61 7.69 7.79 -12.39 -0.10 7.59 16
10 O -0.53 -8.23 16.59 5.31 0.09 -8.15 16
11 N -0.71 -7.58 4.53 -54.79 -0.25 -7.83 16
12 C 0.14 1.43 2.57 -67.93 -0.17 1.25 16
13 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16
14 C -0.16 -1.48 9.48 37.16 0.35 -1.12 16
15 C -0.13 -1.24 4.75 -26.73 -0.13 -1.36 16
16 C -0.11 -1.41 5.10 -26.73 -0.14 -1.55 16
17 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16
18 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16
19 N -0.76 -18.74 5.41 -59.90 -0.32 -19.07 16
20 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16
21 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16
22 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16
23 N -0.94 -29.95 13.97 55.49 0.78 -29.18 16
24 Si 0.89 22.47 27.74 -169.99 -4.71 17.76 16
25 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16
26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16
27 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16
28 N -0.26 -2.69 11.36 33.42 0.38 -2.31 16
29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16
32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
33 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16
34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.11 0.33 8.04 -51.93 -0.42 -0.09 16
36 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16
37 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16
38 H 0.41 3.93 8.33 -40.82 -0.34 3.59 16
39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
44 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16
45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
50 H 0.36 8.60 5.53 -40.82 -0.23 8.38 16
51 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16
LS Contribution 424.78 15.07 6.40 6.40
Total: -1.00 -36.33 424.78 -7.71 -44.04
By element:
Atomic # 1 Polarization: 15.31 SS G_CDS: -8.98 Total: 6.34 kcal
Atomic # 6 Polarization: -1.61 SS G_CDS: -0.51 Total: -2.11 kcal
Atomic # 7 Polarization: -61.18 SS G_CDS: 0.37 Total: -60.81 kcal
Atomic # 8 Polarization: -11.32 SS G_CDS: -0.29 Total: -11.61 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal
Total LS contribution 6.40 Total: 6.40 kcal
Total: -36.33 -7.71 -44.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171751554.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.392 kcal
(2) G-P(sol) polarization free energy of solvation -36.327 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds