Wall clock time and date at job start Tue Mar 31 2020 22:25:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42896 * 114.00192 * 2 1
4 4 C 1.52996 * 109.47344 * 179.97438 * 3 2 1
5 5 N 1.46504 * 109.47059 * 180.02562 * 4 3 2
6 6 C 1.35032 * 124.87938 * 124.97989 * 5 4 3
7 7 C 1.35376 * 107.22582 * 179.76209 * 6 5 4
8 8 C 1.41500 * 105.50122 * 0.35497 * 7 6 5
9 9 C 1.47712 * 126.51820 * 179.90276 * 8 7 6
10 10 O 1.21563 * 119.99789 * 359.71231 * 9 8 7
11 11 N 1.34769 * 119.99779 * 179.71298 * 9 8 7
12 12 C 1.46505 * 119.99686 * 180.02562 * 11 9 8
13 13 H 1.09002 * 109.47068 * 324.99893 * 12 11 9
14 14 C 1.53002 * 109.47411 * 84.99974 * 12 11 9
15 15 C 1.52997 * 109.47212 * 204.99833 * 12 11 9
16 16 C 1.53004 * 109.47236 * 64.99775 * 15 12 11
17 17 C 1.52997 * 109.47236 * 180.02562 * 16 15 12
18 18 C 1.53003 * 109.46915 * 179.97438 * 17 16 15
19 19 N 1.46507 * 109.46780 * 180.02562 * 18 17 16
20 20 C 1.36941 * 119.99738 * 180.02562 * 19 18 17
21 21 H 1.08004 * 119.99895 * 359.97438 * 20 19 18
22 22 C 1.38806 * 119.99837 * 180.02562 * 20 19 18
23 23 N 1.31621 * 120.00099 * 180.02562 * 22 20 19
24 24 Si 1.86800 * 120.00342 * 359.97438 * 22 20 19
25 25 H 1.48500 * 109.47050 * 90.00135 * 24 22 20
26 26 H 1.48493 * 109.47342 * 210.00404 * 24 22 20
27 27 H 1.48506 * 109.47184 * 330.00666 * 24 22 20
28 28 N 1.28466 * 124.88544 * 304.97209 * 5 4 3
29 29 H 1.08999 * 109.47245 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47023 * 300.00007 * 1 2 3
31 31 H 1.09008 * 109.46799 * 59.99899 * 1 2 3
32 32 H 1.09003 * 109.46911 * 59.99632 * 3 2 1
33 33 H 1.09001 * 109.47524 * 300.00304 * 3 2 1
34 34 H 1.08999 * 109.46642 * 60.00110 * 4 3 2
35 35 H 1.09002 * 109.47119 * 300.00086 * 4 3 2
36 36 H 1.07997 * 126.39110 * 0.02562 * 6 5 4
37 37 H 1.08001 * 127.24551 * 180.24244 * 7 6 5
38 38 H 0.97000 * 120.00680 * 359.97438 * 11 9 8
39 39 H 1.08996 * 109.47407 * 180.02562 * 14 12 11
40 40 H 1.09000 * 109.46986 * 300.00092 * 14 12 11
41 41 H 1.09002 * 109.47075 * 59.99363 * 14 12 11
42 42 H 1.09001 * 109.47630 * 184.99905 * 15 12 11
43 43 H 1.09004 * 109.47346 * 305.00035 * 15 12 11
44 44 H 1.09001 * 109.46917 * 300.00567 * 16 15 12
45 45 H 1.09004 * 109.46741 * 59.99889 * 16 15 12
46 46 H 1.08993 * 109.47322 * 300.00158 * 17 16 15
47 47 H 1.09004 * 109.46881 * 60.00519 * 17 16 15
48 48 H 1.08993 * 109.47422 * 300.00302 * 18 17 16
49 49 H 1.09004 * 109.46754 * 60.00646 * 18 17 16
50 50 H 0.96997 * 120.00419 * 0.02562 * 19 18 17
51 51 H 0.96993 * 120.00263 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 7 4.1314 2.5230 0.0013
6 6 5.0252 2.9699 0.9094
7 6 5.3390 4.2424 0.5704
8 6 4.5734 4.5256 -0.5854
9 6 4.5601 5.7943 -1.3417
10 8 5.2523 6.7255 -0.9791
11 7 3.7804 5.9195 -2.4338
12 6 3.7676 7.1777 -3.1843
13 1 3.8812 8.0136 -2.4941
14 6 4.9222 7.1846 -4.1882
15 6 2.4401 7.3114 -3.9331
16 6 1.2954 7.4298 -2.9248
17 6 -0.0321 7.5629 -3.6736
18 6 -1.1768 7.6807 -2.6652
19 7 -2.4481 7.8075 -3.3823
20 6 -3.6194 7.9278 -2.6832
21 1 -3.6061 7.9289 -1.6032
22 6 -4.8240 8.0474 -3.3625
23 7 -5.9498 8.1636 -2.6906
24 14 -4.8472 8.0450 -5.2304
25 1 -4.9937 6.6513 -5.7217
26 1 -5.9893 8.8624 -5.7124
27 1 -3.5767 8.6191 -5.7420
28 7 3.8788 3.4401 -0.8621
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8901
32 1 1.6886 1.8463 0.8900
33 1 1.6887 1.8464 -0.8899
34 1 3.8574 0.6435 -0.8891
35 1 3.8568 0.6438 0.8909
36 1 5.4197 2.4143 1.7472
37 1 6.0273 4.9029 1.0768
38 1 3.2283 5.1764 -2.7235
39 1 4.9130 8.1208 -4.7462
40 1 5.8680 7.0893 -3.6547
41 1 4.8087 6.3486 -4.8783
42 1 2.4650 8.2022 -4.5608
43 1 2.2847 6.4314 -4.5574
44 1 1.2705 6.5390 -2.2972
45 1 1.4508 8.3098 -2.3006
46 1 -0.0075 8.4534 -4.3015
47 1 -0.1872 6.6826 -4.2975
48 1 -1.2013 6.7899 -2.0377
49 1 -1.0220 8.5608 -2.0411
50 1 -2.4602 7.8062 -4.3522
51 1 -6.7915 8.2476 -3.1653
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001171751554.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:25:11
Heat of formation + Delta-G solvation = -30.607255 kcal
Electronic energy + Delta-G solvation = -28747.872605 eV
Core-core repulsion = 24683.187346 eV
Total energy + Delta-G solvation = -4064.685259 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-43.68286 -40.69001 -39.01502 -38.09362 -36.95213 -35.02964 -34.77876 -33.28114
-32.17151 -31.48755 -30.33700 -29.06809 -27.40099 -25.96050 -25.42376 -23.74852
-23.18614 -22.43458 -22.18634 -21.68213 -21.02138 -19.64341 -18.92342 -18.02431
-17.50091 -17.27851 -17.04515 -16.66922 -16.61439 -16.28937 -16.03871 -15.86680
-15.42557 -15.21356 -14.89691 -14.75668 -14.71806 -14.31676 -14.26083 -14.16913
-13.98583 -13.56481 -13.09469 -13.02194 -12.98049 -12.93750 -12.65279 -12.47346
-12.36759 -12.33090 -12.07395 -11.93718 -11.90164 -11.79740 -11.54314 -11.46083
-11.20965 -10.99482 -10.80709 -10.36675 -10.14794 -9.98422 -9.33721 -8.05985
-5.40531 0.49340 1.15709 1.32166 1.36514 1.41070 1.48866 2.18000
2.36938 2.46760 2.76057 3.24947 3.37217 3.47123 3.74582 3.81168
3.88972 3.97459 4.00387 4.05966 4.14859 4.21045 4.32443 4.37731
4.42660 4.45709 4.55901 4.60273 4.62059 4.64833 4.72636 4.74304
4.78279 4.82672 4.85384 4.90598 4.96040 4.99570 5.09971 5.22672
5.31723 5.32505 5.40386 5.47694 5.56595 5.71402 5.79139 5.97731
6.18358 6.43803 6.86808 7.04758 7.17270 7.80502 8.01682 9.15788
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.007557 B = 0.002594 C = 0.002047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3704.423197 B =10792.176361 C =13675.549477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.399 6.399
3 C 0.050 3.950
4 C 0.124 3.876
5 N -0.278 5.278
6 C 0.007 3.993
7 C -0.203 4.203
8 C -0.042 4.042
9 C 0.601 3.399
10 O -0.572 6.572
11 N -0.702 5.702
12 C 0.140 3.860
13 H 0.072 0.928
14 C -0.156 4.156
15 C -0.115 4.115
16 C -0.108 4.108
17 C -0.115 4.115
18 C 0.151 3.849
19 N -0.760 5.760
20 C -0.243 4.243
21 H 0.051 0.949
22 C -0.067 4.067
23 N -0.985 5.985
24 Si 0.962 3.038
25 H -0.275 1.275
26 H -0.294 1.294
27 H -0.249 1.249
28 N -0.275 5.275
29 H 0.106 0.894
30 H 0.048 0.952
31 H 0.043 0.957
32 H 0.054 0.946
33 H 0.053 0.947
34 H 0.112 0.888
35 H 0.147 0.853
36 H 0.228 0.772
37 H 0.165 0.835
38 H 0.412 0.588
39 H 0.082 0.918
40 H 0.042 0.958
41 H 0.067 0.933
42 H 0.095 0.905
43 H 0.083 0.917
44 H 0.057 0.943
45 H 0.057 0.943
46 H 0.068 0.932
47 H 0.070 0.930
48 H 0.017 0.983
49 H 0.016 0.984
50 H 0.368 0.632
51 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.663 -17.487 2.523 32.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.317 6.317
3 C -0.028 4.028
4 C 0.005 3.995
5 N -0.068 5.068
6 C -0.135 4.135
7 C -0.231 4.231
8 C -0.201 4.201
9 C 0.387 3.613
10 O -0.450 6.450
11 N -0.353 5.353
12 C 0.037 3.963
13 H 0.091 0.909
14 C -0.215 4.215
15 C -0.153 4.153
16 C -0.146 4.146
17 C -0.153 4.153
18 C 0.025 3.975
19 N -0.406 5.406
20 C -0.374 4.374
21 H 0.069 0.931
22 C -0.258 4.258
23 N -0.636 5.636
24 Si 0.789 3.211
25 H -0.200 1.200
26 H -0.220 1.220
27 H -0.173 1.173
28 N -0.112 5.112
29 H 0.125 0.875
30 H 0.066 0.934
31 H 0.062 0.938
32 H 0.073 0.927
33 H 0.072 0.928
34 H 0.130 0.870
35 H 0.165 0.835
36 H 0.245 0.755
37 H 0.183 0.817
38 H 0.248 0.752
39 H 0.101 0.899
40 H 0.061 0.939
41 H 0.086 0.914
42 H 0.113 0.887
43 H 0.102 0.898
44 H 0.076 0.924
45 H 0.075 0.925
46 H 0.087 0.913
47 H 0.089 0.911
48 H 0.035 0.965
49 H 0.034 0.966
50 H 0.201 0.799
51 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 27.301 -17.529 2.193 32.518
hybrid contribution -0.688 0.501 -0.125 0.860
sum 26.613 -17.027 2.068 31.662
Atomic orbital electron populations
1.22951 0.78917 1.04286 1.00747 1.87730 1.21597 1.26743 1.95663
1.22607 0.93096 0.85492 1.01614 1.21948 0.91965 0.77240 1.08343
1.45623 1.30892 1.11789 1.18455 1.23519 0.95929 0.95815 0.98233
1.22030 1.05195 0.97481 0.98379 1.21977 1.03226 0.94057 1.00849
1.17142 0.79269 0.85054 0.79861 1.90754 1.43996 1.40583 1.69647
1.45963 1.44672 1.17289 1.27349 1.21099 0.96116 0.85826 0.93303
0.90944 1.22118 0.97086 1.03571 0.98691 1.21851 0.91211 1.04535
0.97709 1.21434 0.93205 1.01869 0.98139 1.21655 0.93245 1.02563
0.97837 1.20828 0.84578 0.97388 0.94741 1.42747 1.02929 1.90099
1.04831 1.19061 0.85396 1.41377 0.91551 0.93136 1.25616 0.94565
1.02175 1.03427 1.69900 0.98108 1.58824 1.36725 0.85302 0.77882
0.78114 0.79850 1.20043 1.22027 1.17346 1.73429 1.22775 0.97989
1.16990 0.87534 0.93353 0.93831 0.92727 0.92817 0.87029 0.83506
0.75512 0.81713 0.75207 0.89898 0.93869 0.91350 0.88654 0.89841
0.92418 0.92458 0.91284 0.91131 0.96472 0.96612 0.79879 0.93185
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 11.01 113.37 1.25 1.59 16
2 O -0.40 -5.80 10.70 -148.98 -1.59 -7.39 16
3 C 0.05 0.65 6.04 71.98 0.43 1.09 16
4 C 0.12 1.05 6.77 86.38 0.58 1.64 16
5 N -0.28 -3.90 3.41 -347.94 -1.19 -5.09 16
6 C 0.01 0.08 11.40 83.54 0.95 1.04 16
7 C -0.20 -3.74 10.81 22.41 0.24 -3.50 16
8 C -0.04 -0.96 7.13 42.46 0.30 -0.66 16
9 C 0.60 15.72 7.79 86.75 0.68 16.40 16
10 O -0.57 -18.44 16.59 -3.92 -0.06 -18.50 16
11 N -0.70 -14.90 4.53 -445.54 -2.02 -16.92 16
12 C 0.14 2.74 2.57 44.99 0.12 2.85 16
13 H 0.07 1.71 7.58 -2.39 -0.02 1.69 16
14 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16
15 C -0.12 -1.98 4.75 30.59 0.15 -1.84 16
16 C -0.11 -2.50 5.10 30.59 0.16 -2.35 16
17 C -0.12 -3.24 5.33 30.59 0.16 -3.08 16
18 C 0.15 5.97 6.26 86.38 0.54 6.51 16
19 N -0.76 -36.94 5.41 -343.43 -1.86 -38.80 16
20 C -0.24 -14.46 10.47 84.03 0.88 -13.58 16
21 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16
22 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16
23 N -0.99 -64.41 13.97 21.65 0.30 -64.11 16
24 Si 0.96 45.81 27.74 68.60 1.90 47.72 16
25 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16
26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
27 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16
28 N -0.27 -5.55 11.36 -48.17 -0.55 -6.10 16
29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
31 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16
32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.05 0.88 8.09 -2.39 -0.02 0.86 16
34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16
35 H 0.15 0.28 8.04 -2.39 -0.02 0.26 16
36 H 0.23 0.37 8.06 -2.91 -0.02 0.35 16
37 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16
38 H 0.41 7.76 8.33 -92.71 -0.77 6.98 16
39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
40 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
42 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16
43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
44 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16
45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
47 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16
48 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16
49 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16
50 H 0.37 16.64 5.53 -92.71 -0.51 16.13 16
51 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16
Total: -1.00 -81.31 424.78 2.10 -79.20
By element:
Atomic # 1 Polarization: 29.79 SS G_CDS: -0.43 Total: 29.36 kcal
Atomic # 6 Polarization: -6.97 SS G_CDS: 7.59 Total: 0.62 kcal
Atomic # 7 Polarization: -125.71 SS G_CDS: -5.30 Total: -131.01 kcal
Atomic # 8 Polarization: -24.24 SS G_CDS: -1.66 Total: -25.90 kcal
Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.72 kcal
Total: -81.31 2.10 -79.20 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171751554.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.597 kcal
(2) G-P(sol) polarization free energy of solvation -81.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.607 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds