Wall clock time and date at job start Tue Mar 31 2020 21:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.99813 * 2 1 4 4 C 1.54322 * 109.88478 * 121.10024 * 2 1 3 5 5 H 1.08998 * 110.72003 * 215.76144 * 4 2 1 6 6 N 1.46899 * 110.71797 * 338.86193 * 4 2 1 7 7 C 1.46900 * 110.99433 * 202.56128 * 6 4 2 8 8 C 1.50709 * 109.46838 * 180.02562 * 7 6 4 9 9 O 1.21295 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99939 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99886 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99846 * 0.02562 * 11 10 8 13 13 C 1.38948 * 120.00043 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99636 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47031 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47312 * 299.99379 * 15 13 11 18 18 H 1.48498 * 109.47136 * 60.00085 * 15 13 11 19 19 C 1.55158 * 103.10292 * 97.31334 * 4 2 1 20 20 C 1.54905 * 101.58133 * 35.41019 * 19 4 2 21 21 N 1.47320 * 109.84848 * 238.70464 * 2 1 3 22 22 C 1.34784 * 125.61418 * 59.50752 * 21 2 1 23 23 O 1.21279 * 120.00004 * 359.83092 * 22 21 2 24 24 C 1.50697 * 119.99818 * 179.83808 * 22 21 2 25 25 H 1.09001 * 109.88273 * 6.53450 * 24 22 21 26 26 C 1.54316 * 109.88823 * 245.33684 * 24 22 21 27 27 C 1.55141 * 103.01848 * 218.31065 * 26 24 22 28 28 C 1.54899 * 101.65657 * 35.65254 * 27 26 24 29 29 N 1.47445 * 109.89115 * 127.56639 * 24 22 21 30 30 C 1.46896 * 110.99819 * 356.14616 * 29 24 22 31 31 H 1.09004 * 109.47177 * 298.89630 * 1 2 3 32 32 H 1.09001 * 109.47578 * 58.90016 * 1 2 3 33 33 H 1.09008 * 109.47459 * 178.90051 * 1 2 3 34 34 H 1.00899 * 111.00132 * 78.60463 * 6 4 2 35 35 H 1.08997 * 109.47682 * 60.00194 * 7 6 4 36 36 H 1.09001 * 109.47311 * 299.99282 * 7 6 4 37 37 H 0.96998 * 119.99739 * 359.97438 * 10 8 7 38 38 H 0.97001 * 119.99562 * 180.02562 * 14 13 11 39 39 H 1.08993 * 111.00602 * 153.48508 * 19 4 2 40 40 H 1.09000 * 111.00466 * 277.34338 * 19 4 2 41 41 H 1.09006 * 110.36692 * 81.82990 * 20 19 4 42 42 H 1.08998 * 110.37153 * 204.15349 * 20 19 4 43 43 H 1.09004 * 110.70354 * 336.69164 * 26 24 22 44 44 H 1.08998 * 110.71419 * 99.92595 * 26 24 22 45 45 H 1.09001 * 110.98987 * 277.55475 * 27 26 24 46 46 H 1.09007 * 110.98962 * 153.74428 * 27 26 24 47 47 H 1.08997 * 110.37429 * 204.10276 * 28 27 26 48 48 H 1.08998 * 110.37651 * 81.75658 * 28 27 26 49 49 H 1.08996 * 109.47316 * 69.52667 * 30 29 24 50 50 H 1.08999 * 109.47307 * 189.53022 * 30 29 24 51 51 H 1.09000 * 109.46998 * 309.52618 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 2.9640 -0.2814 1.6200 6 7 1.0265 -0.8029 2.2903 7 6 1.6324 -1.0088 3.6125 8 6 0.5492 -1.0586 4.6592 9 8 -0.6132 -0.9344 4.3354 10 7 0.8720 -1.2413 5.9549 11 6 -0.1134 -1.2861 6.9071 12 1 -1.1483 -1.1755 6.6188 13 6 0.2194 -1.4739 8.2430 14 7 1.4787 -1.6090 8.5936 15 14 -1.1232 -1.5356 9.5402 16 1 -0.5108 -1.7444 10.8769 17 1 -1.8762 -0.2557 9.5347 18 1 -2.0500 -2.6565 9.2404 19 6 2.3554 -2.1701 0.6956 20 6 2.8596 -1.8525 -0.7343 21 7 2.0302 -0.7198 -1.1841 22 6 1.7737 -0.3945 -2.4667 23 8 1.0740 0.5628 -2.7212 24 6 2.3563 -1.2205 -3.5844 25 1 2.8563 -2.0983 -3.1749 26 6 3.3578 -0.3728 -4.3966 27 6 3.1003 -0.8309 -5.8563 28 6 1.5697 -1.0690 -5.8442 29 7 1.2868 -1.6384 -4.5094 30 6 -0.0298 -1.2068 -4.0212 31 1 -0.3634 0.4966 0.8997 32 1 -0.3634 0.5308 -0.8799 33 1 -0.3634 -1.0275 -0.0197 34 1 0.3432 -1.5179 2.0902 35 1 2.3130 -0.1863 3.8325 36 1 2.1847 -1.9485 3.6169 37 1 1.8015 -1.3410 6.2137 38 1 1.7110 -1.7404 9.5262 39 1 3.1317 -2.6592 1.2839 40 1 1.4502 -2.7765 0.6648 41 1 3.9113 -1.5668 -0.7109 42 1 2.7137 -2.7125 -1.3878 43 1 3.1442 0.6900 -4.2828 44 1 4.3822 -0.5952 -4.0980 45 1 3.6373 -1.7535 -6.0764 46 1 3.3679 -0.0467 -6.5646 47 1 1.2894 -1.7756 -6.6253 48 1 1.0380 -0.1266 -5.9751 49 1 -0.1069 -0.1221 -4.0948 50 1 -0.8106 -1.6684 -4.6256 51 1 -0.1487 -1.5098 -2.9810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178355813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:01 Heat of formation + Delta-G solvation = -44.501298 kcal Electronic energy + Delta-G solvation = -30197.226076 eV Core-core repulsion = 26131.938326 eV Total energy + Delta-G solvation = -4065.287750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.14687 -39.35072 -38.16560 -37.22438 -34.81451 -33.82867 -32.42488 -31.56029 -31.22829 -30.87578 -29.29252 -26.70264 -25.86613 -25.26404 -24.07619 -23.41546 -22.10323 -21.64915 -20.03538 -19.33099 -18.95450 -17.97547 -17.75559 -16.47249 -16.22726 -16.01829 -15.86179 -15.51074 -15.17085 -14.63219 -14.54452 -14.25521 -14.09857 -13.75512 -13.69400 -13.61936 -13.11382 -12.92626 -12.88247 -12.68724 -12.48650 -12.24832 -12.20137 -12.05952 -11.77710 -11.70739 -11.55937 -11.51411 -11.47010 -11.33930 -11.20242 -11.03748 -10.85417 -10.80501 -10.45603 -10.23224 -10.08947 -9.52019 -8.88535 -8.54466 -8.48091 -8.10239 -7.98207 -6.43729 -3.84563 2.31187 2.69267 3.18985 3.24840 3.29304 3.68586 3.87848 3.98507 4.05638 4.20093 4.23014 4.29825 4.38681 4.61160 4.69915 4.84753 4.88881 5.03911 5.05059 5.10805 5.12364 5.19132 5.23123 5.27709 5.33008 5.36508 5.46130 5.48009 5.49050 5.55828 5.61138 5.66943 5.74618 5.76048 5.81905 5.83740 5.90409 5.95453 6.11334 6.23619 6.37399 6.49171 6.56774 6.60693 7.12962 7.32286 7.53283 7.55510 7.95056 8.03868 8.58813 9.15777 9.51778 10.03094 10.73839 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.001929 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.426560 B =14511.648662 C =14871.893184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.077 0.923 4 C 0.082 3.918 5 H 0.094 0.906 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.284 1.284 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.167 4.167 20 C 0.100 3.900 21 N -0.611 5.611 22 C 0.520 3.480 23 O -0.535 6.535 24 C 0.053 3.947 25 H 0.102 0.898 26 C -0.128 4.128 27 C -0.126 4.126 28 C 0.038 3.962 29 N -0.510 5.510 30 C 0.005 3.995 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.354 0.646 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 -1.604 -25.406 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.095 0.905 4 C -0.030 4.030 5 H 0.112 0.888 6 N -0.285 5.285 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.210 1.210 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.206 4.206 20 C -0.024 4.024 21 N -0.346 5.346 22 C 0.308 3.692 23 O -0.412 6.412 24 C -0.058 4.058 25 H 0.120 0.880 26 C -0.167 4.167 27 C -0.164 4.164 28 C -0.090 4.090 29 N -0.235 5.235 30 C -0.143 4.143 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.175 0.825 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.778 -0.871 -25.563 26.734 hybrid contribution 0.322 -0.340 1.058 1.158 sum 8.100 -1.212 -24.505 25.837 Atomic orbital electron populations 1.21937 0.93598 1.02027 1.03387 1.21584 0.95955 0.95468 0.82949 0.90461 1.22622 0.95088 0.93867 0.91406 0.88825 1.60056 1.13713 1.55033 0.99725 1.21711 0.96606 1.00595 0.89287 1.19789 0.89663 0.84535 0.83510 1.90533 1.20065 1.55184 1.80924 1.41850 1.10001 1.63113 1.04972 1.19652 0.90447 1.46600 0.86245 0.87966 1.25263 0.97189 0.97245 0.98232 1.69605 1.16416 1.49496 1.18790 0.85913 0.80194 0.79057 0.79030 1.20979 1.19868 1.19922 1.23585 1.02713 0.98900 0.95446 1.22322 0.94897 0.89252 0.95897 1.48825 1.50169 1.30387 1.05245 1.20652 0.81014 0.85096 0.82463 1.90670 1.38460 1.29266 1.82815 1.22679 0.93828 0.97455 0.91871 0.88022 1.22738 0.98807 1.00211 0.94931 1.22697 0.95834 1.01869 0.96034 1.23162 0.95778 0.98730 0.91326 1.64067 1.01997 1.55757 1.01639 1.22949 0.89887 1.01115 1.00337 0.89357 0.92268 0.93312 0.82472 0.89499 0.93713 0.77468 0.91816 0.89526 0.90156 0.90986 0.90320 0.90417 0.90076 0.90329 0.90371 0.89769 0.92938 0.91670 0.91781 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.22 37.16 0.31 -1.78 16 2 C 0.14 1.74 3.50 -66.79 -0.23 1.51 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.08 0.92 3.11 -65.88 -0.21 0.71 16 5 H 0.09 0.97 7.86 -51.93 -0.41 0.57 16 6 N -0.65 -9.70 4.44 -106.05 -0.47 -10.17 16 7 C 0.05 0.83 6.04 -4.97 -0.03 0.80 16 8 C 0.44 10.05 7.82 -10.98 -0.09 9.96 16 9 O -0.58 -15.49 15.78 5.54 0.09 -15.40 16 10 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 11 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 12 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 15 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.17 -1.49 6.67 -24.58 -0.16 -1.65 16 20 C 0.10 0.78 6.47 -2.53 -0.02 0.77 16 21 N -0.61 -6.51 3.09 -162.80 -0.50 -7.01 16 22 C 0.52 6.05 4.73 -10.98 -0.05 6.00 16 23 O -0.54 -7.88 12.68 5.56 0.07 -7.81 16 24 C 0.05 0.49 3.64 -67.88 -0.25 0.24 16 25 H 0.10 0.81 6.08 -51.93 -0.32 0.49 16 26 C -0.13 -0.98 6.45 -24.91 -0.16 -1.14 16 27 C -0.13 -0.80 7.08 -24.60 -0.17 -0.97 16 28 C 0.04 0.30 6.73 -2.30 -0.02 0.28 16 29 N -0.51 -5.01 5.44 -232.96 -1.27 -6.28 16 30 C 0.01 0.06 8.19 60.06 0.49 0.55 16 31 H 0.09 1.36 7.40 -51.93 -0.38 0.98 16 32 H 0.06 0.88 6.77 -51.93 -0.35 0.53 16 33 H 0.05 0.66 7.93 -51.92 -0.41 0.25 16 34 H 0.35 5.57 7.36 -39.29 -0.29 5.28 16 35 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.53 6.84 -51.93 -0.36 0.18 16 43 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.45 7.63 -51.93 -0.40 0.06 16 49 H 0.06 0.83 5.80 -51.93 -0.30 0.53 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.78 6.96 -51.93 -0.36 0.42 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -32.03 395.30 -9.75 -41.77 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -8.44 Total: 13.19 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.83 Total: 7.36 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -1.58 Total: -60.98 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.21 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.03 -9.75 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178355813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.726 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds