Wall clock time and date at job start Tue Mar 31 2020 21:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.99813 * 2 1 4 4 C 1.54322 * 109.88478 * 121.10024 * 2 1 3 5 5 H 1.08998 * 110.72003 * 215.76144 * 4 2 1 6 6 N 1.46899 * 110.71797 * 338.86193 * 4 2 1 7 7 C 1.46900 * 110.99433 * 202.56128 * 6 4 2 8 8 C 1.50709 * 109.46838 * 180.02562 * 7 6 4 9 9 O 1.21295 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99939 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99886 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99846 * 0.02562 * 11 10 8 13 13 C 1.38948 * 120.00043 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99636 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47031 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47312 * 299.99379 * 15 13 11 18 18 H 1.48498 * 109.47136 * 60.00085 * 15 13 11 19 19 C 1.55158 * 103.10292 * 97.31334 * 4 2 1 20 20 C 1.54905 * 101.58133 * 35.41019 * 19 4 2 21 21 N 1.47320 * 109.84848 * 238.70464 * 2 1 3 22 22 C 1.34784 * 125.61418 * 59.50752 * 21 2 1 23 23 O 1.21279 * 120.00004 * 359.83092 * 22 21 2 24 24 C 1.50697 * 119.99818 * 179.83808 * 22 21 2 25 25 H 1.09001 * 109.88273 * 6.53450 * 24 22 21 26 26 C 1.54316 * 109.88823 * 245.33684 * 24 22 21 27 27 C 1.55141 * 103.01848 * 218.31065 * 26 24 22 28 28 C 1.54899 * 101.65657 * 35.65254 * 27 26 24 29 29 N 1.47445 * 109.89115 * 127.56639 * 24 22 21 30 30 C 1.46896 * 110.99819 * 356.14616 * 29 24 22 31 31 H 1.09004 * 109.47177 * 298.89630 * 1 2 3 32 32 H 1.09001 * 109.47578 * 58.90016 * 1 2 3 33 33 H 1.09008 * 109.47459 * 178.90051 * 1 2 3 34 34 H 1.00899 * 111.00132 * 78.60463 * 6 4 2 35 35 H 1.08997 * 109.47682 * 60.00194 * 7 6 4 36 36 H 1.09001 * 109.47311 * 299.99282 * 7 6 4 37 37 H 0.96998 * 119.99739 * 359.97438 * 10 8 7 38 38 H 0.97001 * 119.99562 * 180.02562 * 14 13 11 39 39 H 1.08993 * 111.00602 * 153.48508 * 19 4 2 40 40 H 1.09000 * 111.00466 * 277.34338 * 19 4 2 41 41 H 1.09006 * 110.36692 * 81.82990 * 20 19 4 42 42 H 1.08998 * 110.37153 * 204.15349 * 20 19 4 43 43 H 1.09004 * 110.70354 * 336.69164 * 26 24 22 44 44 H 1.08998 * 110.71419 * 99.92595 * 26 24 22 45 45 H 1.09001 * 110.98987 * 277.55475 * 27 26 24 46 46 H 1.09007 * 110.98962 * 153.74428 * 27 26 24 47 47 H 1.08997 * 110.37429 * 204.10276 * 28 27 26 48 48 H 1.08998 * 110.37651 * 81.75658 * 28 27 26 49 49 H 1.08996 * 109.47316 * 69.52667 * 30 29 24 50 50 H 1.08999 * 109.47307 * 189.53022 * 30 29 24 51 51 H 1.09000 * 109.46998 * 309.52618 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 2.9640 -0.2814 1.6200 6 7 1.0265 -0.8029 2.2903 7 6 1.6324 -1.0088 3.6125 8 6 0.5492 -1.0586 4.6592 9 8 -0.6132 -0.9344 4.3354 10 7 0.8720 -1.2413 5.9549 11 6 -0.1134 -1.2861 6.9071 12 1 -1.1483 -1.1755 6.6188 13 6 0.2194 -1.4739 8.2430 14 7 1.4787 -1.6090 8.5936 15 14 -1.1232 -1.5356 9.5402 16 1 -0.5108 -1.7444 10.8769 17 1 -1.8762 -0.2557 9.5347 18 1 -2.0500 -2.6565 9.2404 19 6 2.3554 -2.1701 0.6956 20 6 2.8596 -1.8525 -0.7343 21 7 2.0302 -0.7198 -1.1841 22 6 1.7737 -0.3945 -2.4667 23 8 1.0740 0.5628 -2.7212 24 6 2.3563 -1.2205 -3.5844 25 1 2.8563 -2.0983 -3.1749 26 6 3.3578 -0.3728 -4.3966 27 6 3.1003 -0.8309 -5.8563 28 6 1.5697 -1.0690 -5.8442 29 7 1.2868 -1.6384 -4.5094 30 6 -0.0298 -1.2068 -4.0212 31 1 -0.3634 0.4966 0.8997 32 1 -0.3634 0.5308 -0.8799 33 1 -0.3634 -1.0275 -0.0197 34 1 0.3432 -1.5179 2.0902 35 1 2.3130 -0.1863 3.8325 36 1 2.1847 -1.9485 3.6169 37 1 1.8015 -1.3410 6.2137 38 1 1.7110 -1.7404 9.5262 39 1 3.1317 -2.6592 1.2839 40 1 1.4502 -2.7765 0.6648 41 1 3.9113 -1.5668 -0.7109 42 1 2.7137 -2.7125 -1.3878 43 1 3.1442 0.6900 -4.2828 44 1 4.3822 -0.5952 -4.0980 45 1 3.6373 -1.7535 -6.0764 46 1 3.3679 -0.0467 -6.5646 47 1 1.2894 -1.7756 -6.6253 48 1 1.0380 -0.1266 -5.9751 49 1 -0.1069 -0.1221 -4.0948 50 1 -0.8106 -1.6684 -4.6256 51 1 -0.1487 -1.5098 -2.9810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178355813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:00 Heat of formation + Delta-G solvation = -69.019662 kcal Electronic energy + Delta-G solvation = -30198.289272 eV Core-core repulsion = 26131.938326 eV Total energy + Delta-G solvation = -4066.350946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.98555 -40.40327 -39.74210 -38.14375 -36.19560 -35.56545 -33.27761 -33.11475 -32.48390 -31.80099 -30.09060 -28.15882 -26.65364 -26.53404 -25.52233 -24.33446 -22.86024 -22.23145 -21.16287 -20.89229 -19.92524 -19.80663 -18.62155 -17.77558 -17.28043 -16.95679 -16.84875 -16.59568 -16.31304 -16.21299 -15.81086 -15.44761 -15.25537 -15.06633 -14.72013 -14.51175 -14.22169 -13.99528 -13.76942 -13.73006 -13.50886 -13.48550 -13.37837 -13.19133 -12.96146 -12.84225 -12.69400 -12.59397 -12.48894 -12.42472 -12.19465 -12.12351 -12.07464 -11.86393 -11.80614 -11.62265 -11.49364 -10.97751 -10.33467 -10.00220 -9.75283 -9.34726 -9.26577 -8.45945 -5.94172 1.39861 1.41985 1.45008 1.52387 1.84223 2.07521 2.29806 2.91009 2.95952 3.21623 3.28759 3.44537 3.54389 3.65742 3.69365 3.84374 4.05106 4.08629 4.15809 4.26189 4.31095 4.33598 4.34256 4.45063 4.50040 4.53066 4.56036 4.61929 4.64113 4.71943 4.74649 4.78619 4.86194 4.95149 4.97617 4.99185 5.04305 5.06822 5.09776 5.24762 5.35553 5.38374 5.41729 5.76299 5.83703 5.90108 6.11310 6.35196 6.48340 6.61716 7.07676 7.14029 7.58255 8.14035 8.71016 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.001929 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.426560 B =14511.648662 C =14871.893184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.145 3.855 3 H 0.066 0.934 4 C 0.086 3.914 5 H 0.112 0.888 6 N -0.670 5.670 7 C 0.068 3.932 8 C 0.436 3.564 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.159 4.159 20 C 0.100 3.900 21 N -0.611 5.611 22 C 0.514 3.486 23 O -0.575 6.575 24 C 0.054 3.946 25 H 0.123 0.877 26 C -0.127 4.127 27 C -0.118 4.118 28 C 0.032 3.968 29 N -0.514 5.514 30 C 0.016 3.984 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.347 0.653 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.038 0.962 49 H 0.042 0.958 50 H 0.073 0.927 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.543 -3.076 -26.180 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.024 4.024 5 H 0.130 0.870 6 N -0.302 5.302 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.197 1.197 19 C -0.198 4.198 20 C -0.022 4.022 21 N -0.345 5.345 22 C 0.303 3.697 23 O -0.455 6.455 24 C -0.057 4.057 25 H 0.141 0.859 26 C -0.165 4.165 27 C -0.155 4.155 28 C -0.096 4.096 29 N -0.238 5.238 30 C -0.133 4.133 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.418 -2.363 -26.345 28.429 hybrid contribution -0.518 0.148 1.230 1.343 sum 9.899 -2.215 -25.115 27.086 Atomic orbital electron populations 1.21753 0.95398 1.01153 1.01360 1.21447 0.94431 0.95576 0.84476 0.91607 1.22630 0.94384 0.95647 0.89783 0.87036 1.59980 1.14963 1.55186 1.00049 1.21555 0.94252 1.02903 0.87710 1.20965 0.90657 0.82035 0.83952 1.90506 1.22604 1.56424 1.81665 1.41911 1.09699 1.63906 1.05485 1.19600 0.90190 1.48805 0.87753 0.90511 1.25996 0.99397 0.96341 0.99474 1.69658 1.17500 1.49296 1.19483 0.85025 0.77716 0.78815 0.77000 1.19444 1.19955 1.19748 1.23539 1.03060 0.96981 0.96251 1.22565 0.95623 0.88743 0.95304 1.48877 1.50142 1.30895 1.04541 1.21208 0.80447 0.84829 0.83192 1.90660 1.40241 1.31137 1.83456 1.22844 0.93869 0.97974 0.91037 0.85933 1.22764 0.99563 0.98620 0.95579 1.22711 0.94358 1.03055 0.95411 1.23278 0.97213 0.98401 0.90682 1.64156 1.01449 1.55696 1.02522 1.22758 0.91329 0.99613 0.99554 0.91450 0.94049 0.93566 0.83318 0.87537 0.90679 0.76864 0.91313 0.87221 0.91219 0.88295 0.88614 0.92610 0.87619 0.88595 0.89150 0.88406 0.94343 0.93951 0.90835 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.22 71.98 0.59 -3.43 16 2 C 0.14 3.46 3.50 45.28 0.16 3.62 16 3 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 4 C 0.09 1.77 3.11 46.10 0.14 1.91 16 5 H 0.11 1.94 7.86 -2.39 -0.02 1.93 16 6 N -0.67 -19.38 4.44 -489.44 -2.17 -21.56 16 7 C 0.07 2.10 6.04 85.56 0.52 2.62 16 8 C 0.44 20.06 7.82 87.66 0.69 20.75 16 9 O -0.63 -34.21 15.78 -3.08 -0.05 -34.26 16 10 N -0.57 -28.65 5.29 -306.97 -1.62 -30.28 16 11 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 14 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 15 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 C -0.16 -2.34 6.67 31.99 0.21 -2.13 16 20 C 0.10 1.22 6.47 86.85 0.56 1.79 16 21 N -0.61 -12.24 3.09 -787.36 -2.43 -14.67 16 22 C 0.51 11.78 4.73 87.65 0.41 12.19 16 23 O -0.58 -17.71 12.68 -3.03 -0.04 -17.75 16 24 C 0.05 0.89 3.64 44.51 0.16 1.05 16 25 H 0.12 1.51 6.08 -2.39 -0.01 1.50 16 26 C -0.13 -1.65 6.45 31.77 0.20 -1.45 16 27 C -0.12 -1.18 7.08 31.98 0.23 -0.96 16 28 C 0.03 0.46 6.73 86.77 0.58 1.04 16 29 N -0.51 -9.52 5.44 -890.96 -4.85 -14.37 16 30 C 0.02 0.36 8.19 127.69 1.05 1.40 16 31 H 0.07 2.22 7.40 -2.38 -0.02 2.20 16 32 H 0.04 1.32 6.77 -2.39 -0.02 1.31 16 33 H 0.05 1.32 7.93 -2.38 -0.02 1.30 16 34 H 0.35 10.92 7.36 -89.69 -0.66 10.26 16 35 H 0.11 2.94 8.08 -2.39 -0.02 2.92 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 38 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.22 7.79 -2.39 -0.02 1.20 16 41 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.10 0.91 6.84 -2.39 -0.02 0.90 16 43 H 0.06 0.99 7.70 -2.38 -0.02 0.97 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.04 0.67 7.63 -2.39 -0.02 0.65 16 49 H 0.04 1.16 5.80 -2.39 -0.01 1.14 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.05 1.19 6.96 -2.39 -0.02 1.17 16 Total: -1.00 -72.74 395.30 -2.51 -75.24 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.44 Total: 41.12 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.79 Total: 20.26 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -10.79 Total: -129.42 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.09 Total: -52.01 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.74 -2.51 -75.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178355813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.225 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds