Wall clock time and date at job start Tue Mar 31 2020 21:50:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.99271 * 2 1
4 4 C 1.54325 * 109.87747 * 121.08780 * 2 1 3
5 5 H 1.08999 * 110.87153 * 215.65647 * 4 2 1
6 6 N 1.46895 * 110.72856 * 338.86901 * 4 2 1
7 7 C 1.46893 * 111.00318 * 199.97434 * 6 4 2
8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4
9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6
10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6
11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7
12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8
13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8
14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10
15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.47174 * 270.00316 * 15 13 11
17 17 H 1.48501 * 109.47062 * 30.00267 * 15 13 11
18 18 H 1.48504 * 109.46913 * 150.00066 * 15 13 11
19 19 C 1.55161 * 102.94024 * 97.23291 * 4 2 1
20 20 C 1.54906 * 101.58261 * 35.49543 * 19 4 2
21 21 N 1.47014 * 109.88563 * 238.89945 * 2 1 3
22 22 C 1.34778 * 125.64671 * 59.49289 * 21 2 1
23 23 O 1.21276 * 120.00088 * 0.02562 * 22 21 2
24 24 C 1.50699 * 119.99976 * 180.02562 * 22 21 2
25 25 H 1.09000 * 109.90754 * 318.89867 * 24 22 21
26 26 C 1.53991 * 109.91831 * 79.99429 * 24 22 21
27 27 C 1.54596 * 105.14061 * 120.57948 * 26 24 22
28 28 C 1.54932 * 102.92021 * 21.95812 * 27 26 24
29 29 N 1.47896 * 109.91907 * 197.58721 * 24 22 21
30 30 C 1.46898 * 111.00078 * 94.79909 * 29 24 22
31 31 H 1.08999 * 109.47399 * 298.90543 * 1 2 3
32 32 H 1.09002 * 109.46733 * 58.91441 * 1 2 3
33 33 H 1.09003 * 109.46551 * 178.90347 * 1 2 3
34 34 H 1.00899 * 111.00063 * 76.01610 * 6 4 2
35 35 H 1.09002 * 109.47091 * 59.99845 * 7 6 4
36 36 H 1.09000 * 109.47343 * 299.99463 * 7 6 4
37 37 H 0.96996 * 120.00564 * 359.97438 * 10 8 7
38 38 H 0.97001 * 119.99781 * 179.97438 * 14 13 11
39 39 H 1.08991 * 111.00878 * 153.57302 * 19 4 2
40 40 H 1.09001 * 111.00199 * 277.38764 * 19 4 2
41 41 H 1.09000 * 110.36847 * 81.83007 * 20 19 4
42 42 H 1.09003 * 110.37119 * 204.04581 * 20 19 4
43 43 H 1.09003 * 110.31568 * 239.49530 * 26 24 22
44 44 H 1.08999 * 110.30981 * 1.56421 * 26 24 22
45 45 H 1.09003 * 110.72740 * 140.31640 * 27 26 24
46 46 H 1.09002 * 110.72455 * 263.42433 * 27 26 24
47 47 H 1.09000 * 110.67162 * 81.02007 * 28 27 26
48 48 H 1.09003 * 110.67108 * 203.98851 * 28 27 26
49 49 H 1.09001 * 109.46940 * 60.00661 * 30 29 24
50 50 H 1.09002 * 109.47079 * 179.97438 * 30 29 24
51 51 H 1.08992 * 109.47484 * 300.00515 * 30 29 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0548 -0.7494 1.2429
5 1 2.9650 -0.2842 1.6212
6 7 1.0264 -0.8027 2.2905
7 6 1.6267 -1.0694 3.6044
8 6 0.5436 -1.1162 4.6513
9 8 -0.6143 -0.9438 4.3341
10 7 0.8619 -1.3486 5.9401
11 6 -0.1235 -1.3916 6.8924
12 1 -1.1546 -1.2389 6.6099
13 6 0.2045 -1.6318 8.2211
14 7 1.4592 -1.8181 8.5649
15 14 -1.1379 -1.6897 9.5188
16 1 -1.3476 -0.3290 10.0752
17 1 -2.4003 -2.1730 8.9039
18 1 -0.7331 -2.6134 10.6089
19 6 2.3520 -2.1694 0.6926
20 6 2.8569 -1.8498 -0.7365
21 7 2.0301 -0.7141 -1.1838
22 6 1.7744 -0.3853 -2.4656
23 8 1.0773 0.5744 -2.7180
24 6 2.3549 -1.2103 -3.5852
25 1 3.3847 -1.4805 -3.3518
26 6 1.5125 -2.4829 -3.7903
27 6 1.0137 -2.4058 -5.2516
28 6 2.0342 -1.4479 -5.9159
29 7 2.3044 -0.4478 -4.8514
30 6 3.5728 0.2516 -5.0958
31 1 -0.3634 0.4967 0.8996
32 1 -0.3633 0.5306 -0.8801
33 1 -0.3632 -1.0275 -0.0197
34 1 0.3203 -1.4887 2.0695
35 1 2.3336 -0.2765 3.8486
36 1 2.1485 -2.0260 3.5780
37 1 1.7879 -1.4861 6.1939
38 1 1.6881 -1.9853 9.4925
39 1 3.1270 -2.6617 1.2799
40 1 1.4454 -2.7738 0.6612
41 1 3.9092 -1.5666 -0.7126
42 1 2.7107 -2.7087 -1.3915
43 1 2.1277 -3.3712 -3.6470
44 1 0.6683 -2.4931 -3.1009
45 1 1.0443 -3.3886 -5.7221
46 1 0.0067 -1.9907 -5.2941
47 1 2.9463 -1.9820 -6.1823
48 1 1.5989 -0.9708 -6.7940
49 1 4.3825 -0.4755 -5.1578
50 1 3.5085 0.8039 -6.0333
51 1 3.7690 0.9448 -4.2779
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001178355900.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:50:04
Heat of formation + Delta-G solvation = -74.770996 kcal
Electronic energy + Delta-G solvation = -30001.068228 eV
Core-core repulsion = 25934.467886 eV
Total energy + Delta-G solvation = -4066.600343 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.63705 -40.29182 -39.68187 -38.30280 -36.16803 -35.52786 -33.29649 -33.19051
-32.41756 -31.74257 -30.02255 -28.13704 -26.65265 -26.50349 -25.45762 -24.26931
-22.77076 -22.14259 -21.15452 -20.96807 -19.91692 -19.80498 -18.53341 -17.71574
-17.21201 -16.93945 -16.80345 -16.62365 -16.30486 -15.88664 -15.66512 -15.39941
-15.17356 -14.97828 -14.66218 -14.56975 -14.26884 -14.09632 -13.89907 -13.64744
-13.58067 -13.47237 -13.30222 -13.09770 -12.97416 -12.90450 -12.69749 -12.52432
-12.49016 -12.40448 -12.32809 -12.11887 -12.02576 -11.83426 -11.72676 -11.68416
-11.49408 -10.69448 -10.32217 -9.99508 -9.64958 -9.39520 -9.25570 -8.45632
-5.93688 1.38409 1.42399 1.54550 1.65389 1.83157 2.08184 2.30161
2.91379 3.03996 3.22095 3.37034 3.47523 3.58376 3.64300 3.77547
3.89209 4.01272 4.08135 4.16411 4.23591 4.32641 4.36177 4.40474
4.45854 4.46893 4.53454 4.54778 4.63398 4.65938 4.68730 4.73623
4.79392 4.82314 4.94760 4.98011 5.00376 5.08432 5.09169 5.10907
5.21720 5.37947 5.41539 5.42524 5.80847 5.91231 6.00880 6.12589
6.37698 6.58569 6.62377 7.14719 7.26443 7.58975 8.14782 8.71580
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.033215 B = 0.001894 C = 0.001883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 842.780868 B =14781.978133 C =14866.638306
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.146 3.854
3 H 0.061 0.939
4 C 0.087 3.913
5 H 0.110 0.890
6 N -0.671 5.671
7 C 0.068 3.932
8 C 0.437 3.563
9 O -0.625 6.625
10 N -0.573 5.573
11 C -0.332 4.332
12 H 0.077 0.923
13 C -0.013 4.013
14 N -0.919 5.919
15 Si 0.990 3.010
16 H -0.273 1.273
17 H -0.274 1.274
18 H -0.270 1.270
19 C -0.159 4.159
20 C 0.101 3.899
21 N -0.617 5.617
22 C 0.529 3.471
23 O -0.566 6.566
24 C 0.058 3.942
25 H 0.096 0.904
26 C -0.117 4.117
27 C -0.122 4.122
28 C 0.039 3.961
29 N -0.534 5.534
30 C 0.020 3.980
31 H 0.066 0.934
32 H 0.038 0.962
33 H 0.048 0.952
34 H 0.347 0.653
35 H 0.106 0.894
36 H 0.076 0.924
37 H 0.397 0.603
38 H 0.277 0.723
39 H 0.108 0.892
40 H 0.072 0.928
41 H 0.092 0.908
42 H 0.097 0.903
43 H 0.109 0.891
44 H 0.059 0.941
45 H 0.102 0.898
46 H 0.058 0.942
47 H 0.068 0.932
48 H 0.086 0.914
49 H 0.049 0.951
50 H 0.078 0.922
51 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.890 -5.902 -26.364 29.518
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.042 3.958
3 H 0.079 0.921
4 C -0.023 4.023
5 H 0.128 0.872
6 N -0.302 5.302
7 C -0.064 4.064
8 C 0.224 3.776
9 O -0.511 6.511
10 N -0.211 5.211
11 C -0.462 4.462
12 H 0.095 0.905
13 C -0.212 4.212
14 N -0.560 5.560
15 Si 0.814 3.186
16 H -0.199 1.199
17 H -0.199 1.199
18 H -0.195 1.195
19 C -0.198 4.198
20 C -0.021 4.021
21 N -0.352 5.352
22 C 0.317 3.683
23 O -0.443 6.443
24 C -0.054 4.054
25 H 0.114 0.886
26 C -0.156 4.156
27 C -0.160 4.160
28 C -0.088 4.088
29 N -0.259 5.259
30 C -0.128 4.128
31 H 0.085 0.915
32 H 0.057 0.943
33 H 0.067 0.933
34 H 0.167 0.833
35 H 0.124 0.876
36 H 0.094 0.906
37 H 0.231 0.769
38 H 0.087 0.913
39 H 0.127 0.873
40 H 0.091 0.909
41 H 0.110 0.890
42 H 0.115 0.885
43 H 0.127 0.873
44 H 0.078 0.922
45 H 0.120 0.880
46 H 0.076 0.924
47 H 0.086 0.914
48 H 0.104 0.896
49 H 0.068 0.932
50 H 0.097 0.903
51 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 10.415 -4.196 -26.489 28.771
hybrid contribution 0.345 -1.040 1.042 1.512
sum 10.760 -5.236 -25.448 28.121
Atomic orbital electron populations
1.21770 0.95491 1.01279 1.01283 1.21336 0.94388 0.95518 0.84550
0.92063 1.22616 0.94377 0.95693 0.89663 0.87172 1.59977 1.13631
1.56414 1.00213 1.21545 0.94384 1.02597 0.87881 1.20964 0.90622
0.81992 0.83984 1.90506 1.22933 1.56064 1.81639 1.41917 1.10009
1.63152 1.05983 1.19634 0.90484 1.47861 0.88234 0.90519 1.25996
0.99404 0.96347 0.99494 1.69662 1.17789 1.48696 1.19833 0.84964
0.77777 0.78419 0.77398 1.19864 1.19890 1.19462 1.23543 1.03127
0.96986 0.96191 1.22507 0.95388 0.88754 0.95462 1.48705 1.50968
1.31165 1.04369 1.20761 0.80347 0.84618 0.82529 1.90668 1.39636
1.30420 1.83618 1.22340 1.00546 0.92957 0.89562 0.88649 1.22389
0.99487 0.95506 0.98174 1.22502 0.98757 1.00503 0.94207 1.23309
0.98982 0.92156 0.94373 1.64225 1.33897 1.26516 1.01259 1.22505
0.89121 0.98720 1.02423 0.91468 0.94257 0.93267 0.83259 0.87614
0.90625 0.76867 0.91333 0.87314 0.90936 0.88979 0.88496 0.87291
0.92233 0.87998 0.92359 0.91369 0.89611 0.93219 0.90311 0.93037
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.19 8.19 71.98 0.59 -3.60 16
2 C 0.15 3.64 3.48 45.35 0.16 3.80 16
3 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
4 C 0.09 1.82 3.11 46.11 0.14 1.97 16
5 H 0.11 1.99 7.89 -2.39 -0.02 1.98 16
6 N -0.67 -19.56 4.49 -489.45 -2.20 -21.76 16
7 C 0.07 2.11 6.02 85.56 0.52 2.63 16
8 C 0.44 20.11 7.82 87.66 0.69 20.80 16
9 O -0.62 -34.23 15.78 -3.05 -0.05 -34.28 16
10 N -0.57 -28.69 5.29 -306.98 -1.62 -30.31 16
11 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16
12 H 0.08 4.64 7.16 -2.92 -0.02 4.62 16
13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
14 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16
15 Si 0.99 42.81 29.55 68.60 2.03 44.83 16
16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
19 C -0.16 -2.30 6.63 31.99 0.21 -2.09 16
20 C 0.10 1.22 6.43 86.85 0.56 1.78 16
21 N -0.62 -12.82 3.08 -788.07 -2.43 -15.25 16
22 C 0.53 13.09 6.67 87.66 0.58 13.68 16
23 O -0.57 -19.85 15.46 -3.02 -0.05 -19.89 16
24 C 0.06 0.96 2.11 44.31 0.09 1.05 16
25 H 0.10 1.11 7.34 -2.39 -0.02 1.09 16
26 C -0.12 -1.48 5.80 31.47 0.18 -1.30 16
27 C -0.12 -1.44 7.06 31.80 0.22 -1.22 16
28 C 0.04 0.47 6.56 86.65 0.57 1.04 16
29 N -0.53 -9.88 4.75 -888.46 -4.22 -14.10 16
30 C 0.02 0.30 9.40 127.69 1.20 1.50 16
31 H 0.07 2.25 7.40 -2.39 -0.02 2.24 16
32 H 0.04 1.32 6.77 -2.39 -0.02 1.31 16
33 H 0.05 1.41 7.88 -2.39 -0.02 1.39 16
34 H 0.35 10.93 7.25 -89.69 -0.65 10.28 16
35 H 0.11 2.95 8.09 -2.39 -0.02 2.93 16
36 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16
37 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16
38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16
39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
40 H 0.07 1.20 7.81 -2.39 -0.02 1.18 16
41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
42 H 0.10 0.78 7.02 -2.39 -0.02 0.76 16
43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.06 0.99 7.68 -2.39 -0.02 0.97 16
45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
47 H 0.07 0.55 7.96 -2.39 -0.02 0.53 16
48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
49 H 0.05 0.49 8.01 -2.39 -0.02 0.47 16
50 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
51 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
Total: -1.00 -76.68 403.11 -1.71 -78.39
By element:
Atomic # 1 Polarization: 39.46 SS G_CDS: -0.45 Total: 39.01 kcal
Atomic # 6 Polarization: 14.94 SS G_CDS: 7.00 Total: 21.93 kcal
Atomic # 7 Polarization: -119.80 SS G_CDS: -10.19 Total: -129.99 kcal
Atomic # 8 Polarization: -54.08 SS G_CDS: -0.09 Total: -54.17 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal
Total: -76.68 -1.71 -78.39 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001178355900.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.618 kcal
(2) G-P(sol) polarization free energy of solvation -76.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds