Wall clock time and date at job start Tue Mar 31 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87482 * 2 1 4 4 C 1.54325 * 109.88065 * 121.01765 * 2 1 3 5 5 H 1.08994 * 110.87038 * 215.81196 * 4 2 1 6 6 N 1.46901 * 110.71868 * 339.01407 * 4 2 1 7 7 C 1.46901 * 110.99976 * 199.97732 * 6 4 2 8 8 C 1.50696 * 109.47330 * 180.02562 * 7 6 4 9 9 O 1.21295 * 120.00060 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00003 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00128 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00252 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99722 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00347 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46941 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47483 * 120.00117 * 15 13 11 18 18 H 1.48501 * 109.47182 * 240.00485 * 15 13 11 19 19 C 1.55154 * 102.94303 * 97.37930 * 4 2 1 20 20 C 1.54908 * 101.58289 * 35.49976 * 19 4 2 21 21 N 1.47290 * 109.98499 * 238.92900 * 2 1 3 22 22 C 1.34774 * 125.79121 * 59.43218 * 21 2 1 23 23 O 1.21280 * 120.00501 * 0.02562 * 22 21 2 24 24 C 1.50698 * 119.99753 * 180.02562 * 22 21 2 25 25 H 1.08997 * 110.29479 * 59.29539 * 24 22 21 26 26 C 1.54261 * 110.32479 * 181.42565 * 24 22 21 27 27 C 1.54377 * 105.06396 * 118.89152 * 26 24 22 28 28 N 1.48561 * 104.59486 * 23.85576 * 27 26 24 29 29 C 1.46895 * 110.99992 * 200.96217 * 28 27 26 30 30 C 1.48729 * 104.28504 * 320.57048 * 28 27 26 31 31 H 1.09005 * 109.47358 * 298.98523 * 1 2 3 32 32 H 1.09002 * 109.47151 * 58.98048 * 1 2 3 33 33 H 1.08998 * 109.47688 * 178.98565 * 1 2 3 34 34 H 1.00902 * 111.00204 * 323.92981 * 6 4 2 35 35 H 1.09002 * 109.47118 * 300.00032 * 7 6 4 36 36 H 1.09002 * 109.47383 * 59.99684 * 7 6 4 37 37 H 0.97002 * 120.00225 * 0.02562 * 10 8 7 38 38 H 0.97003 * 119.99787 * 179.97438 * 14 13 11 39 39 H 1.09008 * 111.00345 * 277.42446 * 19 4 2 40 40 H 1.09000 * 111.03743 * 153.59413 * 19 4 2 41 41 H 1.09002 * 110.36632 * 81.83114 * 20 19 4 42 42 H 1.08995 * 110.36781 * 204.04351 * 20 19 4 43 43 H 1.09000 * 110.32397 * 237.78948 * 26 24 22 44 44 H 1.09004 * 110.32255 * 359.97438 * 26 24 22 45 45 H 1.09005 * 110.41261 * 142.63280 * 27 26 24 46 46 H 1.08996 * 110.41181 * 264.95918 * 27 26 24 47 47 H 1.09000 * 109.47773 * 60.12826 * 29 28 27 48 48 H 1.09005 * 109.47046 * 180.12072 * 29 28 27 49 49 H 1.09002 * 109.47018 * 300.12080 * 29 28 27 50 50 H 1.08994 * 110.39297 * 280.63968 * 30 28 27 51 51 H 1.08999 * 110.50785 * 158.14384 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9635 -0.2806 1.6231 6 7 1.0251 -0.8028 2.2901 7 6 1.6242 -1.0677 3.6049 8 6 0.5399 -1.1175 4.6502 9 8 -0.6181 -0.9484 4.3314 10 7 0.8570 -1.3488 5.9396 11 6 -0.1294 -1.3936 6.8907 12 1 -1.1606 -1.2439 6.6067 13 6 0.1974 -1.6327 8.2199 14 7 1.4521 -1.8154 8.5654 15 14 -1.1466 -1.6944 9.5157 16 1 -2.4648 -1.4599 8.8732 17 1 -1.1448 -3.0285 10.1678 18 1 -0.8990 -0.6443 10.5361 19 6 2.3556 -2.1674 0.6945 20 6 2.8617 -1.8473 -0.7342 21 7 2.0334 -0.7144 -1.1856 22 6 1.7803 -0.3885 -2.4686 23 8 1.0820 0.5695 -2.7246 24 6 2.3649 -1.2146 -3.5852 25 1 2.0302 -2.2488 -3.5056 26 6 1.9645 -0.6258 -4.9536 27 6 3.2980 -0.2488 -5.6340 28 7 4.3097 -1.1209 -4.9837 29 6 5.6611 -0.5672 -5.1410 30 6 3.9069 -1.1460 -3.5522 31 1 -0.3634 0.4980 0.8990 32 1 -0.3633 0.5296 -0.8807 33 1 -0.3634 -1.0274 -0.0182 34 1 0.4797 0.0460 2.3056 35 1 2.1481 -2.0232 3.5796 36 1 2.3293 -0.2732 3.8497 37 1 1.7832 -1.4830 6.1948 38 1 1.6802 -1.9819 9.4934 39 1 1.4502 -2.7736 0.6616 40 1 3.1308 -2.6584 1.2828 41 1 3.9134 -1.5619 -0.7090 42 1 2.7182 -2.7068 -1.3889 43 1 1.4347 -1.3716 -5.5463 44 1 1.3446 0.2605 -4.8177 45 1 3.2504 -0.4538 -6.7035 46 1 3.5303 0.8017 -5.4590 47 1 5.7055 0.4197 -4.6804 48 1 6.3824 -1.2263 -4.6577 49 1 5.8986 -0.4842 -6.2016 50 1 4.2363 -0.2370 -3.0490 51 1 4.3159 -2.0259 -3.0557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180124322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:07 Heat of formation + Delta-G solvation = -76.165453 kcal Electronic energy + Delta-G solvation = -29820.200946 eV Core-core repulsion = 25753.540135 eV Total energy + Delta-G solvation = -4066.660811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.71865 -40.28755 -39.65364 -38.51405 -36.21270 -35.58258 -33.49630 -33.23916 -32.21779 -31.73706 -29.84942 -28.20023 -26.83053 -26.55326 -25.43406 -24.46003 -22.48907 -22.23101 -21.09598 -20.74641 -19.94685 -19.87249 -18.47355 -17.79409 -17.37613 -17.01882 -16.85610 -16.67502 -16.36784 -16.10449 -15.73875 -15.50716 -15.27620 -15.02910 -14.68892 -14.51640 -14.41217 -14.15269 -13.92565 -13.78550 -13.48781 -13.36877 -13.31989 -13.15635 -12.89749 -12.70575 -12.59608 -12.53194 -12.40172 -12.31748 -12.24792 -12.15536 -12.11919 -11.85216 -11.72798 -11.63997 -11.50719 -10.86224 -10.33086 -10.00452 -9.74048 -9.55732 -9.35571 -8.46611 -5.94738 1.36547 1.42181 1.53907 1.55878 1.82666 2.06752 2.29555 2.90290 3.00235 3.21109 3.33736 3.50919 3.51368 3.60695 3.66601 3.81311 4.02710 4.14615 4.23763 4.25880 4.30936 4.31752 4.40776 4.44360 4.49513 4.51917 4.53382 4.59696 4.62442 4.65479 4.69269 4.75899 4.83649 4.95095 5.00046 5.02023 5.04671 5.09941 5.11827 5.26000 5.30218 5.39111 5.42037 5.74282 5.89690 5.95642 6.11016 6.32288 6.49720 6.61122 7.08911 7.13789 7.57697 8.13339 8.70893 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033349 B = 0.001868 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.409023 B =14985.162926 C =15541.022000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.137 3.863 3 H 0.068 0.932 4 C 0.080 3.920 5 H 0.078 0.922 6 N -0.669 5.669 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.120 4.120 20 C 0.098 3.902 21 N -0.608 5.608 22 C 0.530 3.470 23 O -0.579 6.579 24 C -0.105 4.105 25 H 0.124 0.876 26 C -0.118 4.118 27 C 0.033 3.967 28 N -0.520 5.520 29 C 0.011 3.989 30 C 0.049 3.951 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.345 0.655 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.037 0.963 47 H 0.024 0.976 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.045 -1.004 -25.175 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.086 0.914 4 C -0.031 4.031 5 H 0.096 0.904 6 N -0.304 5.304 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.158 4.158 20 C -0.023 4.023 21 N -0.341 5.341 22 C 0.320 3.680 23 O -0.459 6.459 24 C -0.126 4.126 25 H 0.142 0.858 26 C -0.156 4.156 27 C -0.095 4.095 28 N -0.244 5.244 29 C -0.137 4.137 30 C -0.079 4.079 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.043 0.957 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.057 0.943 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.871 -1.587 -25.762 28.410 hybrid contribution -0.091 1.846 1.672 2.492 sum 11.780 0.259 -24.090 26.818 Atomic orbital electron populations 1.21841 0.95084 1.02081 1.01180 1.21546 0.94619 0.95541 0.84948 0.91409 1.22627 0.93428 0.97324 0.89674 0.90432 1.60378 1.23466 1.43816 1.02705 1.21583 0.93783 1.03595 0.87669 1.20924 0.90617 0.82178 0.83783 1.90505 1.22856 1.56267 1.81473 1.41923 1.09979 1.63191 1.05949 1.19679 0.90440 1.47896 0.88198 0.90486 1.26002 0.99424 0.96306 0.99497 1.69669 1.17812 1.48749 1.19777 0.84896 0.77726 0.78321 0.77551 1.19985 1.19592 1.19640 1.22885 1.02544 0.95560 0.94822 1.22661 0.95312 0.88785 0.95575 1.48623 1.50252 1.31045 1.04212 1.20668 0.79821 0.84608 0.82893 1.90658 1.40697 1.31099 1.83487 1.22037 0.96851 1.01000 0.92733 0.85812 1.22328 0.97690 1.02001 0.93625 1.23156 0.91110 0.94824 1.00385 1.65480 1.02860 1.46761 1.09313 1.22576 0.90040 0.98034 1.03067 1.23154 0.91804 1.02330 0.90638 0.91836 0.93363 0.92711 0.83319 0.87177 0.91347 0.76883 0.91319 0.90999 0.87743 0.88726 0.88103 0.89247 0.91055 0.88598 0.94510 0.95691 0.89931 0.90320 0.94291 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.41 71.98 0.61 -3.36 16 2 C 0.14 3.14 3.42 45.29 0.15 3.29 16 3 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.08 1.65 3.12 46.10 0.14 1.79 16 5 H 0.08 1.37 7.89 -2.39 -0.02 1.35 16 6 N -0.67 -19.49 5.21 -489.46 -2.55 -22.04 16 7 C 0.07 2.07 6.02 85.56 0.52 2.58 16 8 C 0.44 20.17 7.82 87.66 0.69 20.85 16 9 O -0.62 -34.17 15.78 -3.08 -0.05 -34.22 16 10 N -0.57 -28.71 5.29 -306.98 -1.62 -30.33 16 11 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 12 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 14 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 15 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 19 C -0.12 -1.93 6.71 31.98 0.21 -1.71 16 20 C 0.10 1.19 5.49 86.85 0.48 1.66 16 21 N -0.61 -11.77 3.09 -787.43 -2.43 -14.21 16 22 C 0.53 11.78 6.87 87.66 0.60 12.38 16 23 O -0.58 -17.79 14.19 -3.03 -0.04 -17.83 16 24 C -0.10 -1.60 2.73 -10.64 -0.03 -1.62 16 25 H 0.12 1.48 7.84 -2.39 -0.02 1.46 16 26 C -0.12 -1.91 6.59 31.49 0.21 -1.70 16 27 C 0.03 0.46 6.49 86.45 0.56 1.02 16 28 N -0.52 -6.79 5.66 -907.16 -5.13 -11.93 16 29 C 0.01 0.11 9.53 127.69 1.22 1.33 16 30 C 0.05 0.60 5.06 86.42 0.44 1.04 16 31 H 0.06 1.83 6.23 -2.38 -0.01 1.82 16 32 H 0.05 1.46 6.79 -2.39 -0.02 1.45 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.34 11.10 6.13 -89.69 -0.55 10.55 16 35 H 0.11 2.99 8.13 -2.39 -0.02 2.97 16 36 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 37 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 38 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 42 H 0.10 0.84 7.47 -2.39 -0.02 0.82 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.53 6.46 -2.39 -0.02 1.51 16 45 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.04 0.57 7.98 -2.39 -0.02 0.55 16 47 H 0.02 0.27 7.98 -2.39 -0.02 0.26 16 48 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.04 0.56 7.62 -2.39 -0.02 0.54 16 51 H 0.11 0.90 7.76 -2.39 -0.02 0.88 16 Total: -1.00 -72.60 399.57 -2.79 -75.39 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.34 Total: 39.51 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.07 Total: 19.46 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -11.46 Total: -127.06 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.09 Total: -52.05 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.60 -2.79 -75.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180124322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.771 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds