Wall clock time and date at job start Tue Mar 31 2020 21:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.87720 * 2 1 4 4 C 1.54317 * 109.88427 * 121.01568 * 2 1 3 5 5 H 1.08998 * 110.72899 * 215.76424 * 4 2 1 6 6 N 1.46908 * 110.71998 * 338.86478 * 4 2 1 7 7 C 1.46894 * 110.99882 * 198.18823 * 6 4 2 8 8 C 1.50706 * 109.47178 * 179.97438 * 7 6 4 9 9 O 1.21287 * 119.99380 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99904 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99492 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00139 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99982 * 180.27922 * 11 10 8 14 14 N 1.31418 * 119.99759 * 359.72676 * 13 11 10 15 15 Si 1.86799 * 120.00441 * 179.72703 * 13 11 10 16 16 H 1.48502 * 109.46718 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47556 * 119.99681 * 15 13 11 18 18 H 1.48505 * 109.47359 * 240.00383 * 15 13 11 19 19 C 1.55164 * 103.10055 * 97.31156 * 4 2 1 20 20 C 1.55117 * 101.48312 * 35.28934 * 19 4 2 21 21 N 1.47018 * 109.88665 * 238.82727 * 2 1 3 22 22 C 1.34781 * 125.64832 * 59.47921 * 21 2 1 23 23 O 1.21275 * 120.00206 * 0.02562 * 22 21 2 24 24 C 1.50698 * 119.99970 * 180.02562 * 22 21 2 25 25 N 1.46903 * 109.47095 * 180.02562 * 24 22 21 26 26 C 1.48528 * 111.00106 * 52.60532 * 25 24 22 27 27 C 1.54936 * 103.22853 * 159.72298 * 26 25 24 28 28 C 1.54597 * 102.91975 * 322.58333 * 27 26 25 29 29 C 1.47902 * 110.99911 * 170.00447 * 25 24 22 30 30 H 1.08999 * 109.46843 * 305.25492 * 1 2 3 31 31 H 1.09001 * 109.46986 * 65.25330 * 1 2 3 32 32 H 1.08994 * 109.46826 * 185.25088 * 1 2 3 33 33 H 1.00901 * 110.99546 * 322.14036 * 6 4 2 34 34 H 1.09001 * 109.47369 * 59.99721 * 7 6 4 35 35 H 1.08998 * 109.47840 * 300.00026 * 7 6 4 36 36 H 0.96996 * 120.00853 * 0.02562 * 10 8 7 37 37 H 0.97006 * 119.99642 * 179.97438 * 14 13 11 38 38 H 1.09007 * 110.99788 * 153.48927 * 19 4 2 39 39 H 1.08992 * 111.00271 * 277.33811 * 19 4 2 40 40 H 1.09008 * 110.41779 * 204.29291 * 20 19 4 41 41 H 1.08998 * 110.30488 * 82.08991 * 20 19 4 42 42 H 1.09000 * 109.47546 * 300.00884 * 24 22 21 43 43 H 1.09007 * 109.46911 * 60.00765 * 24 22 21 44 44 H 1.09001 * 110.66586 * 278.15676 * 26 25 24 45 45 H 1.09004 * 110.66828 * 41.28775 * 26 25 24 46 46 H 1.09000 * 110.72286 * 204.22859 * 27 26 25 47 47 H 1.08995 * 110.88025 * 81.01379 * 27 26 25 48 48 H 1.08997 * 110.31339 * 263.04328 * 28 27 26 49 49 H 1.09007 * 110.30813 * 140.87158 * 28 27 26 50 50 H 1.08996 * 109.91713 * 333.50447 * 29 25 24 51 51 H 1.09001 * 109.91739 * 94.80529 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 1.2437 5 1 2.9639 -0.2791 1.6205 6 7 1.0264 -0.7996 2.2915 7 6 1.6218 -1.1065 3.5988 8 6 0.5390 -1.1506 4.6461 9 8 -0.6151 -0.9469 4.3338 10 7 0.8531 -1.4174 5.9292 11 6 -0.1321 -1.4581 6.8818 12 1 -1.1598 -1.2767 6.6039 13 6 0.1924 -1.7274 8.2058 14 7 1.4429 -1.9485 8.5439 15 14 -1.1489 -1.7753 9.5051 16 1 -2.4622 -1.4946 8.8712 17 1 -1.1800 -3.1195 10.1352 18 1 -0.8708 -0.7489 10.5417 19 6 2.3553 -2.1691 0.6987 20 6 2.8569 -1.8508 -0.7342 21 7 2.0301 -0.7156 -1.1829 22 6 1.7742 -0.3886 -2.4652 23 8 1.0769 0.5706 -2.7188 24 6 2.3547 -1.2150 -3.5837 25 7 1.9322 -0.6567 -4.8752 26 6 2.2424 0.7936 -4.9551 27 6 2.2363 1.0740 -6.4789 28 6 2.8713 -0.2063 -7.0684 29 6 2.6679 -1.2885 -5.9919 30 1 -0.3633 0.5932 0.8392 31 1 -0.3633 0.4302 -0.9333 32 1 -0.3633 -1.0233 0.0940 33 1 0.5020 0.0617 2.3262 34 1 2.3465 -0.3347 3.8582 35 1 2.1223 -2.0737 3.5522 36 1 1.7761 -1.5807 6.1788 37 1 1.6695 -2.1362 9.4683 38 1 3.1317 -2.6573 1.2879 39 1 1.4502 -2.7755 0.6689 40 1 2.7088 -2.7099 -1.3886 41 1 3.9094 -1.5683 -0.7125 42 1 3.4428 -1.1996 -3.5200 43 1 2.0003 -2.2423 -3.4982 44 1 1.4727 1.3799 -4.4530 45 1 3.2243 1.0011 -4.5296 46 1 2.8437 1.9485 -6.7125 47 1 1.2183 1.2039 -6.8459 48 1 3.9343 -0.0512 -7.2528 49 1 2.3640 -0.4901 -7.9906 50 1 3.6347 -1.6505 -5.6420 51 1 2.0851 -2.1140 -6.4006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180135807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:15 Heat of formation + Delta-G solvation = -71.281653 kcal Electronic energy + Delta-G solvation = -29531.789619 eV Core-core repulsion = 25465.340586 eV Total energy + Delta-G solvation = -4066.449033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.54944 -40.27450 -39.72338 -38.43373 -36.19358 -35.56069 -33.50275 -33.23802 -32.18607 -31.62604 -29.72741 -28.39032 -27.41218 -26.52486 -25.29911 -23.93434 -22.35918 -21.71635 -21.13565 -20.88773 -20.04307 -19.88991 -18.27350 -17.77530 -17.37831 -17.00980 -16.92005 -16.65242 -16.39945 -16.31577 -15.84536 -15.60142 -15.35500 -14.92342 -14.65356 -14.46560 -14.26022 -14.12726 -13.96333 -13.50157 -13.46997 -13.38855 -13.23426 -13.12605 -13.04248 -12.89323 -12.67302 -12.51486 -12.40651 -12.34848 -12.20893 -12.11904 -11.87620 -11.83963 -11.62742 -11.50584 -11.45309 -10.59654 -10.32652 -10.00236 -9.70336 -9.38377 -9.34556 -8.46442 -5.94639 1.36691 1.42316 1.56024 1.59672 1.80942 2.06962 2.29762 2.91821 3.04661 3.21224 3.28417 3.51854 3.66497 3.69424 3.76037 3.95334 4.04487 4.08822 4.25346 4.27914 4.30001 4.31358 4.33625 4.39615 4.45467 4.52944 4.60896 4.63553 4.65695 4.69542 4.73735 4.78220 4.94387 4.99746 5.02447 5.05238 5.12375 5.21513 5.26871 5.30233 5.34483 5.41912 5.42482 5.88000 5.90011 5.97043 6.11405 6.32766 6.53908 6.61347 7.13954 7.17883 7.57832 8.13572 8.71024 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.001733 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.382375 B =16150.291491 C =16485.869370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.141 3.859 3 H 0.068 0.932 4 C 0.079 3.921 5 H 0.077 0.923 6 N -0.669 5.669 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.624 6.624 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.120 4.120 20 C 0.099 3.901 21 N -0.612 5.612 22 C 0.522 3.478 23 O -0.564 6.564 24 C 0.039 3.961 25 N -0.526 5.526 26 C 0.034 3.966 27 C -0.125 4.125 28 C -0.127 4.127 29 C 0.033 3.967 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.060 0.940 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 -0.576 -26.913 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.037 3.963 3 H 0.086 0.914 4 C -0.031 4.031 5 H 0.094 0.906 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.158 4.158 20 C -0.023 4.023 21 N -0.347 5.347 22 C 0.311 3.689 23 O -0.442 6.442 24 C -0.092 4.092 25 N -0.251 5.251 26 C -0.094 4.094 27 C -0.164 4.164 28 C -0.165 4.165 29 C -0.094 4.094 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.987 -0.711 -27.316 29.452 hybrid contribution 0.734 0.995 1.566 1.996 sum 11.722 0.284 -25.750 28.294 Atomic orbital electron populations 1.21820 0.95209 1.02104 1.01003 1.21455 0.94525 0.95484 0.84851 0.91394 1.22633 0.93367 0.97332 0.89748 0.90561 1.60322 1.24809 1.42031 1.03140 1.21573 0.93746 1.03538 0.87719 1.20924 0.90582 0.82201 0.83804 1.90505 1.23114 1.55997 1.81477 1.41916 1.10288 1.62473 1.06351 1.19685 0.90752 1.47336 0.88533 0.90502 1.25992 0.99402 0.96248 0.99487 1.69672 1.18049 1.48135 1.20126 0.84899 0.77727 0.78324 0.77551 1.20012 1.19574 1.19639 1.22913 1.02495 0.95517 0.94893 1.22644 0.95333 0.88698 0.95582 1.48593 1.50742 1.31121 1.04245 1.20715 0.80441 0.84909 0.82798 1.90638 1.39790 1.30665 1.83134 1.22231 0.99861 0.99565 0.87561 1.64637 1.54701 1.04129 1.01678 1.23357 0.99395 0.89407 0.97226 1.22514 1.01474 0.98467 0.93904 1.22412 1.01630 0.94014 0.98478 1.23010 0.97206 0.97998 0.91170 0.92163 0.93336 0.92747 0.83414 0.91361 0.87200 0.76885 0.91323 0.87757 0.91092 0.88164 0.88719 0.89513 0.86096 0.90257 0.94579 0.90119 0.91622 0.90195 0.90139 0.92138 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.31 71.98 0.60 -3.46 16 2 C 0.14 3.26 3.41 45.34 0.15 3.42 16 3 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 4 C 0.08 1.67 3.09 46.10 0.14 1.81 16 5 H 0.08 1.37 7.93 -2.39 -0.02 1.35 16 6 N -0.67 -19.74 5.15 -489.44 -2.52 -22.26 16 7 C 0.07 2.10 6.02 85.56 0.52 2.62 16 8 C 0.44 20.28 7.82 87.66 0.69 20.97 16 9 O -0.62 -34.38 15.78 -3.05 -0.05 -34.43 16 10 N -0.57 -28.81 5.29 -306.99 -1.62 -30.44 16 11 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 12 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 13 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 14 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 15 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 C -0.12 -1.96 6.63 32.06 0.21 -1.75 16 20 C 0.10 1.20 6.69 86.93 0.58 1.78 16 21 N -0.61 -12.00 3.08 -787.65 -2.43 -14.42 16 22 C 0.52 11.73 7.34 87.66 0.64 12.38 16 23 O -0.56 -17.29 12.34 -3.01 -0.04 -17.33 16 24 C 0.04 0.59 4.52 85.56 0.39 0.98 16 25 N -0.53 -9.62 5.26 -887.56 -4.67 -14.29 16 26 C 0.03 0.66 5.30 86.65 0.46 1.12 16 27 C -0.13 -1.83 7.06 31.80 0.22 -1.61 16 28 C -0.13 -1.35 6.93 31.48 0.22 -1.13 16 29 C 0.03 0.40 6.70 86.45 0.58 0.98 16 30 H 0.06 1.76 6.61 -2.39 -0.02 1.75 16 31 H 0.05 1.52 6.58 -2.39 -0.02 1.51 16 32 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16 33 H 0.34 11.24 6.38 -89.69 -0.57 10.67 16 34 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 35 H 0.11 3.01 8.06 -2.39 -0.02 2.99 16 36 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 37 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 0.80 7.48 -2.38 -0.02 0.78 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.91 7.81 -2.39 -0.02 0.89 16 43 H 0.12 1.44 7.85 -2.38 -0.02 1.42 16 44 H 0.08 2.11 5.97 -2.39 -0.01 2.09 16 45 H 0.04 0.68 8.02 -2.38 -0.02 0.66 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.06 0.53 7.57 -2.39 -0.02 0.51 16 51 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.55 398.92 -2.70 -76.24 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -0.36 Total: 40.74 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.68 Total: 19.94 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -10.95 Total: -130.00 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.76 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.55 -2.70 -76.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180135807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.961 kcal (2) G-P(sol) polarization free energy of solvation -73.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds