Wall clock time and date at job start Tue Mar 31 2020 21:50:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.87720 * 2 1
4 4 C 1.54317 * 109.88427 * 121.01568 * 2 1 3
5 5 H 1.08998 * 110.72899 * 215.76424 * 4 2 1
6 6 N 1.46908 * 110.71998 * 338.86478 * 4 2 1
7 7 C 1.46894 * 110.99882 * 198.18823 * 6 4 2
8 8 C 1.50706 * 109.47178 * 179.97438 * 7 6 4
9 9 O 1.21287 * 119.99380 * 0.02562 * 8 7 6
10 10 N 1.34771 * 119.99904 * 179.97438 * 8 7 6
11 11 C 1.37101 * 119.99492 * 180.02562 * 10 8 7
12 12 H 1.07996 * 120.00139 * 0.02562 * 11 10 8
13 13 C 1.38950 * 119.99982 * 180.27922 * 11 10 8
14 14 N 1.31418 * 119.99759 * 359.72676 * 13 11 10
15 15 Si 1.86799 * 120.00441 * 179.72703 * 13 11 10
16 16 H 1.48502 * 109.46718 * 359.97438 * 15 13 11
17 17 H 1.48493 * 109.47556 * 119.99681 * 15 13 11
18 18 H 1.48505 * 109.47359 * 240.00383 * 15 13 11
19 19 C 1.55164 * 103.10055 * 97.31156 * 4 2 1
20 20 C 1.55117 * 101.48312 * 35.28934 * 19 4 2
21 21 N 1.47018 * 109.88665 * 238.82727 * 2 1 3
22 22 C 1.34781 * 125.64832 * 59.47921 * 21 2 1
23 23 O 1.21275 * 120.00206 * 0.02562 * 22 21 2
24 24 C 1.50698 * 119.99970 * 180.02562 * 22 21 2
25 25 N 1.46903 * 109.47095 * 180.02562 * 24 22 21
26 26 C 1.48528 * 111.00106 * 52.60532 * 25 24 22
27 27 C 1.54936 * 103.22853 * 159.72298 * 26 25 24
28 28 C 1.54597 * 102.91975 * 322.58333 * 27 26 25
29 29 C 1.47902 * 110.99911 * 170.00447 * 25 24 22
30 30 H 1.08999 * 109.46843 * 305.25492 * 1 2 3
31 31 H 1.09001 * 109.46986 * 65.25330 * 1 2 3
32 32 H 1.08994 * 109.46826 * 185.25088 * 1 2 3
33 33 H 1.00901 * 110.99546 * 322.14036 * 6 4 2
34 34 H 1.09001 * 109.47369 * 59.99721 * 7 6 4
35 35 H 1.08998 * 109.47840 * 300.00026 * 7 6 4
36 36 H 0.96996 * 120.00853 * 0.02562 * 10 8 7
37 37 H 0.97006 * 119.99642 * 179.97438 * 14 13 11
38 38 H 1.09007 * 110.99788 * 153.48927 * 19 4 2
39 39 H 1.08992 * 111.00271 * 277.33811 * 19 4 2
40 40 H 1.09008 * 110.41779 * 204.29291 * 20 19 4
41 41 H 1.08998 * 110.30488 * 82.08991 * 20 19 4
42 42 H 1.09000 * 109.47546 * 300.00884 * 24 22 21
43 43 H 1.09007 * 109.46911 * 60.00765 * 24 22 21
44 44 H 1.09001 * 110.66586 * 278.15676 * 26 25 24
45 45 H 1.09004 * 110.66828 * 41.28775 * 26 25 24
46 46 H 1.09000 * 110.72286 * 204.22859 * 27 26 25
47 47 H 1.08995 * 110.88025 * 81.01379 * 27 26 25
48 48 H 1.08997 * 110.31339 * 263.04328 * 28 27 26
49 49 H 1.09007 * 110.30813 * 140.87158 * 28 27 26
50 50 H 1.08996 * 109.91713 * 333.50447 * 29 25 24
51 51 H 1.09001 * 109.91739 * 94.80529 * 29 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9006 1.0251 0.0000
4 6 2.0548 -0.7477 1.2437
5 1 2.9639 -0.2791 1.6205
6 7 1.0264 -0.7996 2.2915
7 6 1.6218 -1.1065 3.5988
8 6 0.5390 -1.1506 4.6461
9 8 -0.6151 -0.9469 4.3338
10 7 0.8531 -1.4174 5.9292
11 6 -0.1321 -1.4581 6.8818
12 1 -1.1598 -1.2767 6.6039
13 6 0.1924 -1.7274 8.2058
14 7 1.4429 -1.9485 8.5439
15 14 -1.1489 -1.7753 9.5051
16 1 -2.4622 -1.4946 8.8712
17 1 -1.1800 -3.1195 10.1352
18 1 -0.8708 -0.7489 10.5417
19 6 2.3553 -2.1691 0.6987
20 6 2.8569 -1.8508 -0.7342
21 7 2.0301 -0.7156 -1.1829
22 6 1.7742 -0.3886 -2.4652
23 8 1.0769 0.5706 -2.7188
24 6 2.3547 -1.2150 -3.5837
25 7 1.9322 -0.6567 -4.8752
26 6 2.2424 0.7936 -4.9551
27 6 2.2363 1.0740 -6.4789
28 6 2.8713 -0.2063 -7.0684
29 6 2.6679 -1.2885 -5.9919
30 1 -0.3633 0.5932 0.8392
31 1 -0.3633 0.4302 -0.9333
32 1 -0.3633 -1.0233 0.0940
33 1 0.5020 0.0617 2.3262
34 1 2.3465 -0.3347 3.8582
35 1 2.1223 -2.0737 3.5522
36 1 1.7761 -1.5807 6.1788
37 1 1.6695 -2.1362 9.4683
38 1 3.1317 -2.6573 1.2879
39 1 1.4502 -2.7755 0.6689
40 1 2.7088 -2.7099 -1.3886
41 1 3.9094 -1.5683 -0.7125
42 1 3.4428 -1.1996 -3.5200
43 1 2.0003 -2.2423 -3.4982
44 1 1.4727 1.3799 -4.4530
45 1 3.2243 1.0011 -4.5296
46 1 2.8437 1.9485 -6.7125
47 1 1.2183 1.2039 -6.8459
48 1 3.9343 -0.0512 -7.2528
49 1 2.3640 -0.4901 -7.9906
50 1 3.6347 -1.6505 -5.6420
51 1 2.0851 -2.1140 -6.4006
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001180135807.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:50:15
Heat of formation + Delta-G solvation = -71.281653 kcal
Electronic energy + Delta-G solvation = -29531.789619 eV
Core-core repulsion = 25465.340586 eV
Total energy + Delta-G solvation = -4066.449033 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.54944 -40.27450 -39.72338 -38.43373 -36.19358 -35.56069 -33.50275 -33.23802
-32.18607 -31.62604 -29.72741 -28.39032 -27.41218 -26.52486 -25.29911 -23.93434
-22.35918 -21.71635 -21.13565 -20.88773 -20.04307 -19.88991 -18.27350 -17.77530
-17.37831 -17.00980 -16.92005 -16.65242 -16.39945 -16.31577 -15.84536 -15.60142
-15.35500 -14.92342 -14.65356 -14.46560 -14.26022 -14.12726 -13.96333 -13.50157
-13.46997 -13.38855 -13.23426 -13.12605 -13.04248 -12.89323 -12.67302 -12.51486
-12.40651 -12.34848 -12.20893 -12.11904 -11.87620 -11.83963 -11.62742 -11.50584
-11.45309 -10.59654 -10.32652 -10.00236 -9.70336 -9.38377 -9.34556 -8.46442
-5.94639 1.36691 1.42316 1.56024 1.59672 1.80942 2.06962 2.29762
2.91821 3.04661 3.21224 3.28417 3.51854 3.66497 3.69424 3.76037
3.95334 4.04487 4.08822 4.25346 4.27914 4.30001 4.31358 4.33625
4.39615 4.45467 4.52944 4.60896 4.63553 4.65695 4.69542 4.73735
4.78220 4.94387 4.99746 5.02447 5.05238 5.12375 5.21513 5.26871
5.30233 5.34483 5.41912 5.42482 5.88000 5.90011 5.97043 6.11405
6.32766 6.53908 6.61347 7.13954 7.17883 7.57832 8.13572 8.71024
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.042198 B = 0.001733 C = 0.001698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 663.382375 B =16150.291491 C =16485.869370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.141 3.859
3 H 0.068 0.932
4 C 0.079 3.921
5 H 0.077 0.923
6 N -0.669 5.669
7 C 0.066 3.934
8 C 0.437 3.563
9 O -0.624 6.624
10 N -0.573 5.573
11 C -0.333 4.333
12 H 0.077 0.923
13 C -0.011 4.011
14 N -0.919 5.919
15 Si 0.991 3.009
16 H -0.275 1.275
17 H -0.271 1.271
18 H -0.271 1.271
19 C -0.120 4.120
20 C 0.099 3.901
21 N -0.612 5.612
22 C 0.522 3.478
23 O -0.564 6.564
24 C 0.039 3.961
25 N -0.526 5.526
26 C 0.034 3.966
27 C -0.125 4.125
28 C -0.127 4.127
29 C 0.033 3.967
30 H 0.060 0.940
31 H 0.048 0.952
32 H 0.053 0.947
33 H 0.345 0.655
34 H 0.069 0.931
35 H 0.110 0.890
36 H 0.397 0.603
37 H 0.277 0.723
38 H 0.104 0.896
39 H 0.070 0.930
40 H 0.100 0.900
41 H 0.095 0.905
42 H 0.087 0.913
43 H 0.121 0.879
44 H 0.079 0.921
45 H 0.036 0.964
46 H 0.080 0.920
47 H 0.065 0.935
48 H 0.079 0.921
49 H 0.080 0.920
50 H 0.060 0.940
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.768 -0.576 -26.913 29.794
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.037 3.963
3 H 0.086 0.914
4 C -0.031 4.031
5 H 0.094 0.906
6 N -0.303 5.303
7 C -0.066 4.066
8 C 0.225 3.775
9 O -0.511 6.511
10 N -0.210 5.210
11 C -0.463 4.463
12 H 0.095 0.905
13 C -0.211 4.211
14 N -0.560 5.560
15 Si 0.815 3.185
16 H -0.200 1.200
17 H -0.196 1.196
18 H -0.196 1.196
19 C -0.158 4.158
20 C -0.023 4.023
21 N -0.347 5.347
22 C 0.311 3.689
23 O -0.442 6.442
24 C -0.092 4.092
25 N -0.251 5.251
26 C -0.094 4.094
27 C -0.164 4.164
28 C -0.165 4.165
29 C -0.094 4.094
30 H 0.078 0.922
31 H 0.067 0.933
32 H 0.073 0.927
33 H 0.166 0.834
34 H 0.086 0.914
35 H 0.128 0.872
36 H 0.231 0.769
37 H 0.087 0.913
38 H 0.122 0.878
39 H 0.089 0.911
40 H 0.118 0.882
41 H 0.113 0.887
42 H 0.105 0.895
43 H 0.139 0.861
44 H 0.097 0.903
45 H 0.054 0.946
46 H 0.099 0.901
47 H 0.084 0.916
48 H 0.098 0.902
49 H 0.099 0.901
50 H 0.079 0.921
51 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 10.987 -0.711 -27.316 29.452
hybrid contribution 0.734 0.995 1.566 1.996
sum 11.722 0.284 -25.750 28.294
Atomic orbital electron populations
1.21820 0.95209 1.02104 1.01003 1.21455 0.94525 0.95484 0.84851
0.91394 1.22633 0.93367 0.97332 0.89748 0.90561 1.60322 1.24809
1.42031 1.03140 1.21573 0.93746 1.03538 0.87719 1.20924 0.90582
0.82201 0.83804 1.90505 1.23114 1.55997 1.81477 1.41916 1.10288
1.62473 1.06351 1.19685 0.90752 1.47336 0.88533 0.90502 1.25992
0.99402 0.96248 0.99487 1.69672 1.18049 1.48135 1.20126 0.84899
0.77727 0.78324 0.77551 1.20012 1.19574 1.19639 1.22913 1.02495
0.95517 0.94893 1.22644 0.95333 0.88698 0.95582 1.48593 1.50742
1.31121 1.04245 1.20715 0.80441 0.84909 0.82798 1.90638 1.39790
1.30665 1.83134 1.22231 0.99861 0.99565 0.87561 1.64637 1.54701
1.04129 1.01678 1.23357 0.99395 0.89407 0.97226 1.22514 1.01474
0.98467 0.93904 1.22412 1.01630 0.94014 0.98478 1.23010 0.97206
0.97998 0.91170 0.92163 0.93336 0.92747 0.83414 0.91361 0.87200
0.76885 0.91323 0.87757 0.91092 0.88164 0.88719 0.89513 0.86096
0.90257 0.94579 0.90119 0.91622 0.90195 0.90139 0.92138 0.89647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.06 8.31 71.98 0.60 -3.46 16
2 C 0.14 3.26 3.41 45.34 0.15 3.42 16
3 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16
4 C 0.08 1.67 3.09 46.10 0.14 1.81 16
5 H 0.08 1.37 7.93 -2.39 -0.02 1.35 16
6 N -0.67 -19.74 5.15 -489.44 -2.52 -22.26 16
7 C 0.07 2.10 6.02 85.56 0.52 2.62 16
8 C 0.44 20.28 7.82 87.66 0.69 20.97 16
9 O -0.62 -34.38 15.78 -3.05 -0.05 -34.43 16
10 N -0.57 -28.81 5.29 -306.99 -1.62 -30.44 16
11 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16
12 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16
13 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16
14 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16
15 Si 0.99 42.82 29.55 68.60 2.03 44.85 16
16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
17 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16
18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
19 C -0.12 -1.96 6.63 32.06 0.21 -1.75 16
20 C 0.10 1.20 6.69 86.93 0.58 1.78 16
21 N -0.61 -12.00 3.08 -787.65 -2.43 -14.42 16
22 C 0.52 11.73 7.34 87.66 0.64 12.38 16
23 O -0.56 -17.29 12.34 -3.01 -0.04 -17.33 16
24 C 0.04 0.59 4.52 85.56 0.39 0.98 16
25 N -0.53 -9.62 5.26 -887.56 -4.67 -14.29 16
26 C 0.03 0.66 5.30 86.65 0.46 1.12 16
27 C -0.13 -1.83 7.06 31.80 0.22 -1.61 16
28 C -0.13 -1.35 6.93 31.48 0.22 -1.13 16
29 C 0.03 0.40 6.70 86.45 0.58 0.98 16
30 H 0.06 1.76 6.61 -2.39 -0.02 1.75 16
31 H 0.05 1.52 6.58 -2.39 -0.02 1.51 16
32 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16
33 H 0.34 11.24 6.38 -89.69 -0.57 10.67 16
34 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16
35 H 0.11 3.01 8.06 -2.39 -0.02 2.99 16
36 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16
37 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16
38 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16
39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
40 H 0.10 0.80 7.48 -2.38 -0.02 0.78 16
41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
42 H 0.09 0.91 7.81 -2.39 -0.02 0.89 16
43 H 0.12 1.44 7.85 -2.38 -0.02 1.42 16
44 H 0.08 2.11 5.97 -2.39 -0.01 2.09 16
45 H 0.04 0.68 8.02 -2.38 -0.02 0.66 16
46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
49 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16
50 H 0.06 0.53 7.57 -2.39 -0.02 0.51 16
51 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
Total: -1.00 -73.55 398.92 -2.70 -76.24
By element:
Atomic # 1 Polarization: 41.10 SS G_CDS: -0.36 Total: 40.74 kcal
Atomic # 6 Polarization: 13.25 SS G_CDS: 6.68 Total: 19.94 kcal
Atomic # 7 Polarization: -119.05 SS G_CDS: -10.95 Total: -130.00 kcal
Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.76 kcal
Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal
Total: -73.55 -2.70 -76.24 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001180135807.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.961 kcal
(2) G-P(sol) polarization free energy of solvation -73.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.586 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds