Wall clock time and date at job start Tue Mar 31 2020 21:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.90436 * 2 1 4 4 C 1.53998 * 109.91795 * 238.89886 * 2 1 3 5 5 H 1.08997 * 110.30727 * 120.20941 * 4 2 1 6 6 C 1.50702 * 110.30785 * 358.13887 * 4 2 1 7 7 O 1.21279 * 119.99896 * 274.38208 * 6 4 2 8 8 N 1.34774 * 120.00001 * 94.38414 * 6 4 2 9 9 C 1.47024 * 125.64671 * 359.95597 * 8 6 4 10 10 C 1.54328 * 107.27026 * 181.09407 * 9 8 6 11 11 C 1.55165 * 102.94131 * 22.19479 * 10 9 8 12 12 H 1.09002 * 111.03574 * 82.58517 * 11 10 9 13 13 N 1.46894 * 111.00420 * 206.42189 * 11 10 9 14 14 C 1.46901 * 111.00204 * 267.19855 * 13 11 10 15 15 C 1.50693 * 109.47349 * 180.02562 * 14 13 11 16 16 O 1.21294 * 120.00075 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00269 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00106 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00475 * 0.02562 * 18 17 15 20 20 C 1.38959 * 119.99984 * 180.02562 * 18 17 15 21 21 N 1.31404 * 119.99704 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00077 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47268 * 119.99836 * 22 20 18 25 25 H 1.48502 * 109.47075 * 240.00036 * 22 20 18 26 26 C 1.47421 * 125.64976 * 180.02562 * 8 6 4 27 27 C 1.54599 * 105.22239 * 239.17500 * 4 2 1 28 28 C 1.55100 * 102.84536 * 338.14837 * 27 4 2 29 29 N 1.47902 * 110.08357 * 121.20928 * 2 1 3 30 30 C 1.46902 * 110.99462 * 265.28985 * 29 2 1 31 31 H 1.08997 * 109.47171 * 183.36861 * 1 2 3 32 32 H 1.08998 * 109.47433 * 303.37383 * 1 2 3 33 33 H 1.09001 * 109.46817 * 63.37322 * 1 2 3 34 34 H 1.08999 * 109.88197 * 300.51370 * 9 8 6 35 35 H 1.09004 * 109.88320 * 61.52918 * 9 8 6 36 36 H 1.08994 * 110.72315 * 263.82929 * 10 9 8 37 37 H 1.08994 * 110.72029 * 140.55344 * 10 9 8 38 38 H 1.00896 * 111.00101 * 143.24108 * 13 11 10 39 39 H 1.08995 * 109.47312 * 59.99547 * 14 13 11 40 40 H 1.09005 * 109.46581 * 299.99720 * 14 13 11 41 41 H 0.96998 * 119.99545 * 0.02562 * 17 15 14 42 42 H 0.96998 * 120.00353 * 359.97438 * 21 20 18 43 43 H 1.08998 * 110.37058 * 36.99236 * 26 8 6 44 44 H 1.09008 * 110.45608 * 274.71911 * 26 8 6 45 45 H 1.09000 * 110.72358 * 96.45544 * 27 4 2 46 46 H 1.09003 * 110.72093 * 219.73110 * 27 4 2 47 47 H 1.08997 * 110.59516 * 278.87420 * 28 27 4 48 48 H 1.08997 * 110.82337 * 155.85285 * 28 27 4 49 49 H 1.08999 * 109.47224 * 59.99992 * 30 29 2 50 50 H 1.09001 * 109.46366 * 179.97438 * 30 29 2 51 51 H 1.08993 * 109.47233 * 299.99251 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2397 5 1 2.6671 -0.0847 -1.8505 6 6 0.9047 -1.2898 -2.0492 7 8 0.4222 -2.3672 -1.7713 8 7 0.4126 -0.5771 -3.0818 9 6 0.8999 0.7372 -3.5253 10 6 0.0213 1.1735 -4.7166 11 6 -1.2723 0.3399 -4.5181 12 1 -1.9388 0.8169 -3.7995 13 7 -1.9564 0.1163 -5.7986 14 6 -2.9652 1.1553 -6.0450 15 6 -3.6448 0.8929 -7.3642 16 8 -3.3203 -0.0651 -8.0336 17 7 -4.6131 1.7227 -7.8002 18 6 -5.2310 1.4843 -9.0006 19 1 -4.9421 0.6313 -9.5967 20 6 -6.2290 2.3402 -9.4504 21 7 -6.5802 3.3783 -8.7254 22 14 -7.0714 2.0149 -11.0856 23 1 -6.4976 0.7925 -11.7036 24 1 -8.5267 1.8210 -10.8629 25 1 -6.8591 3.1728 -11.9908 26 6 -0.7044 -0.9857 -3.9528 27 6 2.9116 -1.9074 -0.6818 28 6 3.2733 -1.4140 0.7434 29 7 2.0379 -0.7198 1.1881 30 6 2.3244 0.2132 2.2860 31 1 -0.3633 -1.0259 0.0604 32 1 -0.3634 0.5653 0.8582 33 1 -0.3633 0.4606 -0.9187 34 1 0.8094 1.4592 -2.7138 35 1 1.9412 0.6601 -3.8384 36 1 0.5010 0.9217 -5.6623 37 1 -0.1959 2.2404 -4.6652 38 1 -2.3691 -0.8037 -5.8323 39 1 -2.4818 2.1318 -6.0728 40 1 -3.7060 1.1392 -5.2455 41 1 -4.8724 2.4891 -7.2651 42 1 -6.1431 3.5471 -7.8761 43 1 -1.4658 -1.5081 -3.3736 44 1 -0.3437 -1.6196 -4.7629 45 1 2.3307 -2.8285 -0.6352 46 1 3.8100 -2.0469 -1.2831 47 1 4.1129 -0.7199 0.7073 48 1 3.4991 -2.2551 1.3989 49 1 1.4117 0.7417 2.5612 50 1 2.6959 -0.3424 3.1471 51 1 3.0778 0.9322 1.9646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182677009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:24 Heat of formation + Delta-G solvation = -80.429187 kcal Electronic energy + Delta-G solvation = -29677.864751 eV Core-core repulsion = 25611.019051 eV Total energy + Delta-G solvation = -4066.845700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -41.79957 -40.42053 -39.72255 -38.47292 -36.54829 -35.70758 -33.49725 -33.13542 -32.48389 -31.57438 -30.13230 -28.05668 -27.13124 -25.89441 -25.61739 -24.54129 -22.52041 -21.84103 -21.65674 -21.48129 -19.98139 -19.62014 -18.42447 -18.10567 -17.74931 -17.02791 -16.80455 -16.73427 -16.45501 -15.89721 -15.79989 -15.50376 -15.45480 -15.32167 -14.74829 -14.54205 -14.25699 -14.18438 -13.94107 -13.78878 -13.54363 -13.35457 -13.29742 -13.17800 -13.13761 -12.76837 -12.74019 -12.56391 -12.28984 -12.23679 -12.15387 -11.96379 -11.94215 -11.88448 -11.76640 -11.70617 -11.52743 -10.88675 -10.42385 -10.10723 -9.73255 -9.49113 -9.41472 -8.92874 -6.06892 1.52333 1.52606 1.54441 1.79554 1.82444 2.00835 2.40170 2.79839 2.95396 3.16291 3.20277 3.38347 3.49304 3.52319 3.66305 3.80792 4.03575 4.09655 4.10383 4.18909 4.25410 4.28258 4.29702 4.36488 4.40632 4.45846 4.48030 4.48428 4.61306 4.67392 4.70407 4.75337 4.77893 4.80945 4.92764 4.94062 5.02027 5.05361 5.12727 5.20108 5.25663 5.27666 5.59966 5.88907 5.90689 5.97733 6.08175 6.21077 6.44894 6.57722 6.74394 7.08876 7.44036 7.92400 8.55160 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.001779 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.282823 B =15737.359992 C =16073.765267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.084 0.916 4 C -0.111 4.111 5 H 0.123 0.877 6 C 0.542 3.458 7 O -0.581 6.581 8 N -0.616 5.616 9 C 0.101 3.899 10 C -0.117 4.117 11 C 0.077 3.923 12 H 0.073 0.927 13 N -0.668 5.668 14 C 0.068 3.932 15 C 0.441 3.559 16 O -0.619 6.619 17 N -0.586 5.586 18 C -0.410 4.410 19 H 0.072 0.928 20 C -0.042 4.042 21 N -0.917 5.917 22 Si 1.137 2.863 23 H -0.281 1.281 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.107 3.893 27 C -0.114 4.114 28 C 0.041 3.959 29 N -0.541 5.541 30 C 0.017 3.983 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.345 0.655 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.261 0.739 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.728 0.223 21.831 30.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.102 0.898 4 C -0.133 4.133 5 H 0.141 0.859 6 C 0.332 3.668 7 O -0.460 6.460 8 N -0.349 5.349 9 C -0.021 4.021 10 C -0.156 4.156 11 C -0.033 4.033 12 H 0.091 0.909 13 N -0.301 5.301 14 C -0.064 4.064 15 C 0.229 3.771 16 O -0.504 6.504 17 N -0.225 5.225 18 C -0.539 4.539 19 H 0.090 0.910 20 C -0.240 4.240 21 N -0.556 5.556 22 Si 0.957 3.043 23 H -0.206 1.206 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.017 4.017 27 C -0.153 4.153 28 C -0.086 4.086 29 N -0.266 5.266 30 C -0.131 4.131 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.164 0.836 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.220 0.780 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 20.657 -0.496 20.392 29.031 hybrid contribution 0.511 -0.205 1.486 1.584 sum 21.168 -0.701 21.878 30.450 Atomic orbital electron populations 1.21884 0.94857 1.01475 1.01932 1.22221 0.95704 0.96520 0.88004 0.89773 1.22335 0.94754 0.99630 0.96569 0.85909 1.20454 0.84155 0.83515 0.78642 1.90691 1.62148 1.23741 1.69441 1.48501 1.34489 1.21489 1.30471 1.22318 0.99327 0.83079 0.97402 1.22710 0.93754 1.00907 0.98208 1.22713 0.96147 0.95331 0.89135 0.90891 1.60113 1.31832 1.05763 1.32382 1.21592 0.94085 0.97844 0.92915 1.20884 0.82196 0.84264 0.89779 1.90513 1.66944 1.32617 1.60355 1.41983 1.34244 1.26221 1.20075 1.20567 1.20437 1.14208 0.98715 0.91013 1.27790 0.95743 0.92358 1.08120 1.70908 1.42841 1.28001 1.13883 0.82557 0.75531 0.76307 0.69860 1.20624 1.19737 1.19615 1.22170 0.89403 0.96707 0.93397 1.22551 0.99333 0.97162 0.96221 1.23265 0.91237 0.98966 0.95129 1.64644 1.27570 1.27486 1.06935 1.22551 1.01110 0.95158 0.94312 0.94261 0.91587 0.92020 0.88912 0.89109 0.90373 0.88212 0.83555 0.86980 0.91382 0.78038 0.92843 0.91876 0.91529 0.91873 0.88628 0.91461 0.89517 0.91306 0.90629 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.37 71.98 0.60 -1.96 16 2 C 0.08 1.18 3.08 45.06 0.14 1.31 16 3 H 0.08 0.79 7.73 -2.39 -0.02 0.78 16 4 C -0.11 -1.64 2.98 -10.66 -0.03 -1.67 16 5 H 0.12 1.08 7.11 -2.39 -0.02 1.07 16 6 C 0.54 12.09 4.76 87.66 0.42 12.51 16 7 O -0.58 -18.47 15.22 -3.03 -0.05 -18.52 16 8 N -0.62 -11.90 2.85 -811.82 -2.31 -14.22 16 9 C 0.10 1.22 6.10 86.73 0.53 1.75 16 10 C -0.12 -1.86 6.65 31.79 0.21 -1.65 16 11 C 0.08 1.62 3.38 46.30 0.16 1.77 16 12 H 0.07 1.40 7.83 -2.39 -0.02 1.39 16 13 N -0.67 -19.52 6.04 -488.45 -2.95 -22.47 16 14 C 0.07 2.14 6.03 85.55 0.52 2.65 16 15 C 0.44 20.40 7.82 87.65 0.69 21.09 16 16 O -0.62 -34.12 15.78 -3.07 -0.05 -34.17 16 17 N -0.59 -29.23 5.28 -306.99 -1.62 -30.85 16 18 C -0.41 -23.32 9.68 84.04 0.81 -22.51 16 19 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 20 C -0.04 -2.25 5.50 84.93 0.47 -1.79 16 21 N -0.92 -50.57 13.68 21.66 0.30 -50.27 16 22 Si 1.14 48.52 29.92 68.60 2.05 50.57 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 C 0.11 2.46 6.31 86.85 0.55 3.01 16 27 C -0.11 -1.72 6.57 31.86 0.21 -1.51 16 28 C 0.04 0.50 6.56 86.71 0.57 1.06 16 29 N -0.54 -8.08 5.19 -883.75 -4.59 -12.67 16 30 C 0.02 0.17 9.40 127.69 1.20 1.37 16 31 H 0.04 0.98 7.03 -2.39 -0.02 0.97 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.05 6.95 -2.39 -0.02 1.03 16 34 H 0.09 0.73 8.01 -2.39 -0.02 0.71 16 35 H 0.09 0.80 7.87 -2.38 -0.02 0.78 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.35 11.10 8.14 -89.70 -0.73 10.37 16 39 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.07 1.87 8.09 -2.38 -0.02 1.85 16 41 H 0.39 17.46 6.73 -92.71 -0.62 16.83 16 42 H 0.26 13.81 6.78 -92.71 -0.63 13.18 16 43 H 0.06 1.62 8.04 -2.39 -0.02 1.61 16 44 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.06 1.39 6.90 -2.39 -0.02 1.38 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 0.53 7.96 -2.39 -0.02 0.52 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.04 0.31 8.00 -2.39 -0.02 0.29 16 Total: -1.00 -77.42 402.08 -2.47 -79.88 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.28 Total: 37.25 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 7.03 Total: 15.45 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -11.18 Total: -130.48 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.09 Total: -52.69 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.05 Total: 50.57 kcal Total: -77.42 -2.47 -79.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182677009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.547 kcal (2) G-P(sol) polarization free energy of solvation -77.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds