Wall clock time and date at job start Tue Mar 31 2020 21:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50104 * 2 1 4 4 C 1.53201 * 109.49538 * 120.05982 * 2 1 3 5 5 N 1.46920 * 108.77364 * 65.34840 * 4 2 1 6 6 C 1.34777 * 120.63268 * 233.58247 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.46377 * 119.32675 * 90.00151 * 9 8 6 11 11 C 1.53247 * 109.15365 * 209.03667 * 10 9 8 12 12 C 1.53235 * 108.55869 * 304.52213 * 11 10 9 13 13 N 1.46379 * 109.15855 * 55.48015 * 12 11 10 14 14 C 1.34136 * 119.33038 * 269.72937 * 9 8 6 15 15 O 1.21587 * 118.69314 * 359.42571 * 14 9 8 16 16 C 1.46927 * 118.74032 * 53.86485 * 5 4 2 17 17 C 1.53627 * 108.54183 * 306.09058 * 16 5 4 18 18 C 1.53040 * 109.24108 * 54.85576 * 17 16 5 19 19 H 1.08999 * 109.46244 * 58.53099 * 18 17 16 20 20 C 1.53000 * 109.46054 * 178.49243 * 18 17 16 21 21 N 1.46497 * 109.47244 * 295.06833 * 20 18 17 22 22 C 1.36935 * 120.00255 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99940 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00074 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00063 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00061 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47069 * 90.00123 * 26 24 22 28 28 H 1.48496 * 109.47403 * 209.99910 * 26 24 22 29 29 H 1.48500 * 109.47288 * 330.00150 * 26 24 22 30 30 H 1.09001 * 109.47423 * 299.93999 * 1 2 3 31 31 H 1.09003 * 109.46983 * 59.94088 * 1 2 3 32 32 H 1.09004 * 109.46874 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58322 * 305.56115 * 4 2 1 34 34 H 1.09001 * 109.70341 * 185.20689 * 4 2 1 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 1.09005 * 109.52810 * 328.93836 * 10 9 8 38 38 H 1.09002 * 109.52453 * 89.13401 * 10 9 8 39 39 H 1.09002 * 109.61608 * 64.24593 * 11 10 9 40 40 H 1.08995 * 109.62343 * 184.61158 * 11 10 9 41 41 H 1.09003 * 109.52197 * 175.38372 * 12 11 10 42 42 H 1.08997 * 109.52682 * 295.57218 * 12 11 10 43 43 H 0.97002 * 119.33478 * 150.91581 * 13 12 11 44 44 H 1.09005 * 109.58858 * 65.92197 * 16 5 4 45 45 H 1.08995 * 109.58867 * 186.34993 * 16 5 4 46 46 H 1.08999 * 109.63425 * 294.86802 * 17 16 5 47 47 H 1.08997 * 109.46146 * 174.73964 * 17 16 5 48 48 H 1.09006 * 109.46937 * 55.06837 * 20 18 17 49 49 H 1.09004 * 109.47278 * 175.06625 * 20 18 17 50 50 H 0.97001 * 119.99721 * 359.97438 * 21 20 18 51 51 H 0.96999 * 119.99954 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 1.6521 -2.1379 1.1700 6 6 0.9754 -2.7220 2.1786 7 8 0.6815 -2.0790 3.1641 8 6 0.5838 -4.1740 2.0820 9 7 -0.1373 -4.5672 3.2951 10 6 -1.5935 -4.4256 3.3412 11 6 -2.0295 -4.1839 4.7904 12 6 -1.4922 -5.3267 5.6584 13 7 -0.0415 -5.4193 5.4865 14 6 0.5497 -5.0546 4.3390 15 8 1.7566 -5.1662 4.2427 16 6 2.0202 -2.9053 -0.0276 17 6 1.5044 -2.1561 -1.2656 18 6 2.0416 -0.7231 -1.2480 19 1 3.1313 -0.7439 -1.2346 20 6 1.5615 0.0166 -2.4983 21 7 2.1482 -0.6043 -3.6885 22 6 1.8594 -0.1090 -4.9321 23 1 1.1995 0.7396 -5.0354 24 6 2.4157 -0.6970 -6.0597 25 7 3.2212 -1.7303 -5.9336 26 14 2.0224 -0.0210 -7.7560 27 1 3.0154 1.0231 -8.1153 28 1 2.0781 -1.1206 -8.7524 29 1 0.6610 0.5722 -7.7491 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6002 -0.2727 2.1390 34 1 3.1273 -0.6455 1.3012 35 1 1.4799 -4.7858 1.9771 36 1 -0.0593 -4.3199 1.2140 37 1 -1.8971 -3.5803 2.7237 38 1 -2.0601 -5.3371 2.9676 39 1 -1.6233 -3.2353 5.1414 40 1 -3.1178 -4.1589 4.8458 41 1 -1.7231 -5.1286 6.7051 42 1 -1.9558 -6.2648 5.3535 43 1 0.5030 -5.7544 6.2160 44 1 3.1047 -3.0016 -0.0809 45 1 1.5653 -3.8947 0.0183 46 1 0.4147 -2.1362 -1.2540 47 1 1.8495 -2.6629 -2.1668 48 1 0.4745 -0.0385 -2.5582 49 1 1.8699 1.0606 -2.4437 50 1 2.7412 -1.3663 -3.5956 51 1 3.6097 -2.1414 -6.7217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184735177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:32 Heat of formation + Delta-G solvation = -47.264628 kcal Electronic energy + Delta-G solvation = -30754.716046 eV Core-core repulsion = 26689.308469 eV Total energy + Delta-G solvation = -4065.407577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09894 -40.08635 -38.00339 -36.66542 -35.14511 -34.90605 -33.39932 -31.79630 -31.32730 -30.29806 -28.82394 -27.02702 -26.45023 -25.54747 -23.71903 -23.27682 -22.95446 -21.45493 -20.19555 -19.13812 -18.32044 -17.85161 -17.51959 -17.41291 -16.89740 -16.07629 -15.67881 -15.52521 -15.04092 -14.77873 -14.49218 -14.34486 -14.18441 -14.06885 -13.99245 -13.80280 -13.56838 -13.30919 -12.94441 -12.66382 -12.48870 -12.40551 -12.23202 -11.91028 -11.76634 -11.67316 -11.55744 -11.34848 -11.03838 -10.93011 -10.76734 -10.35549 -10.31332 -10.24307 -10.17156 -9.99696 -9.91725 -9.63266 -9.39507 -8.86185 -8.82023 -8.52754 -6.90684 -5.77001 -3.04831 2.30486 2.62714 2.90577 3.16619 3.43034 3.48411 3.49771 3.51059 4.26050 4.35637 4.50493 4.58643 4.64974 4.77562 4.84113 4.94194 4.98259 5.04043 5.05167 5.14551 5.16914 5.23507 5.27004 5.30043 5.48184 5.55134 5.64720 5.68797 5.73818 5.82029 5.87486 5.90973 5.96404 6.06248 6.09501 6.23124 6.25855 6.29872 6.37932 6.47090 6.53775 6.68324 6.79551 6.82855 6.94979 7.42209 7.54232 7.70095 8.17239 8.37256 8.42550 9.53634 10.12255 10.46779 11.45986 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.002260 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.495124 B =12388.141103 C =12610.747989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.501 3.499 7 O -0.540 6.540 8 C 0.112 3.888 9 N -0.605 5.605 10 C 0.116 3.884 11 C -0.153 4.153 12 C 0.111 3.889 13 N -0.738 5.738 14 C 0.717 3.283 15 O -0.597 6.597 16 C 0.104 3.896 17 C -0.127 4.127 18 C -0.088 4.088 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.414 0.586 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.021 0.979 49 H 0.017 0.983 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 -7.429 22.985 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.004 4.004 5 N -0.338 5.338 6 C 0.287 3.713 7 O -0.417 6.417 8 C -0.015 4.015 9 N -0.341 5.341 10 C -0.007 4.007 11 C -0.192 4.192 12 C -0.014 4.014 13 N -0.395 5.395 14 C 0.418 3.582 15 O -0.475 6.475 16 C -0.019 4.019 17 C -0.165 4.165 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.251 0.749 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.039 0.961 49 H 0.034 0.966 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.135 -6.990 23.183 26.652 hybrid contribution 0.138 0.077 -0.808 0.823 sum -10.997 -6.914 22.375 25.872 Atomic orbital electron populations 1.21837 0.94997 1.01785 1.01336 1.21466 0.96569 0.99450 0.94258 0.90140 1.21645 0.99400 0.80362 0.99014 1.48107 1.55804 1.11583 1.18320 1.21092 0.77743 0.89822 0.82612 1.90652 1.55034 1.65115 1.30897 1.21261 0.99757 0.93373 0.87128 1.46325 1.06859 1.66426 1.14507 1.21577 0.79569 1.01971 0.97623 1.22183 1.02223 0.99825 0.94920 1.21513 0.80620 0.98412 1.00822 1.44879 1.08274 1.70979 1.15407 1.15331 0.84783 0.77743 0.80358 1.90958 1.12593 1.62014 1.81966 1.21994 1.00851 0.94607 0.84409 1.22047 1.01235 0.96060 0.97126 1.21299 1.00326 0.94661 0.94456 0.91014 1.20711 0.95863 0.94642 0.85678 1.42384 1.56808 1.37591 1.00844 1.19222 1.22979 1.10784 0.83858 0.91318 1.24721 1.00128 0.98415 0.97793 1.69649 1.35675 1.24426 1.28554 0.86205 0.77777 0.77792 0.84516 1.21781 1.21799 1.20832 0.93479 0.91997 0.92719 0.89402 0.91654 0.86536 0.87403 0.89899 0.91481 0.89901 0.88602 0.89954 0.91783 0.74892 0.90840 0.90168 0.91368 0.89362 0.96117 0.96557 0.78293 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.38 37.16 0.31 -1.50 16 2 C -0.10 -1.27 2.72 -90.49 -0.25 -1.51 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.51 5.82 -3.71 -0.02 1.49 16 5 N -0.60 -7.60 2.41 -172.50 -0.41 -8.01 16 6 C 0.50 6.78 7.76 -10.98 -0.09 6.69 16 7 O -0.54 -9.03 15.84 5.56 0.09 -8.94 16 8 C 0.11 1.21 4.15 -5.19 -0.02 1.19 16 9 N -0.60 -6.57 2.30 -181.14 -0.42 -6.99 16 10 C 0.12 0.85 6.49 -3.98 -0.03 0.82 16 11 C -0.15 -0.90 6.20 -26.48 -0.16 -1.06 16 12 C 0.11 0.59 7.20 -3.99 -0.03 0.56 16 13 N -0.74 -6.58 5.58 -65.53 -0.37 -6.94 16 14 C 0.72 9.21 8.18 -88.06 -0.72 8.49 16 15 O -0.60 -10.10 16.49 5.29 0.09 -10.01 16 16 C 0.10 1.19 6.37 -3.48 -0.02 1.17 16 17 C -0.13 -1.75 4.92 -26.39 -0.13 -1.88 16 18 C -0.09 -1.34 1.96 -90.58 -0.18 -1.51 16 19 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 20 C 0.16 3.06 5.19 -4.04 -0.02 3.04 16 21 N -0.73 -17.90 5.32 -59.91 -0.32 -18.22 16 22 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 26 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 32 H 0.05 0.70 5.97 -51.93 -0.31 0.39 16 33 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 1.32 7.08 -51.93 -0.37 0.96 16 36 H 0.11 0.84 7.61 -51.93 -0.40 0.45 16 37 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.41 3.19 8.88 -40.82 -0.36 2.83 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.73 5.93 -51.93 -0.31 0.43 16 46 H 0.07 0.94 6.34 -51.93 -0.33 0.61 16 47 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 48 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.38 9.75 6.84 -40.82 -0.28 9.47 16 51 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -36.27 392.62 -9.72 -45.99 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.39 Total: 8.27 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.60 Total: 8.78 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.79 Total: -67.21 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.18 Total: -18.95 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.27 -9.72 -45.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184735177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.274 kcal (2) G-P(sol) polarization free energy of solvation -36.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds