Wall clock time and date at job start Tue Mar 31 2020 21:52:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.50045 * 2 1
4 4 C 1.53184 * 109.50013 * 120.07100 * 2 1 3
5 5 N 1.46927 * 108.77777 * 65.34312 * 4 2 1
6 6 C 1.34770 * 120.63646 * 233.58618 * 5 4 2
7 7 O 1.21280 * 119.99788 * 0.02562 * 6 5 4
8 8 C 1.50699 * 120.00381 * 179.97438 * 6 5 4
9 9 N 1.46896 * 109.47473 * 180.02562 * 8 6 5
10 10 C 1.47182 * 111.00244 * 169.99972 * 9 8 6
11 11 C 1.52986 * 108.72957 * 54.37278 * 10 9 8
12 12 N 1.46012 * 110.04361 * 50.28650 * 11 10 9
13 13 C 1.33713 * 122.92419 * 342.10607 * 12 11 10
14 14 O 1.21280 * 118.62219 * 181.42327 * 13 12 11
15 15 C 1.46901 * 111.00217 * 292.89599 * 9 8 6
16 16 C 1.46927 * 118.73285 * 53.86826 * 5 4 2
17 17 C 1.53625 * 108.54366 * 306.08925 * 16 5 4
18 18 C 1.53044 * 109.23795 * 54.85972 * 17 16 5
19 19 H 1.08994 * 109.46424 * 58.53457 * 18 17 16
20 20 C 1.53005 * 109.45610 * 178.49041 * 18 17 16
21 21 N 1.46495 * 109.47200 * 295.06644 * 20 18 17
22 22 C 1.36935 * 119.99804 * 180.02562 * 21 20 18
23 23 H 1.07996 * 120.00277 * 359.97438 * 22 21 20
24 24 C 1.38820 * 120.00059 * 180.02562 * 22 21 20
25 25 N 1.31621 * 119.99608 * 0.02562 * 24 22 21
26 26 Si 1.86797 * 120.00124 * 179.97438 * 24 22 21
27 27 H 1.48504 * 109.47100 * 0.02562 * 26 24 22
28 28 H 1.48503 * 109.47065 * 119.99774 * 26 24 22
29 29 H 1.48503 * 109.47233 * 240.00070 * 26 24 22
30 30 H 1.08999 * 109.47448 * 299.93474 * 1 2 3
31 31 H 1.09008 * 109.47109 * 59.93101 * 1 2 3
32 32 H 1.09000 * 109.47342 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.58632 * 305.56298 * 4 2 1
34 34 H 1.09000 * 109.58961 * 185.14052 * 4 2 1
35 35 H 1.08998 * 109.46774 * 60.00641 * 8 6 5
36 36 H 1.08994 * 109.46832 * 300.00555 * 8 6 5
37 37 H 1.09000 * 109.59443 * 294.59802 * 10 9 8
38 38 H 1.09001 * 109.71817 * 174.21424 * 10 9 8
39 39 H 1.08999 * 109.37154 * 290.11593 * 11 10 9
40 40 H 1.08998 * 109.38003 * 170.46947 * 11 10 9
41 41 H 0.97001 * 118.53326 * 161.81488 * 12 11 10
42 42 H 1.08998 * 109.38806 * 47.08203 * 15 9 8
43 43 H 1.09001 * 109.39041 * 166.77674 * 15 9 8
44 44 H 1.08994 * 109.58804 * 65.92529 * 16 5 4
45 45 H 1.09004 * 109.58343 * 186.35186 * 16 5 4
46 46 H 1.08996 * 109.63443 * 294.87035 * 17 16 5
47 47 H 1.08995 * 109.45872 * 174.74294 * 17 16 5
48 48 H 1.09001 * 109.47202 * 55.07393 * 20 18 17
49 49 H 1.09001 * 109.47001 * 175.06519 * 20 18 17
50 50 H 0.96998 * 120.00106 * 0.02562 * 21 20 18
51 51 H 0.97001 * 119.99742 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0413 -0.7235 1.2496
5 7 1.6521 -2.1381 1.1696
6 6 0.9754 -2.7223 2.1781
7 8 0.6816 -2.0794 3.1637
8 6 0.5829 -4.1740 2.0808
9 7 -0.1398 -4.5685 3.2973
10 6 -0.7441 -5.9017 3.1429
11 6 0.3478 -6.8913 2.7319
12 7 1.4925 -6.7753 3.6308
13 6 1.6947 -5.7125 4.4166
14 8 2.6864 -5.6861 5.1144
15 6 0.7479 -4.5470 4.4675
16 6 2.0202 -2.9052 -0.0282
17 6 1.5043 -2.1558 -1.2660
18 6 2.0415 -0.7229 -1.2482
19 1 3.1311 -0.7436 -1.2349
20 6 1.5613 0.0170 -2.4985
21 7 2.1480 -0.6037 -3.6887
22 6 1.8599 -0.1076 -4.9321
23 1 1.2000 0.7410 -5.0353
24 6 2.4154 -0.6961 -6.0600
25 7 3.2186 -1.7312 -5.9343
26 14 2.0219 -0.0197 -7.7562
27 1 1.1009 1.1379 -7.6261
28 1 3.2771 0.4189 -8.4176
29 1 1.3754 -1.0779 -8.5733
30 1 -0.3634 0.5128 0.8905
31 1 -0.3634 0.5149 -0.8894
32 1 -0.3634 -1.0276 -0.0005
33 1 1.6002 -0.2731 2.1389
34 1 3.1274 -0.6455 1.2984
35 1 1.4785 -4.7862 1.9753
36 1 -0.0606 -4.3189 1.2131
37 1 -1.5146 -5.8668 2.3728
38 1 -1.1860 -6.2168 4.0882
39 1 0.6657 -6.6757 1.7119
40 1 -0.0475 -7.9060 2.7788
41 1 2.1326 -7.5035 3.6623
42 1 1.3157 -3.6166 4.4739
43 1 0.1500 -4.6105 5.3766
44 1 3.1046 -3.0015 -0.0815
45 1 1.5652 -3.8947 0.0176
46 1 0.4146 -2.1360 -1.2544
47 1 1.8494 -2.6625 -2.1672
48 1 0.4743 -0.0381 -2.5582
49 1 1.8697 1.0610 -2.4437
50 1 2.7405 -1.3661 -3.5960
51 1 3.6070 -2.1422 -6.7224
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001184924731.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:52:47
Heat of formation + Delta-G solvation = -43.389278 kcal
Electronic energy + Delta-G solvation = -30862.348057 eV
Core-core repulsion = 26797.108528 eV
Total energy + Delta-G solvation = -4065.239529 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.29604 -40.19194 -38.31459 -37.37299 -35.01272 -34.51704 -33.46135 -31.82194
-30.35536 -30.26857 -29.43617 -27.06422 -26.57519 -25.24671 -23.74685 -23.24415
-22.99916 -21.51187 -20.41570 -19.27768 -18.34265 -17.81899 -17.65496 -17.01771
-16.75138 -16.27730 -15.83146 -15.51221 -15.26745 -15.07608 -14.92090 -14.44769
-14.25141 -14.03757 -13.90873 -13.69411 -13.45624 -13.35524 -13.03076 -12.88999
-12.54075 -12.48911 -12.33679 -12.08297 -11.95021 -11.83332 -11.56429 -11.37083
-11.07374 -10.95739 -10.81401 -10.79208 -10.36680 -10.25771 -10.18789 -9.98139
-9.77275 -9.66468 -9.59481 -8.89171 -8.76189 -8.59718 -6.93366 -5.79913
-3.07608 2.21285 2.50040 2.64251 2.84332 3.40744 3.44767 3.47028
3.48782 4.04638 4.25009 4.33356 4.38942 4.56315 4.67154 4.76294
4.79411 4.91700 4.95187 4.99021 5.01582 5.09868 5.13434 5.22298
5.25822 5.40059 5.43178 5.51603 5.59741 5.72106 5.78187 5.83108
5.86029 6.02267 6.06544 6.12503 6.19905 6.26655 6.29257 6.36422
6.40928 6.43952 6.49384 6.64101 6.79449 6.81552 6.92072 7.33418
7.68447 7.76240 8.09240 8.39683 9.50966 10.09265 10.43743 11.43160
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017882 B = 0.002443 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1565.422224 B =11459.548316 C =12221.648216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.098 4.098
3 H 0.081 0.919
4 C 0.118 3.882
5 N -0.604 5.604
6 C 0.516 3.484
7 O -0.529 6.529
8 C 0.027 3.973
9 N -0.506 5.506
10 C 0.036 3.964
11 C 0.069 3.931
12 N -0.726 5.726
13 C 0.485 3.515
14 O -0.549 6.549
15 C 0.037 3.963
16 C 0.105 3.895
17 C -0.127 4.127
18 C -0.089 4.089
19 H 0.071 0.929
20 C 0.158 3.842
21 N -0.732 5.732
22 C -0.236 4.236
23 H 0.070 0.930
24 C -0.015 4.015
25 N -0.934 5.934
26 Si 0.905 3.095
27 H -0.281 1.281
28 H -0.292 1.292
29 H -0.292 1.292
30 H 0.048 0.952
31 H 0.061 0.939
32 H 0.055 0.945
33 H 0.091 0.909
34 H 0.066 0.934
35 H 0.067 0.933
36 H 0.112 0.888
37 H 0.104 0.896
38 H 0.092 0.908
39 H 0.071 0.929
40 H 0.086 0.914
41 H 0.399 0.601
42 H 0.128 0.872
43 H 0.115 0.885
44 H 0.071 0.929
45 H 0.077 0.923
46 H 0.069 0.931
47 H 0.087 0.913
48 H 0.022 0.978
49 H 0.017 0.983
50 H 0.383 0.617
51 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.498 -10.066 18.970 22.746
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.118 4.118
3 H 0.099 0.901
4 C -0.004 4.004
5 N -0.338 5.338
6 C 0.303 3.697
7 O -0.405 6.405
8 C -0.104 4.104
9 N -0.229 5.229
10 C -0.093 4.093
11 C -0.057 4.057
12 N -0.380 5.380
13 C 0.271 3.729
14 O -0.426 6.426
15 C -0.093 4.093
16 C -0.018 4.018
17 C -0.165 4.165
18 C -0.108 4.108
19 H 0.089 0.911
20 C 0.031 3.969
21 N -0.377 5.377
22 C -0.368 4.368
23 H 0.088 0.912
24 C -0.211 4.211
25 N -0.583 5.583
26 Si 0.737 3.263
27 H -0.206 1.206
28 H -0.219 1.219
29 H -0.219 1.219
30 H 0.067 0.933
31 H 0.080 0.920
32 H 0.074 0.926
33 H 0.109 0.891
34 H 0.084 0.916
35 H 0.085 0.915
36 H 0.130 0.870
37 H 0.122 0.878
38 H 0.110 0.890
39 H 0.090 0.910
40 H 0.104 0.896
41 H 0.235 0.765
42 H 0.146 0.854
43 H 0.133 0.867
44 H 0.090 0.910
45 H 0.096 0.904
46 H 0.088 0.912
47 H 0.106 0.894
48 H 0.039 0.961
49 H 0.035 0.965
50 H 0.217 0.783
51 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -7.762 -9.046 19.808 23.118
hybrid contribution 0.938 -0.987 -1.440 1.981
sum -6.824 -10.033 18.368 22.014
Atomic orbital electron populations
1.21842 0.94825 1.01911 1.01459 1.21469 0.96703 0.99476 0.94137
0.90053 1.21681 0.99374 0.80077 0.99298 1.48097 1.55736 1.11737
1.18277 1.20276 0.77626 0.88920 0.82832 1.90667 1.54165 1.64872
1.30836 1.22175 0.99191 0.94378 0.94674 1.62190 1.32364 1.26007
1.02343 1.22675 0.96264 0.85987 1.04327 1.22184 0.87560 1.02024
0.93966 1.45676 1.27844 1.21450 1.42993 1.21496 0.87497 0.84800
0.79131 1.90773 1.29189 1.80296 1.42308 1.22629 0.93968 0.97134
0.95606 1.21973 1.00580 0.94600 0.84639 1.22042 1.01360 0.96098
0.96969 1.21302 1.00257 0.94614 0.94576 0.91071 1.20714 0.95912
0.94670 0.85625 1.42391 1.56848 1.37536 1.00885 1.19275 1.22907
1.10741 0.83828 0.91235 1.24722 1.00138 0.98406 0.97805 1.69660
1.35857 1.24399 1.28428 0.86135 0.77427 0.78005 0.84749 1.20593
1.21905 1.21905 0.93300 0.92013 0.92648 0.89072 0.91600 0.91477
0.86995 0.87807 0.88987 0.91031 0.89614 0.76491 0.85414 0.86705
0.91023 0.90426 0.91241 0.89431 0.96052 0.96489 0.78339 0.93622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.79 8.38 37.15 0.31 -1.48 16
2 C -0.10 -1.22 2.72 -90.50 -0.25 -1.47 16
3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
4 C 0.12 1.40 5.82 -3.71 -0.02 1.37 16
5 N -0.60 -6.89 2.41 -172.51 -0.41 -7.31 16
6 C 0.52 6.14 7.29 -10.99 -0.08 6.06 16
7 O -0.53 -7.87 13.94 5.56 0.08 -7.79 16
8 C 0.03 0.23 2.85 -4.98 -0.01 0.21 16
9 N -0.51 -4.24 4.75 -237.57 -1.13 -5.37 16
10 C 0.04 0.18 6.02 -3.68 -0.02 0.15 16
11 C 0.07 0.29 6.46 -4.31 -0.03 0.26 16
12 N -0.73 -5.19 5.33 -61.07 -0.33 -5.51 16
13 C 0.49 5.15 7.07 -11.68 -0.08 5.07 16
14 O -0.55 -8.24 17.82 5.56 0.10 -8.14 16
15 C 0.04 0.37 5.49 -5.20 -0.03 0.34 16
16 C 0.10 1.10 6.37 -3.48 -0.02 1.08 16
17 C -0.13 -1.68 4.92 -26.38 -0.13 -1.81 16
18 C -0.09 -1.30 1.96 -90.57 -0.18 -1.47 16
19 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
20 C 0.16 3.00 5.19 -4.04 -0.02 2.98 16
21 N -0.73 -17.67 5.32 -59.91 -0.32 -17.99 16
22 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16
23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
24 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16
25 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16
26 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16
27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.06 0.81 6.59 -51.92 -0.34 0.47 16
32 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16
33 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16
34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.07 0.55 6.03 -51.93 -0.31 0.24 16
36 H 0.11 0.77 7.64 -51.93 -0.40 0.37 16
37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16
39 H 0.07 0.28 7.10 -51.93 -0.37 -0.09 16
40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16
41 H 0.40 2.59 8.84 -40.82 -0.36 2.23 16
42 H 0.13 1.58 5.88 -51.93 -0.31 1.28 16
43 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16
44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
45 H 0.08 0.63 5.93 -51.93 -0.31 0.33 16
46 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16
47 H 0.09 1.36 7.15 -51.93 -0.37 0.99 16
48 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16
49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
50 H 0.38 9.59 6.84 -40.82 -0.28 9.31 16
51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
LS Contribution 385.10 15.07 5.80 5.80
Total: -1.00 -34.57 385.10 -9.48 -44.06
By element:
Atomic # 1 Polarization: 15.96 SS G_CDS: -8.17 Total: 7.79 kcal
Atomic # 6 Polarization: 4.98 SS G_CDS: -0.81 Total: 4.17 kcal
Atomic # 7 Polarization: -61.45 SS G_CDS: -1.46 Total: -62.91 kcal
Atomic # 8 Polarization: -16.10 SS G_CDS: 0.18 Total: -15.93 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.57 -9.48 -44.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001184924731.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.667 kcal
(2) G-P(sol) polarization free energy of solvation -34.573 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds