Wall clock time and date at job start Tue Mar 31 2020 22:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.27080 * 2 1 4 4 C 1.53995 * 110.30498 * 237.90926 * 2 1 3 5 5 N 1.47895 * 107.05520 * 242.20942 * 4 2 1 6 6 C 1.46902 * 110.99712 * 214.15660 * 5 4 2 7 7 C 1.50702 * 109.47027 * 170.00079 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46646 * 60.00463 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47259 * 300.00225 * 14 12 10 18 18 C 1.48527 * 105.82449 * 334.67096 * 5 4 2 19 19 C 1.54591 * 110.39096 * 122.14450 * 2 1 3 20 20 H 1.09005 * 110.72570 * 22.56007 * 19 2 1 21 21 N 1.46497 * 110.72641 * 259.45004 * 19 2 1 22 22 C 1.34778 * 120.00132 * 155.00044 * 21 19 2 23 23 O 1.21278 * 119.99800 * 0.02562 * 22 21 19 24 24 C 1.50698 * 120.00316 * 180.02562 * 22 21 19 25 25 H 1.09001 * 110.27170 * 300.70889 * 24 22 21 26 26 C 1.54592 * 110.31144 * 178.61188 * 24 22 21 27 27 C 1.55104 * 102.84546 * 219.18700 * 26 24 22 28 28 N 1.48530 * 103.28624 * 37.30647 * 27 26 24 29 29 C 1.46895 * 111.00206 * 200.33573 * 28 27 26 30 30 C 1.47906 * 105.81943 * 320.84810 * 28 27 26 31 31 H 1.08994 * 109.47301 * 180.63801 * 1 2 3 32 32 H 1.09006 * 109.46992 * 300.63463 * 1 2 3 33 33 H 1.08996 * 109.47239 * 60.63415 * 1 2 3 34 34 H 1.09003 * 109.91316 * 122.85590 * 4 2 1 35 35 H 1.08995 * 109.91803 * 1.56967 * 4 2 1 36 36 H 1.09004 * 109.47131 * 50.00323 * 6 5 4 37 37 H 1.09000 * 109.47732 * 290.00434 * 6 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 39 39 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 40 40 H 1.09004 * 110.66790 * 157.64063 * 18 5 4 41 41 H 1.09002 * 110.67104 * 280.77408 * 18 5 4 42 42 H 0.96997 * 119.99798 * 335.00569 * 21 19 2 43 43 H 1.08997 * 110.72729 * 337.49002 * 26 24 22 44 44 H 1.09005 * 110.72218 * 100.77008 * 26 24 22 45 45 H 1.09008 * 110.59174 * 278.87100 * 27 26 24 46 46 H 1.09002 * 110.68565 * 155.78643 * 27 26 24 47 47 H 1.09001 * 109.47259 * 177.39566 * 29 28 27 48 48 H 1.09005 * 109.46622 * 297.39536 * 29 28 27 49 49 H 1.09001 * 109.47508 * 57.39436 * 29 28 27 50 50 H 1.08996 * 109.91573 * 265.97478 * 30 28 27 51 51 H 1.09005 * 109.91723 * 144.68205 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0644 -0.7673 -1.2236 5 7 2.8332 -1.9216 -0.7099 6 6 3.9767 -2.2224 -1.5817 7 6 4.8699 -3.2321 -0.9081 8 8 4.5821 -3.6595 0.1899 9 7 5.9855 -3.6648 -1.5285 10 6 6.7952 -4.5876 -0.9182 11 1 6.5388 -4.9681 0.0596 12 6 7.9455 -5.0333 -1.5574 13 7 8.2577 -4.5700 -2.7469 14 14 9.0490 -6.2901 -0.7255 15 1 8.2775 -7.5326 -0.4678 16 1 10.2027 -6.5974 -1.6086 17 1 9.5444 -5.7391 0.5615 18 6 3.2881 -1.5326 0.6494 19 6 2.0687 -0.7710 1.2269 20 1 1.3206 -1.4691 1.6027 21 7 2.4845 0.1575 2.2811 22 6 2.5017 -0.2466 3.5667 23 8 2.1734 -1.3790 3.8509 24 6 2.9288 0.7086 4.6512 25 1 3.9465 1.0547 4.4703 26 6 2.8318 0.0271 6.0354 27 6 2.2902 1.1632 6.9419 28 7 1.3326 1.8771 6.0590 29 6 1.0783 3.2381 6.5497 30 6 1.9619 1.9051 4.7208 31 1 -0.3633 -1.0275 0.0114 32 1 -0.3633 0.5237 0.8843 33 1 -0.3633 0.5039 -0.8956 34 1 2.7147 -0.1204 -1.8125 35 1 1.2326 -1.1174 -1.8347 36 1 4.5396 -1.3084 -1.7710 37 1 3.6162 -2.6293 -2.5265 38 1 6.2156 -3.3233 -2.4067 39 1 9.0609 -4.8808 -3.1930 40 1 3.5090 -2.4160 1.2487 41 1 4.1581 -0.8784 0.5915 42 1 2.7473 1.0631 2.0537 43 1 2.1329 -0.8087 6.0057 44 1 3.8146 -0.3023 6.3728 45 1 3.0985 1.8268 7.2491 46 1 1.7780 0.7509 7.8113 47 1 0.4102 3.7541 5.8601 48 1 0.6153 3.1883 7.5353 49 1 2.0205 3.7818 6.6180 50 1 2.5131 2.8362 4.5891 51 1 1.1978 1.8105 3.9491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211026122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:50 Heat of formation + Delta-G solvation = -54.880275 kcal Electronic energy + Delta-G solvation = -30087.661765 eV Core-core repulsion = 26021.923949 eV Total energy + Delta-G solvation = -4065.737816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.52637 -39.39523 -38.21265 -37.47359 -34.50909 -33.86199 -32.73684 -32.34627 -31.24991 -29.73871 -28.53277 -27.19987 -26.14969 -25.25370 -24.00243 -22.50895 -21.51730 -21.00511 -20.56035 -19.73541 -19.19418 -17.85849 -17.43287 -16.57114 -16.42668 -15.95510 -15.63480 -15.03018 -14.82488 -14.63799 -14.51298 -14.21436 -14.11289 -13.89750 -13.67696 -13.51291 -13.39001 -13.16582 -12.78295 -12.60531 -12.33326 -12.26946 -11.93584 -11.91684 -11.74476 -11.61656 -11.53257 -11.46740 -11.24947 -11.21295 -11.02814 -11.02656 -10.79935 -10.58540 -10.40267 -10.20431 -9.76715 -9.47991 -8.99271 -8.83396 -8.35479 -8.00248 -7.87789 -6.41142 -3.81833 2.63704 3.05599 3.20994 3.26402 3.31374 3.62890 3.90273 4.09907 4.19394 4.27144 4.34605 4.51135 4.66006 4.75418 4.80227 4.90790 4.93575 4.98982 5.06834 5.09160 5.18287 5.24046 5.25546 5.37877 5.43025 5.44637 5.50438 5.51028 5.54859 5.60295 5.71066 5.72233 5.85544 5.87768 5.94806 5.98521 6.05447 6.16126 6.20952 6.27323 6.44390 6.49802 6.60798 6.76284 7.21857 7.30511 7.47523 7.56174 8.06712 8.24531 8.62508 9.18836 9.54256 10.06530 10.76501 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.002553 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.958995 B =10963.586339 C =12700.947670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.075 0.925 4 C 0.037 3.963 5 N -0.493 5.493 6 C 0.038 3.962 7 C 0.440 3.560 8 O -0.577 6.577 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.032 3.968 19 C 0.141 3.859 20 H 0.105 0.895 21 N -0.722 5.722 22 C 0.524 3.476 23 O -0.524 6.524 24 C -0.123 4.123 25 H 0.102 0.898 26 C -0.110 4.110 27 C 0.033 3.967 28 N -0.521 5.521 29 C 0.015 3.985 30 C 0.046 3.954 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.123 0.877 41 H 0.036 0.964 42 H 0.396 0.604 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.028 0.972 50 H 0.053 0.947 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 19.171 10.007 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.091 4.091 5 N -0.217 5.217 6 C -0.094 4.094 7 C 0.226 3.774 8 O -0.461 6.461 9 N -0.199 5.199 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.096 4.096 19 C 0.035 3.965 20 H 0.123 0.877 21 N -0.373 5.373 22 C 0.309 3.691 23 O -0.399 6.399 24 C -0.145 4.145 25 H 0.120 0.880 26 C -0.149 4.149 27 C -0.094 4.094 28 N -0.245 5.245 29 C -0.133 4.133 30 C -0.082 4.082 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.054 0.946 42 H 0.230 0.770 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.667 17.266 10.814 24.533 hybrid contribution 2.367 1.397 -0.614 2.816 sum -11.300 18.663 10.200 24.084 Atomic orbital electron populations 1.21811 0.93860 1.02596 1.01428 1.22244 0.96884 0.98902 0.94732 0.90637 1.23030 0.98443 0.91495 0.96139 1.64557 1.20638 1.34429 1.02115 1.22111 0.91721 0.98361 0.97207 1.19734 0.83467 0.86569 0.87662 1.90472 1.73675 1.60774 1.21185 1.41840 1.20491 1.38464 1.19068 1.19657 1.02346 1.17564 1.03218 0.87948 1.25259 0.97960 0.98815 0.95903 1.69604 1.26812 1.44216 1.13748 0.85919 0.79006 0.80578 0.78734 1.19825 1.20985 1.19942 1.23834 0.94171 1.00790 0.90849 1.22119 0.97505 0.90856 0.85990 0.87724 1.45957 1.69147 1.15747 1.06448 1.20292 0.77278 0.88359 0.83152 1.90735 1.46904 1.20001 1.82226 1.22221 1.00732 0.95765 0.95766 0.87986 1.22516 1.02752 0.98464 0.91121 1.23337 0.93961 0.95453 0.96663 1.64742 1.41783 1.16016 1.01945 1.22532 1.00314 0.89104 1.01384 1.22845 0.96279 0.96018 0.93068 0.91773 0.92734 0.92496 0.93780 0.89996 0.93426 0.89061 0.77486 0.91837 0.85923 0.94568 0.77038 0.88436 0.90323 0.93593 0.89555 0.91261 0.91085 0.95329 0.92867 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.89 37.16 0.33 -0.97 16 2 C -0.11 -1.16 3.32 -89.26 -0.30 -1.45 16 3 H 0.08 0.67 7.75 -51.93 -0.40 0.26 16 4 C 0.04 0.47 6.36 -2.76 -0.02 0.45 16 5 N -0.49 -8.44 5.26 -231.89 -1.22 -9.66 16 6 C 0.04 0.69 5.52 -4.97 -0.03 0.66 16 7 C 0.44 10.55 7.49 -10.98 -0.08 10.47 16 8 O -0.58 -15.76 13.10 5.55 0.07 -15.69 16 9 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 14 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.03 0.56 4.99 -1.90 -0.01 0.56 16 19 C 0.14 1.93 2.97 -66.07 -0.20 1.74 16 20 H 0.10 1.69 7.27 -51.93 -0.38 1.31 16 21 N -0.72 -8.23 5.07 -52.01 -0.26 -8.50 16 22 C 0.52 6.95 6.94 -10.99 -0.08 6.87 16 23 O -0.52 -9.41 15.08 5.56 0.08 -9.33 16 24 C -0.12 -1.19 3.38 -90.42 -0.31 -1.50 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 26 C -0.11 -1.12 6.42 -24.78 -0.16 -1.27 16 27 C 0.03 0.28 6.56 -1.81 -0.01 0.26 16 28 N -0.52 -4.62 5.55 -238.60 -1.33 -5.95 16 29 C 0.02 0.10 9.40 60.06 0.56 0.66 16 30 C 0.05 0.38 6.32 -2.75 -0.02 0.36 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.51 7.57 -51.93 -0.39 0.11 16 35 H 0.08 0.95 7.68 -51.93 -0.40 0.56 16 36 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.12 2.78 5.97 -51.93 -0.31 2.47 16 41 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 42 H 0.40 3.25 8.39 -40.82 -0.34 2.90 16 43 H 0.10 1.24 6.89 -51.93 -0.36 0.88 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.33 7.96 -51.92 -0.41 -0.09 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.03 0.17 8.00 -51.93 -0.42 -0.25 16 50 H 0.05 0.34 7.73 -51.93 -0.40 -0.06 16 51 H 0.08 0.72 7.62 -51.93 -0.40 0.32 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -33.83 402.30 -10.16 -43.99 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.67 Total: 12.41 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -0.54 Total: 8.79 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -2.14 Total: -62.53 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.16 Total: -25.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.83 -10.16 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211026122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.893 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds