Wall clock time and date at job start Tue Mar 31 2020 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.27080 * 2 1 4 4 C 1.53995 * 110.30498 * 237.90926 * 2 1 3 5 5 N 1.47895 * 107.05520 * 242.20942 * 4 2 1 6 6 C 1.46902 * 110.99712 * 214.15660 * 5 4 2 7 7 C 1.50702 * 109.47027 * 170.00079 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46646 * 60.00463 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47259 * 300.00225 * 14 12 10 18 18 C 1.48527 * 105.82449 * 334.67096 * 5 4 2 19 19 C 1.54591 * 110.39096 * 122.14450 * 2 1 3 20 20 H 1.09005 * 110.72570 * 22.56007 * 19 2 1 21 21 N 1.46497 * 110.72641 * 259.45004 * 19 2 1 22 22 C 1.34778 * 120.00132 * 155.00044 * 21 19 2 23 23 O 1.21278 * 119.99800 * 0.02562 * 22 21 19 24 24 C 1.50698 * 120.00316 * 180.02562 * 22 21 19 25 25 H 1.09001 * 110.27170 * 300.70889 * 24 22 21 26 26 C 1.54592 * 110.31144 * 178.61188 * 24 22 21 27 27 C 1.55104 * 102.84546 * 219.18700 * 26 24 22 28 28 N 1.48530 * 103.28624 * 37.30647 * 27 26 24 29 29 C 1.46895 * 111.00206 * 200.33573 * 28 27 26 30 30 C 1.47906 * 105.81943 * 320.84810 * 28 27 26 31 31 H 1.08994 * 109.47301 * 180.63801 * 1 2 3 32 32 H 1.09006 * 109.46992 * 300.63463 * 1 2 3 33 33 H 1.08996 * 109.47239 * 60.63415 * 1 2 3 34 34 H 1.09003 * 109.91316 * 122.85590 * 4 2 1 35 35 H 1.08995 * 109.91803 * 1.56967 * 4 2 1 36 36 H 1.09004 * 109.47131 * 50.00323 * 6 5 4 37 37 H 1.09000 * 109.47732 * 290.00434 * 6 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 39 39 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 40 40 H 1.09004 * 110.66790 * 157.64063 * 18 5 4 41 41 H 1.09002 * 110.67104 * 280.77408 * 18 5 4 42 42 H 0.96997 * 119.99798 * 335.00569 * 21 19 2 43 43 H 1.08997 * 110.72729 * 337.49002 * 26 24 22 44 44 H 1.09005 * 110.72218 * 100.77008 * 26 24 22 45 45 H 1.09008 * 110.59174 * 278.87100 * 27 26 24 46 46 H 1.09002 * 110.68565 * 155.78643 * 27 26 24 47 47 H 1.09001 * 109.47259 * 177.39566 * 29 28 27 48 48 H 1.09005 * 109.46622 * 297.39536 * 29 28 27 49 49 H 1.09001 * 109.47508 * 57.39436 * 29 28 27 50 50 H 1.08996 * 109.91573 * 265.97478 * 30 28 27 51 51 H 1.09005 * 109.91723 * 144.68205 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0644 -0.7673 -1.2236 5 7 2.8332 -1.9216 -0.7099 6 6 3.9767 -2.2224 -1.5817 7 6 4.8699 -3.2321 -0.9081 8 8 4.5821 -3.6595 0.1899 9 7 5.9855 -3.6648 -1.5285 10 6 6.7952 -4.5876 -0.9182 11 1 6.5388 -4.9681 0.0596 12 6 7.9455 -5.0333 -1.5574 13 7 8.2577 -4.5700 -2.7469 14 14 9.0490 -6.2901 -0.7255 15 1 8.2775 -7.5326 -0.4678 16 1 10.2027 -6.5974 -1.6086 17 1 9.5444 -5.7391 0.5615 18 6 3.2881 -1.5326 0.6494 19 6 2.0687 -0.7710 1.2269 20 1 1.3206 -1.4691 1.6027 21 7 2.4845 0.1575 2.2811 22 6 2.5017 -0.2466 3.5667 23 8 2.1734 -1.3790 3.8509 24 6 2.9288 0.7086 4.6512 25 1 3.9465 1.0547 4.4703 26 6 2.8318 0.0271 6.0354 27 6 2.2902 1.1632 6.9419 28 7 1.3326 1.8771 6.0590 29 6 1.0783 3.2381 6.5497 30 6 1.9619 1.9051 4.7208 31 1 -0.3633 -1.0275 0.0114 32 1 -0.3633 0.5237 0.8843 33 1 -0.3633 0.5039 -0.8956 34 1 2.7147 -0.1204 -1.8125 35 1 1.2326 -1.1174 -1.8347 36 1 4.5396 -1.3084 -1.7710 37 1 3.6162 -2.6293 -2.5265 38 1 6.2156 -3.3233 -2.4067 39 1 9.0609 -4.8808 -3.1930 40 1 3.5090 -2.4160 1.2487 41 1 4.1581 -0.8784 0.5915 42 1 2.7473 1.0631 2.0537 43 1 2.1329 -0.8087 6.0057 44 1 3.8146 -0.3023 6.3728 45 1 3.0985 1.8268 7.2491 46 1 1.7780 0.7509 7.8113 47 1 0.4102 3.7541 5.8601 48 1 0.6153 3.1883 7.5353 49 1 2.0205 3.7818 6.6180 50 1 2.5131 2.8362 4.5891 51 1 1.1978 1.8105 3.9491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211026122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:47 Heat of formation + Delta-G solvation = -83.544412 kcal Electronic energy + Delta-G solvation = -30088.904735 eV Core-core repulsion = 26021.923949 eV Total energy + Delta-G solvation = -4066.980787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -41.57051 -40.68741 -39.53454 -38.72195 -36.12903 -35.49794 -33.77669 -33.30188 -33.14814 -30.63568 -29.69328 -28.47910 -26.84063 -26.73618 -25.41440 -23.54308 -22.29720 -22.09390 -21.59383 -21.09265 -20.62960 -19.89419 -18.37995 -17.81337 -17.62582 -17.13439 -16.65578 -16.51754 -16.33104 -15.92032 -15.81302 -15.42212 -15.29253 -15.05665 -14.80781 -14.66986 -14.50774 -14.16293 -14.01450 -13.69564 -13.53568 -13.29426 -13.17869 -13.01010 -12.94284 -12.86764 -12.57043 -12.47686 -12.45756 -12.42052 -12.17329 -12.13722 -12.11698 -11.85092 -11.80662 -11.66963 -11.49725 -10.87341 -10.29079 -10.07934 -9.97608 -9.40852 -9.32791 -8.49313 -5.97956 1.36709 1.38699 1.49677 1.58650 2.01313 2.05501 2.26716 2.88791 3.03978 3.17209 3.31301 3.43697 3.55376 3.60505 3.68484 3.88648 3.94656 4.18869 4.25554 4.26782 4.30788 4.34067 4.36277 4.45809 4.52126 4.53065 4.55203 4.57829 4.65172 4.70089 4.81740 4.86717 4.95582 4.97127 4.97651 5.05275 5.07100 5.10450 5.20754 5.24152 5.37109 5.38175 5.49518 5.82815 5.84530 5.94874 6.05975 6.11512 6.52384 6.58391 7.10496 7.25331 7.52429 8.09833 8.67816 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.002553 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.958995 B =10963.586339 C =12700.947670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.109 0.891 4 C 0.036 3.964 5 N -0.516 5.516 6 C 0.050 3.950 7 C 0.434 3.566 8 O -0.617 6.617 9 N -0.571 5.571 10 C -0.334 4.334 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.918 5.918 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.267 1.267 17 H -0.273 1.273 18 C 0.038 3.962 19 C 0.149 3.851 20 H 0.073 0.927 21 N -0.706 5.706 22 C 0.517 3.483 23 O -0.582 6.582 24 C -0.117 4.117 25 H 0.125 0.875 26 C -0.116 4.116 27 C 0.041 3.959 28 N -0.545 5.545 29 C 0.016 3.984 30 C 0.053 3.947 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.416 0.584 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.040 0.960 50 H 0.081 0.919 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 22.408 9.097 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.127 0.873 4 C -0.091 4.091 5 N -0.241 5.241 6 C -0.081 4.081 7 C 0.222 3.778 8 O -0.503 6.503 9 N -0.208 5.208 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.211 4.211 13 N -0.559 5.559 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.191 1.191 17 H -0.198 1.198 18 C -0.091 4.091 19 C 0.043 3.957 20 H 0.091 0.909 21 N -0.358 5.358 22 C 0.305 3.695 23 O -0.461 6.461 24 C -0.138 4.138 25 H 0.143 0.857 26 C -0.155 4.155 27 C -0.086 4.086 28 N -0.270 5.270 29 C -0.132 4.132 30 C -0.076 4.076 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.059 0.941 50 H 0.099 0.901 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.709 20.572 9.864 26.617 hybrid contribution 2.331 0.366 -0.316 2.381 sum -11.377 20.938 9.548 25.671 Atomic orbital electron populations 1.21785 0.92575 1.01954 1.02965 1.22234 0.97800 0.99646 0.91625 0.87299 1.23186 0.98486 0.90347 0.97076 1.64473 1.20308 1.37548 1.01760 1.22013 0.91378 0.97495 0.97209 1.20849 0.83231 0.86597 0.87142 1.90488 1.74493 1.62214 1.23135 1.41897 1.21043 1.38574 1.19305 1.19575 1.04122 1.19621 1.03010 0.90732 1.26010 0.98523 1.00135 0.96444 1.69656 1.27276 1.44667 1.14284 0.85022 0.77493 0.77999 0.78016 1.19908 1.19111 1.19815 1.23494 0.95868 0.98617 0.91086 1.21813 0.95025 0.91246 0.87621 0.90889 1.45805 1.68218 1.16232 1.05509 1.21050 0.76100 0.88140 0.84256 1.90718 1.49506 1.22693 1.83151 1.22266 1.02340 0.95460 0.93779 0.85691 1.22491 1.02223 0.98344 0.92393 1.23278 0.94390 0.94847 0.96086 1.64720 1.42287 1.17618 1.02350 1.22571 1.01076 0.87915 1.01662 1.22829 0.95904 0.96026 0.92795 0.93568 0.92136 0.89989 0.91519 0.88681 0.90829 0.86894 0.76910 0.91203 0.91998 0.94848 0.74627 0.91887 0.89890 0.91711 0.89554 0.90618 0.90775 0.94141 0.90061 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.89 71.98 0.64 -1.53 16 2 C -0.09 -1.75 3.32 -9.91 -0.03 -1.78 16 3 H 0.11 1.38 7.75 -2.39 -0.02 1.36 16 4 C 0.04 0.81 6.36 86.45 0.55 1.36 16 5 N -0.52 -17.49 5.26 -887.57 -4.67 -22.16 16 6 C 0.05 1.79 5.52 85.56 0.47 2.27 16 7 C 0.43 21.50 7.49 87.66 0.66 22.16 16 8 O -0.62 -35.84 13.10 -3.07 -0.04 -35.88 16 9 N -0.57 -30.07 5.29 -306.98 -1.62 -31.69 16 10 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 11 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 13 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 14 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.04 1.41 4.99 86.65 0.43 1.84 16 19 C 0.15 4.14 2.97 46.20 0.14 4.27 16 20 H 0.07 2.52 7.27 -2.38 -0.02 2.50 16 21 N -0.71 -15.70 5.07 -436.84 -2.21 -17.92 16 22 C 0.52 14.14 6.94 87.66 0.61 14.74 16 23 O -0.58 -22.68 15.08 -3.02 -0.05 -22.73 16 24 C -0.12 -2.17 3.38 -10.66 -0.04 -2.21 16 25 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 26 C -0.12 -2.40 6.42 31.86 0.20 -2.20 16 27 C 0.04 0.64 6.56 86.71 0.57 1.21 16 28 N -0.55 -8.76 5.55 -908.79 -5.05 -13.81 16 29 C 0.02 0.17 9.40 127.69 1.20 1.37 16 30 C 0.05 0.74 6.32 86.45 0.55 1.29 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.23 7.57 -2.39 -0.02 1.21 16 35 H 0.09 1.90 7.68 -2.39 -0.02 1.88 16 36 H 0.07 2.26 7.81 -2.38 -0.02 2.24 16 37 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 39 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.06 3.05 5.97 -2.38 -0.01 3.04 16 41 H 0.03 1.20 8.02 -2.39 -0.02 1.18 16 42 H 0.42 5.78 8.39 -92.71 -0.78 5.00 16 43 H 0.06 1.75 6.89 -2.39 -0.02 1.74 16 44 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.06 0.76 7.96 -2.38 -0.02 0.74 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.04 0.33 8.00 -2.39 -0.02 0.32 16 50 H 0.08 0.71 7.73 -2.39 -0.02 0.69 16 51 H 0.08 1.19 7.62 -2.38 -0.02 1.17 16 Total: -1.00 -79.97 402.30 -4.67 -84.65 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.57 Total: 39.31 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 7.23 Total: 23.97 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -13.27 Total: -135.30 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -0.09 Total: -58.61 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -79.97 -4.67 -84.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211026122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.101 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds