Wall clock time and date at job start Tue Mar 31 2020 22:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 N 1.46506 * 109.46931 * 125.00158 * 3 2 1 5 5 C 1.34771 * 119.99515 * 180.02562 * 4 3 2 6 6 O 1.21583 * 120.00543 * 0.26795 * 5 4 3 7 7 N 1.34784 * 119.99547 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47078 * 300.00178 * 8 7 5 10 10 C 1.53002 * 109.47216 * 59.99659 * 8 7 5 11 11 C 1.50697 * 109.47276 * 180.02562 * 8 7 5 12 12 O 1.21281 * 120.00365 * 145.00129 * 11 8 7 13 13 N 1.34774 * 119.99797 * 324.99776 * 11 8 7 14 14 C 1.46497 * 120.00133 * 180.02562 * 13 11 8 15 15 H 1.09001 * 110.64352 * 36.68697 * 14 13 11 16 16 C 1.54322 * 110.71854 * 273.54840 * 14 13 11 17 17 N 1.47028 * 107.27171 * 219.44282 * 16 14 13 18 18 C 1.36932 * 125.65057 * 178.90324 * 17 16 14 19 19 H 1.07998 * 120.00353 * 180.02562 * 18 17 16 20 20 C 1.38816 * 119.99976 * 0.02649 * 18 17 16 21 21 N 1.31615 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47100 * 119.99691 * 22 20 18 25 25 H 1.48497 * 109.47306 * 240.00315 * 22 20 18 26 26 C 1.47430 * 108.70187 * 358.93951 * 17 16 14 27 27 C 1.54909 * 104.83120 * 24.13048 * 26 17 16 28 28 H 1.08999 * 111.00673 * 81.06380 * 27 26 17 29 29 C 1.52998 * 111.00243 * 204.91772 * 27 26 17 30 30 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47258 * 4.99651 * 3 2 1 34 34 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 35 35 H 0.96999 * 120.00076 * 359.97438 * 4 3 2 36 36 H 0.96999 * 120.00044 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.47453 * 59.99899 * 9 8 7 38 38 H 1.09005 * 109.47378 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.47321 * 299.99647 * 9 8 7 40 40 H 1.09002 * 109.46768 * 59.99877 * 10 8 7 41 41 H 1.08996 * 109.47401 * 179.97438 * 10 8 7 42 42 H 1.08998 * 109.47251 * 300.00062 * 10 8 7 43 43 H 0.97004 * 120.00212 * 0.02562 * 13 11 8 44 44 H 1.09000 * 109.88675 * 338.85630 * 16 14 13 45 45 H 1.09003 * 109.88655 * 100.02754 * 16 14 13 46 46 H 0.97001 * 120.00005 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.36795 * 142.96519 * 26 17 16 48 48 H 1.08999 * 110.36361 * 265.18177 * 26 17 16 49 49 H 1.09000 * 109.47398 * 172.19520 * 29 27 26 50 50 H 1.09000 * 109.47551 * 292.19365 * 29 27 26 51 51 H 1.09001 * 109.47349 * 52.19613 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1315 5 6 3.7784 2.4088 1.3334 6 8 3.7106 3.3603 0.5796 7 7 4.6339 2.4336 2.3747 8 6 5.4871 3.6041 2.5940 9 6 6.3844 3.8171 1.3731 10 6 4.6116 4.8410 2.8053 11 6 6.3437 3.3800 3.8134 12 8 7.4743 3.8175 3.8490 13 7 5.8534 2.6935 4.8644 14 6 6.6858 2.4761 6.0501 15 1 7.3076 3.3491 6.2485 16 6 7.5562 1.2129 5.8819 17 7 7.5826 0.5248 7.1810 18 6 8.2306 -0.6516 7.4480 19 1 8.1890 -1.0780 8.4393 20 6 8.9409 -1.2960 6.4445 21 7 8.9911 -0.7766 5.2362 22 14 9.8254 -2.9005 6.8089 23 1 9.6147 -3.2697 8.2317 24 1 9.2858 -3.9728 5.9347 25 1 11.2782 -2.7348 6.5498 26 6 6.7952 1.3108 8.1483 27 6 5.8075 2.1315 7.2819 28 1 4.9475 1.5278 6.9919 29 6 5.3629 3.4011 8.0108 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6214 1.4025 -0.9314 35 1 3.0447 0.5746 1.7356 36 1 4.6847 1.6764 2.9788 37 1 5.7652 3.9791 0.4908 38 1 7.0190 4.6883 1.5361 39 1 7.0082 2.9360 1.2225 40 1 3.9723 4.6893 3.6750 41 1 5.2464 5.7118 2.9689 42 1 3.9924 5.0030 1.9230 43 1 4.9492 2.3433 4.8358 44 1 7.1202 0.5602 5.1256 45 1 8.5681 1.4958 5.5917 46 1 9.4878 -1.2267 4.5350 47 1 6.2500 0.6486 8.8208 48 1 7.4463 1.9751 8.7166 49 1 4.7827 4.0257 7.3316 50 1 4.7489 3.1308 8.8698 51 1 6.2404 3.9514 8.3502 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211358516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:33 Heat of formation + Delta-G solvation = -15.135446 kcal Electronic energy + Delta-G solvation = -30752.634242 eV Core-core repulsion = 26688.619890 eV Total energy + Delta-G solvation = -4064.014351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78794 -39.45777 -37.75423 -36.40643 -35.14880 -33.98819 -33.24195 -32.62151 -31.00801 -30.41411 -27.99362 -27.16056 -26.25739 -25.68993 -24.27285 -22.89271 -21.15551 -20.62847 -20.15945 -20.07686 -19.21789 -18.61777 -17.38922 -16.93190 -16.17983 -15.87486 -15.68543 -15.29234 -14.95393 -14.63941 -14.40198 -14.12092 -13.93713 -13.78499 -13.50800 -13.27038 -13.04828 -12.84782 -12.79671 -12.68840 -12.22456 -12.04183 -11.97774 -11.80994 -11.69486 -11.49676 -11.38503 -11.26982 -11.06200 -10.82816 -10.67681 -10.41710 -10.30458 -10.03045 -9.97439 -9.94547 -9.74933 -9.39788 -9.37819 -9.00936 -8.66813 -8.56805 -6.87119 -5.72596 -3.07830 1.67034 2.49925 2.97453 3.11821 3.30955 3.38002 3.43550 3.46191 4.10721 4.43647 4.47038 4.67505 4.73819 4.95935 5.01922 5.12450 5.24044 5.26146 5.38570 5.41524 5.47058 5.51587 5.63469 5.70745 5.73153 5.84827 5.92644 5.93419 6.00106 6.08627 6.09999 6.13921 6.15604 6.22413 6.30031 6.36609 6.38146 6.44309 6.46598 6.58174 6.68696 6.73357 6.87446 7.49471 7.54127 7.75975 7.81929 7.86705 8.21682 8.41917 8.49831 9.18375 9.79062 10.43642 11.37943 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.003246 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.528867 B = 8622.642080 C = 9810.346273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C 0.167 3.833 4 N -0.745 5.745 5 C 0.711 3.289 6 O -0.585 6.585 7 N -0.739 5.739 8 C 0.182 3.818 9 C -0.150 4.150 10 C -0.158 4.158 11 C 0.516 3.484 12 O -0.520 6.520 13 N -0.710 5.710 14 C 0.119 3.881 15 H 0.088 0.912 16 C 0.175 3.825 17 N -0.606 5.606 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.141 3.859 27 C -0.113 4.113 28 H 0.076 0.924 29 C -0.138 4.138 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.398 0.602 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.393 0.607 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.252 0.748 47 H 0.042 0.958 48 H 0.022 0.978 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.252 6.124 -6.522 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.043 3.957 4 N -0.401 5.401 5 C 0.411 3.589 6 O -0.463 6.463 7 N -0.397 5.397 8 C 0.092 3.908 9 C -0.209 4.209 10 C -0.216 4.216 11 C 0.300 3.700 12 O -0.394 6.394 13 N -0.361 5.361 14 C 0.014 3.986 15 H 0.106 0.894 16 C 0.049 3.951 17 N -0.333 5.333 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.565 5.565 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.014 3.986 27 C -0.133 4.133 28 H 0.095 0.905 29 C -0.196 4.196 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.227 0.773 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.040 0.960 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.307 7.188 -7.293 19.256 hybrid contribution 0.141 -2.001 0.705 2.127 sum -16.167 5.187 -6.587 18.212 Atomic orbital electron populations 1.23972 0.95765 1.02382 0.98332 1.23051 0.96248 0.98308 1.01820 1.20230 0.91111 0.95240 0.89106 1.45129 1.42911 1.19616 1.32445 1.15816 0.78746 0.83012 0.81279 1.90859 1.71788 1.35547 1.48137 1.45324 1.42438 1.20956 1.30993 1.20417 0.89851 0.86241 0.94300 1.22067 0.98983 1.03115 0.96707 1.22193 0.99991 0.95765 1.03681 1.20335 0.87312 0.78490 0.83875 1.90748 1.17985 1.49635 1.81076 1.46020 1.17380 1.55690 1.17053 1.22552 0.92520 1.00888 0.82614 0.89414 1.21460 0.97167 0.88206 0.88279 1.44419 1.59037 1.23754 1.06053 1.19088 1.24406 0.96335 0.95999 0.90288 1.24823 1.00620 0.99170 0.95785 1.69976 1.45728 1.39385 1.01416 0.86056 0.79352 0.83071 0.77336 1.20509 1.21826 1.21723 1.21591 0.91609 0.93019 0.92384 1.22606 0.98158 0.96631 0.95881 0.90522 1.21704 1.01100 0.96971 0.99787 0.87905 0.88182 0.86597 0.91197 0.90750 0.76737 0.76634 0.89740 0.90741 0.92164 0.92403 0.91132 0.89036 0.77337 0.93249 0.93369 0.93794 0.93972 0.95989 0.93109 0.92749 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 14.32 29.01 0.42 -0.54 16 2 C -0.18 -1.15 9.63 -36.03 -0.35 -1.50 16 3 C 0.17 1.40 6.11 -5.19 -0.03 1.37 16 4 N -0.75 -6.95 5.55 -66.41 -0.37 -7.32 16 5 C 0.71 8.71 7.98 -86.92 -0.69 8.02 16 6 O -0.59 -8.75 12.55 5.29 0.07 -8.68 16 7 N -0.74 -8.70 4.86 -53.50 -0.26 -8.96 16 8 C 0.18 2.47 0.98 -132.97 -0.13 2.34 16 9 C -0.15 -2.19 7.93 37.16 0.29 -1.90 16 10 C -0.16 -1.91 8.38 37.16 0.31 -1.60 16 11 C 0.52 8.44 6.65 -10.99 -0.07 8.37 16 12 O -0.52 -10.69 15.82 5.56 0.09 -10.60 16 13 N -0.71 -10.68 4.83 -52.03 -0.25 -10.93 16 14 C 0.12 2.16 2.70 -66.10 -0.18 1.99 16 15 H 0.09 1.72 7.60 -51.93 -0.39 1.33 16 16 C 0.17 4.18 5.12 -3.06 -0.02 4.17 16 17 N -0.61 -15.07 3.39 -170.07 -0.58 -15.65 16 18 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 22 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.14 2.75 6.70 -2.53 -0.02 2.74 16 27 C -0.11 -1.78 3.25 -88.47 -0.29 -2.06 16 28 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 29 C -0.14 -1.74 9.31 37.16 0.35 -1.39 16 30 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.40 2.98 8.48 -40.82 -0.35 2.63 16 36 H 0.40 4.24 7.25 -40.82 -0.30 3.95 16 37 H 0.08 1.24 6.17 -51.93 -0.32 0.91 16 38 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.18 6.15 -51.93 -0.32 0.86 16 43 H 0.39 4.75 7.26 -40.82 -0.30 4.45 16 44 H 0.05 1.29 7.27 -51.93 -0.38 0.91 16 45 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.06 0.73 8.08 -51.93 -0.42 0.32 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -33.69 407.53 -8.84 -42.52 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.57 Total: 9.65 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.66 Total: 13.23 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.88 Total: -69.20 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.15 Total: -19.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.69 -8.84 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211358516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.389 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds