Wall clock time and date at job start Tue Mar 31 2020 21:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.90855 * 2 1 4 4 C 1.55114 * 111.16677 * 236.06759 * 2 1 3 5 5 N 1.47425 * 104.94559 * 205.13062 * 4 2 1 6 6 C 1.34769 * 125.64918 * 204.03815 * 5 4 2 7 7 O 1.21282 * 120.00001 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00073 * 359.95921 * 6 5 4 9 9 H 1.08995 * 110.33196 * 320.79489 * 8 6 5 10 10 C 1.54903 * 110.37494 * 83.17478 * 8 6 5 11 11 C 1.55137 * 101.65525 * 155.89751 * 10 8 6 12 12 C 1.54312 * 103.01851 * 324.34487 * 11 10 8 13 13 N 1.47440 * 107.23466 * 22.28336 * 12 11 10 14 14 C 1.46909 * 110.99808 * 123.25852 * 13 12 11 15 15 C 1.47026 * 108.70208 * 24.00308 * 5 4 2 16 16 C 1.54327 * 107.26895 * 358.94178 * 15 5 4 17 17 H 1.08998 * 110.71966 * 96.34754 * 16 15 5 18 18 N 1.46905 * 110.71909 * 219.44370 * 16 15 5 19 19 C 1.46901 * 110.99870 * 271.15938 * 18 16 15 20 20 C 1.50697 * 109.46943 * 180.02562 * 19 18 16 21 21 O 1.21292 * 120.00024 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99767 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99759 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00171 * 359.97438 * 23 22 20 25 25 C 1.38951 * 120.00074 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99768 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00310 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47100 * 90.00351 * 27 25 23 29 29 H 1.48501 * 109.47251 * 210.00371 * 27 25 23 30 30 H 1.48503 * 109.46881 * 330.00485 * 27 25 23 31 31 H 1.09001 * 109.47623 * 296.10159 * 1 2 3 32 32 H 1.09001 * 109.47120 * 56.10817 * 1 2 3 33 33 H 1.09005 * 109.46830 * 176.10368 * 1 2 3 34 34 H 1.09005 * 110.41890 * 86.20081 * 4 2 1 35 35 H 1.09004 * 110.29797 * 323.99957 * 4 2 1 36 36 H 1.09000 * 110.98778 * 273.98912 * 10 8 6 37 37 H 1.09001 * 110.99153 * 37.80445 * 10 8 6 38 38 H 1.09007 * 110.70755 * 205.95749 * 11 10 8 39 39 H 1.08999 * 110.70453 * 82.72685 * 11 10 8 40 40 H 1.08994 * 109.88845 * 262.87108 * 12 11 10 41 41 H 1.09003 * 109.88660 * 141.69029 * 12 11 10 42 42 H 1.08998 * 109.46855 * 299.15509 * 14 13 12 43 43 H 1.08990 * 109.47001 * 59.15804 * 14 13 12 44 44 H 1.09003 * 109.46661 * 179.16028 * 14 13 12 45 45 H 1.08993 * 109.88495 * 239.52829 * 15 5 4 46 46 H 1.08999 * 110.00879 * 118.42744 * 15 5 4 47 47 H 1.00901 * 110.99869 * 147.20650 * 18 16 15 48 48 H 1.09004 * 109.47031 * 299.99620 * 19 18 16 49 49 H 1.08995 * 109.47111 * 59.99900 * 19 18 16 50 50 H 0.96997 * 120.00713 * 359.97438 * 22 20 19 51 51 H 0.96999 * 119.99907 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2473 -0.7703 6 6 4.4516 -1.5676 -1.5888 7 8 5.5151 -1.9179 -1.1227 8 6 4.2725 -1.4908 -3.0831 9 1 3.2810 -1.8455 -3.3644 10 6 4.4894 -0.0392 -3.5784 11 6 4.8896 -0.2699 -5.0594 12 6 5.7127 -1.5737 -4.9980 13 7 5.3161 -2.2832 -3.7679 14 6 4.8338 -3.6369 -4.0732 15 6 3.4672 -1.2779 0.6991 16 6 2.0861 -0.8078 1.2023 17 1 1.4451 -1.6613 1.4231 18 7 2.2289 0.0522 2.3848 19 6 2.2280 -0.7450 3.6187 20 6 2.3753 0.1693 4.8075 21 8 2.4721 1.3671 4.6431 22 7 2.4006 -0.3442 6.0534 23 6 2.5351 0.4876 7.1349 24 1 2.6213 1.5541 6.9885 25 6 2.5607 -0.0416 8.4194 26 7 2.4563 -1.3395 8.5975 27 14 2.7447 1.0915 9.8930 28 1 1.4011 1.5156 10.3623 29 1 3.4465 0.3720 10.9862 30 1 3.5329 2.2879 9.5020 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8531 33 1 -0.3633 -1.0254 -0.0698 34 1 2.1643 -0.1733 -2.0837 35 1 1.4553 -1.6696 -1.4051 36 1 3.5680 0.5389 -3.5084 37 1 5.2953 0.4451 -3.0270 38 1 5.5007 0.5548 -5.4265 39 1 4.0045 -0.4018 -5.6817 40 1 6.7766 -1.3394 -4.9643 41 1 5.4943 -2.1914 -5.8692 42 1 3.9606 -3.5736 -4.7225 43 1 5.6209 -4.1981 -4.5766 44 1 4.5619 -4.1432 -3.1470 45 1 4.2433 -0.6055 1.0644 46 1 3.6625 -2.2926 1.0462 47 1 1.5069 0.7566 2.4089 48 1 1.2889 -1.2931 3.6965 49 1 3.0592 -1.4497 3.5966 50 1 2.3236 -1.3021 6.1850 51 1 2.4745 -1.7090 9.4942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214344215.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:23 Heat of formation + Delta-G solvation = -55.288923 kcal Electronic energy + Delta-G solvation = -29736.459564 eV Core-core repulsion = 25670.704027 eV Total energy + Delta-G solvation = -4065.755537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.64560 -39.19758 -38.17919 -37.42271 -34.74254 -33.80395 -32.61720 -32.42082 -31.20892 -30.40902 -28.56840 -26.65830 -26.33535 -25.99410 -24.22748 -22.78870 -21.68502 -21.41727 -20.36533 -19.36889 -19.05711 -17.87005 -17.63310 -16.84674 -16.35426 -15.76219 -15.71373 -15.13933 -14.88091 -14.81083 -14.56818 -14.31788 -14.12563 -13.84023 -13.71971 -13.60462 -13.47122 -13.16308 -13.06741 -12.82490 -12.65097 -12.37741 -12.19563 -12.14115 -11.87240 -11.66390 -11.63877 -11.56301 -11.53244 -11.26595 -11.20121 -11.16362 -11.01635 -10.68063 -10.38600 -10.21046 -9.82140 -9.50487 -8.70810 -8.65960 -8.48775 -8.14380 -7.95854 -6.41050 -3.81884 2.54284 2.68785 3.18481 3.27298 3.33480 3.64752 3.90487 4.04713 4.07444 4.18317 4.22173 4.28715 4.37152 4.49532 4.68495 4.72009 4.81059 4.96511 4.98634 5.05074 5.07409 5.11479 5.13476 5.19502 5.24194 5.27728 5.29445 5.39999 5.40243 5.52921 5.54602 5.57344 5.60869 5.70739 5.78620 5.82496 5.86469 5.94391 5.99116 6.06381 6.16809 6.28531 6.50185 6.63594 7.16459 7.41667 7.55949 7.59410 8.06639 8.17452 8.61456 9.18340 9.54630 10.05771 10.76631 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.001985 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.288618 B =14100.310880 C =14569.819922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.098 0.902 4 C 0.105 3.895 5 N -0.620 5.620 6 C 0.535 3.465 7 O -0.513 6.513 8 C 0.059 3.941 9 H 0.074 0.926 10 C -0.117 4.117 11 C -0.140 4.140 12 C 0.044 3.956 13 N -0.514 5.514 14 C 0.022 3.978 15 C 0.116 3.884 16 C 0.079 3.921 17 H 0.061 0.939 18 N -0.656 5.656 19 C 0.049 3.951 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.354 0.646 48 H 0.045 0.955 49 H 0.087 0.913 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 -3.387 -28.683 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.116 0.884 4 C -0.018 4.018 5 N -0.356 5.356 6 C 0.321 3.679 7 O -0.386 6.386 8 C -0.052 4.052 9 H 0.092 0.908 10 C -0.155 4.155 11 C -0.179 4.179 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.126 4.126 15 C -0.007 4.007 16 C -0.032 4.032 17 H 0.079 0.921 18 N -0.290 5.290 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.175 0.825 48 H 0.063 0.937 49 H 0.105 0.895 50 H 0.226 0.774 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.405 -2.961 -28.112 28.302 hybrid contribution -1.672 -0.460 0.504 1.806 sum -3.078 -3.421 -27.608 27.989 Atomic orbital electron populations 1.21742 0.93524 1.02208 1.02681 1.22579 0.96107 1.00412 0.93558 0.88380 1.22422 0.83611 0.98052 0.97758 1.48428 1.12260 1.67733 1.07164 1.19992 0.82796 0.77397 0.87695 1.90723 1.25617 1.45414 1.76832 1.22471 0.95126 0.95575 0.92071 0.90788 1.22667 1.02891 0.93961 0.96003 1.22795 1.00334 0.98461 0.96288 1.22866 1.00808 0.94012 0.90692 1.63047 1.36687 1.02174 1.21866 1.22560 0.98886 0.90141 1.01001 1.21995 0.98484 1.01596 0.78653 1.22588 0.94693 0.95214 0.90675 0.92114 1.59998 1.55019 1.14361 0.99614 1.21759 1.01006 0.95760 0.89821 1.19765 0.84662 0.89038 0.83918 1.90525 1.55339 1.15553 1.85333 1.41862 1.63669 1.09993 1.04438 1.19700 1.46904 0.92463 0.83795 0.87906 1.25274 0.97348 0.96319 0.99057 1.69614 1.50353 1.10791 1.23506 0.85850 0.78415 0.79730 0.80249 1.20449 1.20920 1.19386 0.91705 0.91991 0.92339 0.90645 0.91359 0.89947 0.89722 0.90037 0.91156 0.89984 0.92323 0.95469 0.90839 0.91341 0.89729 0.91722 0.82473 0.93674 0.89501 0.77445 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.32 37.16 0.35 -0.69 16 2 C -0.11 -0.96 3.06 -88.36 -0.27 -1.23 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 0.84 5.89 -2.42 -0.01 0.83 16 5 N -0.62 -7.22 3.33 -170.39 -0.57 -7.79 16 6 C 0.53 7.08 7.13 -10.99 -0.08 7.00 16 7 O -0.51 -9.17 16.92 5.56 0.09 -9.08 16 8 C 0.06 0.57 2.03 -67.34 -0.14 0.43 16 9 H 0.07 0.57 7.32 -51.93 -0.38 0.19 16 10 C -0.12 -0.90 6.30 -24.60 -0.15 -1.06 16 11 C -0.14 -0.83 6.94 -24.91 -0.17 -1.01 16 12 C 0.04 0.32 6.90 -2.84 -0.02 0.30 16 13 N -0.51 -5.21 4.69 -232.99 -1.09 -6.30 16 14 C 0.02 0.18 9.13 60.07 0.55 0.73 16 15 C 0.12 1.55 6.61 -3.06 -0.02 1.53 16 16 C 0.08 0.93 2.72 -65.87 -0.18 0.75 16 17 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 18 N -0.66 -10.12 5.93 -106.05 -0.63 -10.75 16 19 C 0.05 0.85 6.03 -4.98 -0.03 0.82 16 20 C 0.44 10.35 7.82 -10.99 -0.09 10.26 16 21 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 22 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 23 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 24 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 27 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.08 0.47 6.58 -51.93 -0.34 0.13 16 35 H 0.07 0.46 7.99 -51.93 -0.41 0.05 16 36 H 0.08 0.48 7.20 -51.93 -0.37 0.11 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.35 7.58 -51.93 -0.39 -0.05 16 42 H 0.03 0.18 8.09 -51.93 -0.42 -0.24 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.35 5.50 8.16 -39.29 -0.32 5.18 16 48 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 49 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 50 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 51 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 408.60 15.07 6.16 6.16 Total: -1.00 -34.55 408.60 -9.60 -44.15 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.78 Total: 10.76 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -0.51 Total: 10.64 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -1.62 Total: -63.12 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.18 Total: -24.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.55 -9.60 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214344215.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.141 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds