Wall clock time and date at job start Tue Mar 31 2020 21:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.90855 * 2 1 4 4 C 1.55114 * 111.16677 * 236.06759 * 2 1 3 5 5 N 1.47425 * 104.94559 * 205.13062 * 4 2 1 6 6 C 1.34769 * 125.64918 * 204.03815 * 5 4 2 7 7 O 1.21282 * 120.00001 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00073 * 359.95921 * 6 5 4 9 9 H 1.08995 * 110.33196 * 320.79489 * 8 6 5 10 10 C 1.54903 * 110.37494 * 83.17478 * 8 6 5 11 11 C 1.55137 * 101.65525 * 155.89751 * 10 8 6 12 12 C 1.54312 * 103.01851 * 324.34487 * 11 10 8 13 13 N 1.47440 * 107.23466 * 22.28336 * 12 11 10 14 14 C 1.46909 * 110.99808 * 123.25852 * 13 12 11 15 15 C 1.47026 * 108.70208 * 24.00308 * 5 4 2 16 16 C 1.54327 * 107.26895 * 358.94178 * 15 5 4 17 17 H 1.08998 * 110.71966 * 96.34754 * 16 15 5 18 18 N 1.46905 * 110.71909 * 219.44370 * 16 15 5 19 19 C 1.46901 * 110.99870 * 271.15938 * 18 16 15 20 20 C 1.50697 * 109.46943 * 180.02562 * 19 18 16 21 21 O 1.21292 * 120.00024 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99767 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99759 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00171 * 359.97438 * 23 22 20 25 25 C 1.38951 * 120.00074 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99768 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00310 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47100 * 90.00351 * 27 25 23 29 29 H 1.48501 * 109.47251 * 210.00371 * 27 25 23 30 30 H 1.48503 * 109.46881 * 330.00485 * 27 25 23 31 31 H 1.09001 * 109.47623 * 296.10159 * 1 2 3 32 32 H 1.09001 * 109.47120 * 56.10817 * 1 2 3 33 33 H 1.09005 * 109.46830 * 176.10368 * 1 2 3 34 34 H 1.09005 * 110.41890 * 86.20081 * 4 2 1 35 35 H 1.09004 * 110.29797 * 323.99957 * 4 2 1 36 36 H 1.09000 * 110.98778 * 273.98912 * 10 8 6 37 37 H 1.09001 * 110.99153 * 37.80445 * 10 8 6 38 38 H 1.09007 * 110.70755 * 205.95749 * 11 10 8 39 39 H 1.08999 * 110.70453 * 82.72685 * 11 10 8 40 40 H 1.08994 * 109.88845 * 262.87108 * 12 11 10 41 41 H 1.09003 * 109.88660 * 141.69029 * 12 11 10 42 42 H 1.08998 * 109.46855 * 299.15509 * 14 13 12 43 43 H 1.08990 * 109.47001 * 59.15804 * 14 13 12 44 44 H 1.09003 * 109.46661 * 179.16028 * 14 13 12 45 45 H 1.08993 * 109.88495 * 239.52829 * 15 5 4 46 46 H 1.08999 * 110.00879 * 118.42744 * 15 5 4 47 47 H 1.00901 * 110.99869 * 147.20650 * 18 16 15 48 48 H 1.09004 * 109.47031 * 299.99620 * 19 18 16 49 49 H 1.08995 * 109.47111 * 59.99900 * 19 18 16 50 50 H 0.96997 * 120.00713 * 359.97438 * 22 20 19 51 51 H 0.96999 * 119.99907 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2473 -0.7703 6 6 4.4516 -1.5676 -1.5888 7 8 5.5151 -1.9179 -1.1227 8 6 4.2725 -1.4908 -3.0831 9 1 3.2810 -1.8455 -3.3644 10 6 4.4894 -0.0392 -3.5784 11 6 4.8896 -0.2699 -5.0594 12 6 5.7127 -1.5737 -4.9980 13 7 5.3161 -2.2832 -3.7679 14 6 4.8338 -3.6369 -4.0732 15 6 3.4672 -1.2779 0.6991 16 6 2.0861 -0.8078 1.2023 17 1 1.4451 -1.6613 1.4231 18 7 2.2289 0.0522 2.3848 19 6 2.2280 -0.7450 3.6187 20 6 2.3753 0.1693 4.8075 21 8 2.4721 1.3671 4.6431 22 7 2.4006 -0.3442 6.0534 23 6 2.5351 0.4876 7.1349 24 1 2.6213 1.5541 6.9885 25 6 2.5607 -0.0416 8.4194 26 7 2.4563 -1.3395 8.5975 27 14 2.7447 1.0915 9.8930 28 1 1.4011 1.5156 10.3623 29 1 3.4465 0.3720 10.9862 30 1 3.5329 2.2879 9.5020 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8531 33 1 -0.3633 -1.0254 -0.0698 34 1 2.1643 -0.1733 -2.0837 35 1 1.4553 -1.6696 -1.4051 36 1 3.5680 0.5389 -3.5084 37 1 5.2953 0.4451 -3.0270 38 1 5.5007 0.5548 -5.4265 39 1 4.0045 -0.4018 -5.6817 40 1 6.7766 -1.3394 -4.9643 41 1 5.4943 -2.1914 -5.8692 42 1 3.9606 -3.5736 -4.7225 43 1 5.6209 -4.1981 -4.5766 44 1 4.5619 -4.1432 -3.1470 45 1 4.2433 -0.6055 1.0644 46 1 3.6625 -2.2926 1.0462 47 1 1.5069 0.7566 2.4089 48 1 1.2889 -1.2931 3.6965 49 1 3.0592 -1.4497 3.5966 50 1 2.3236 -1.3021 6.1850 51 1 2.4745 -1.7090 9.4942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214344215.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:22 Heat of formation + Delta-G solvation = -82.729215 kcal Electronic energy + Delta-G solvation = -29737.649464 eV Core-core repulsion = 25670.704027 eV Total energy + Delta-G solvation = -4066.945437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.52712 -40.30775 -39.68367 -38.46409 -36.22454 -35.57784 -33.52133 -33.21777 -33.04760 -31.22485 -29.61263 -27.84522 -27.33660 -26.64215 -25.93115 -23.71890 -22.44671 -22.02538 -21.34555 -20.97038 -20.11611 -19.86078 -18.51312 -17.92395 -17.50402 -16.95606 -16.64180 -16.52777 -16.32923 -16.03079 -15.63484 -15.58639 -15.25598 -14.91881 -14.77370 -14.67363 -14.29102 -14.04493 -13.99147 -13.77755 -13.57801 -13.51230 -13.35966 -13.28569 -13.05869 -12.92069 -12.73882 -12.49907 -12.43116 -12.32457 -12.21361 -12.13954 -12.02285 -11.95825 -11.67993 -11.51692 -11.49525 -10.83899 -10.36616 -10.02994 -9.69405 -9.43276 -9.28972 -8.47729 -5.96601 1.37176 1.41016 1.54000 1.58087 1.79544 2.03300 2.28276 2.85919 3.02963 3.19437 3.30875 3.43842 3.48930 3.61215 3.67408 3.95017 3.96059 4.07050 4.15693 4.18173 4.27533 4.32117 4.40523 4.42988 4.45615 4.50482 4.54504 4.56053 4.57777 4.73659 4.74953 4.86064 4.87549 4.91674 4.93878 4.96062 5.02037 5.05927 5.21010 5.25364 5.28412 5.39856 5.42476 5.85531 5.87996 6.05864 6.07603 6.36404 6.53100 6.58363 7.11138 7.19262 7.54525 8.09441 8.69635 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.001985 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.288618 B =14100.310880 C =14569.819922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.105 3.895 5 N -0.618 5.618 6 C 0.526 3.474 7 O -0.575 6.575 8 C 0.066 3.934 9 H 0.103 0.897 10 C -0.117 4.117 11 C -0.130 4.130 12 C 0.041 3.959 13 N -0.550 5.550 14 C 0.025 3.975 15 C 0.116 3.884 16 C 0.084 3.916 17 H 0.079 0.921 18 N -0.672 5.672 19 C 0.065 3.935 20 C 0.438 3.562 21 O -0.622 6.622 22 N -0.573 5.573 23 C -0.333 4.333 24 H 0.079 0.921 25 C -0.015 4.015 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.268 1.268 29 H -0.272 1.272 30 H -0.274 1.274 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.354 0.646 48 H 0.075 0.925 49 H 0.095 0.905 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -3.583 -30.941 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.017 4.017 5 N -0.352 5.352 6 C 0.315 3.685 7 O -0.453 6.453 8 C -0.045 4.045 9 H 0.120 0.880 10 C -0.155 4.155 11 C -0.168 4.168 12 C -0.086 4.086 13 N -0.275 5.275 14 C -0.123 4.123 15 C -0.008 4.008 16 C -0.026 4.026 17 H 0.097 0.903 18 N -0.306 5.306 19 C -0.067 4.067 20 C 0.226 3.774 21 O -0.509 6.509 22 N -0.210 5.210 23 C -0.463 4.463 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.561 5.561 27 Si 0.818 3.182 28 H -0.194 1.194 29 H -0.196 1.196 30 H -0.199 1.199 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.175 0.825 48 H 0.092 0.908 49 H 0.113 0.887 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.693 -3.172 -30.403 30.790 hybrid contribution -0.928 -0.408 1.180 1.556 sum -4.621 -3.579 -29.222 29.801 Atomic orbital electron populations 1.21719 0.91524 1.03316 1.03035 1.22550 0.97552 0.99400 0.92293 0.89560 1.22712 0.81580 0.99332 0.98085 1.48527 1.13602 1.66876 1.06206 1.20892 0.82035 0.76056 0.89523 1.90684 1.28101 1.48365 1.78126 1.22483 0.96285 0.96823 0.88949 0.87987 1.22703 1.03166 0.92802 0.96835 1.22786 1.01088 0.97758 0.95174 1.22901 1.00377 0.95031 0.90267 1.62912 1.37773 1.03270 1.23545 1.22534 0.99981 0.89253 1.00531 1.21847 0.98547 1.00092 0.80340 1.22618 0.93968 0.95803 0.90214 0.90294 1.59901 1.55594 1.15136 0.99974 1.21589 1.02715 0.94521 0.87924 1.20829 0.82396 0.89377 0.84840 1.90491 1.56539 1.17737 1.86092 1.41940 1.64379 1.09922 1.04799 1.19667 1.49229 0.91957 0.85451 0.90270 1.26069 0.96359 0.97881 1.01116 1.69676 1.50113 1.11850 1.24471 0.84913 0.78706 0.77687 0.76942 1.19361 1.19640 1.19885 0.92900 0.89896 0.91081 0.87878 0.88806 0.87433 0.92538 0.89194 0.88760 0.91388 0.90412 0.93070 0.90421 0.93192 0.93468 0.92747 0.82506 0.90766 0.88730 0.76992 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.32 71.98 0.67 -0.85 16 2 C -0.10 -1.54 3.06 -9.33 -0.03 -1.57 16 3 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.10 1.34 5.89 86.93 0.51 1.85 16 5 N -0.62 -13.97 3.33 -811.38 -2.70 -16.67 16 6 C 0.53 14.02 7.13 87.66 0.63 14.65 16 7 O -0.57 -21.84 16.92 -3.04 -0.05 -21.89 16 8 C 0.07 1.15 2.03 44.64 0.09 1.24 16 9 H 0.10 1.19 7.32 -2.39 -0.02 1.17 16 10 C -0.12 -1.56 6.30 31.98 0.20 -1.36 16 11 C -0.13 -1.16 6.94 31.77 0.22 -0.94 16 12 C 0.04 0.54 6.90 86.64 0.60 1.14 16 13 N -0.55 -10.67 4.69 -891.03 -4.18 -14.85 16 14 C 0.02 0.38 9.13 127.69 1.17 1.54 16 15 C 0.12 3.17 6.61 86.73 0.57 3.75 16 16 C 0.08 1.89 2.72 46.10 0.13 2.01 16 17 H 0.08 1.54 7.75 -2.39 -0.02 1.52 16 18 N -0.67 -20.65 5.93 -489.43 -2.90 -23.55 16 19 C 0.06 2.23 6.03 85.56 0.52 2.74 16 20 C 0.44 21.03 7.82 87.66 0.69 21.72 16 21 O -0.62 -34.68 15.78 -3.07 -0.05 -34.73 16 22 N -0.57 -29.83 5.29 -306.99 -1.62 -31.45 16 23 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 24 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 25 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 26 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 27 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.63 8.08 -2.38 -0.02 0.61 16 34 H 0.10 0.81 6.58 -2.38 -0.02 0.79 16 35 H 0.09 0.82 7.99 -2.39 -0.02 0.80 16 36 H 0.11 0.86 7.20 -2.39 -0.02 0.84 16 37 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 38 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.71 7.58 -2.39 -0.02 0.69 16 42 H 0.05 0.51 8.09 -2.39 -0.02 0.49 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.35 10.92 8.16 -89.69 -0.73 10.19 16 48 H 0.07 2.14 8.08 -2.39 -0.02 2.13 16 49 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 50 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 51 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -79.83 408.60 -2.49 -82.32 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.53 Total: 38.06 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 7.24 Total: 27.24 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -11.12 Total: -136.51 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.10 Total: -56.62 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -79.83 -2.49 -82.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214344215.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.409 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds