Wall clock time and date at job start Tue Mar 31 2020 21:59:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 110.39270 * 2 1
4 4 C 1.54389 * 110.34087 * 237.76605 * 2 1 3
5 5 N 1.48148 * 104.61767 * 264.99557 * 4 2 1
6 6 C 1.34781 * 127.83488 * 140.40010 * 5 4 2
7 7 O 1.21275 * 119.99866 * 180.02562 * 6 5 4
8 8 C 1.50705 * 119.99938 * 0.02562 * 6 5 4
9 9 H 1.08997 * 110.28453 * 59.30483 * 8 6 5
10 10 C 1.54260 * 110.32236 * 181.42830 * 8 6 5
11 11 C 1.54375 * 105.05822 * 118.89554 * 10 8 6
12 12 N 1.48567 * 104.59604 * 23.85603 * 11 10 8
13 13 C 1.46897 * 110.99831 * 200.95622 * 12 11 10
14 14 C 1.48720 * 104.28626 * 320.57074 * 12 11 10
15 15 C 1.48138 * 104.32427 * 320.41604 * 5 4 2
16 16 C 1.54290 * 110.34079 * 122.23331 * 2 1 3
17 17 H 1.08998 * 110.34110 * 359.89236 * 16 2 1
18 18 N 1.46900 * 110.34125 * 237.73937 * 16 2 1
19 19 C 1.46897 * 110.99822 * 154.99943 * 18 16 2
20 20 C 1.50703 * 109.47105 * 180.02562 * 19 18 16
21 21 O 1.21293 * 120.00034 * 359.97438 * 20 19 18
22 22 N 1.34771 * 120.00342 * 179.97438 * 20 19 18
23 23 C 1.37096 * 120.00379 * 179.97438 * 22 20 19
24 24 H 1.08001 * 120.00183 * 0.02562 * 23 22 20
25 25 C 1.38952 * 120.00380 * 180.02562 * 23 22 20
26 26 N 1.31408 * 120.00525 * 180.02562 * 25 23 22
27 27 Si 1.86800 * 119.99679 * 359.97438 * 25 23 22
28 28 H 1.48503 * 109.46845 * 90.00437 * 27 25 23
29 29 H 1.48503 * 109.47399 * 209.99926 * 27 25 23
30 30 H 1.48498 * 109.47295 * 330.00533 * 27 25 23
31 31 H 1.09000 * 109.47462 * 297.76976 * 1 2 3
32 32 H 1.09003 * 109.46712 * 57.76611 * 1 2 3
33 33 H 1.09001 * 109.47169 * 177.76541 * 1 2 3
34 34 H 1.08990 * 110.40990 * 23.78631 * 4 2 1
35 35 H 1.09006 * 110.40569 * 146.09653 * 4 2 1
36 36 H 1.08993 * 110.32564 * 237.79501 * 10 8 6
37 37 H 1.09001 * 110.32497 * 359.90543 * 10 8 6
38 38 H 1.09002 * 110.41030 * 142.63300 * 11 10 8
39 39 H 1.08996 * 110.42026 * 264.95915 * 11 10 8
40 40 H 1.08996 * 109.47042 * 59.87664 * 13 12 11
41 41 H 1.09003 * 109.46926 * 179.87156 * 13 12 11
42 42 H 1.08992 * 109.47667 * 299.87244 * 13 12 11
43 43 H 1.09005 * 110.38938 * 280.64591 * 14 12 11
44 44 H 1.08996 * 110.50910 * 158.14578 * 14 12 11
45 45 H 1.09001 * 110.41068 * 280.79840 * 15 5 4
46 46 H 1.09000 * 110.40470 * 158.36828 * 15 5 4
47 47 H 1.00902 * 110.99758 * 31.04489 * 18 16 2
48 48 H 1.08999 * 109.47455 * 60.00273 * 19 18 16
49 49 H 1.09004 * 109.46922 * 299.99538 * 19 18 16
50 50 H 0.97000 * 119.99962 * 0.02562 * 22 20 19
51 51 H 0.96995 * 120.00506 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9098 1.0217 0.0000
4 6 2.0666 -0.7721 -1.2245
5 7 2.3139 -2.1439 -0.7226
6 6 2.0770 -3.3106 -1.3544
7 8 2.3353 -4.3608 -0.8055
8 6 1.4912 -3.3102 -2.7429
9 1 2.1429 -2.7677 -3.4278
10 6 1.2808 -4.7566 -3.2361
11 6 -0.2387 -4.8804 -3.4794
12 7 -0.6960 -3.4854 -3.7081
13 6 -2.1392 -3.3583 -3.4655
14 6 0.0823 -2.6791 -2.7304
15 6 2.8801 -1.9422 0.6314
16 6 2.0663 -0.7716 1.2237
17 1 1.2397 -1.1490 1.8258
18 7 2.9332 0.0946 2.0338
19 6 2.9731 -0.3589 3.4305
20 6 3.8695 0.5522 4.2290
21 8 4.4213 1.4869 3.6877
22 7 4.0582 0.3283 5.5445
23 6 4.8741 1.1568 6.2708
24 1 5.3654 1.9891 5.7888
25 6 5.0690 0.9257 7.6270
26 7 5.8507 1.7200 8.3233
27 14 4.2187 -0.5135 8.4608
28 1 5.0892 -1.7143 8.3847
29 1 3.9606 -0.1788 9.8844
30 1 2.9307 -0.7917 7.7762
31 1 -0.3634 0.4788 0.9093
32 1 -0.3633 0.5482 -0.8693
33 1 -0.3633 -1.0269 -0.0401
34 1 1.3223 -0.7870 -2.0205
35 1 2.9938 -0.3229 -1.5806
36 1 1.8277 -4.9236 -4.1640
37 1 1.6027 -5.4669 -2.4745
38 1 -0.4340 -5.4935 -4.3593
39 1 -0.7306 -5.3049 -2.6044
40 1 -2.3603 -3.6360 -2.4349
41 1 -2.4471 -2.3269 -3.6378
42 1 -2.6812 -4.0173 -4.1436
43 1 -0.3599 -2.7563 -1.7370
44 1 0.1296 -1.6371 -3.0465
45 1 3.9354 -1.6771 0.5665
46 1 2.7493 -2.8400 1.2356
47 1 2.6387 1.0578 1.9746
48 1 3.3603 -1.3770 3.4711
49 1 1.9668 -0.3358 3.8489
50 1 3.6173 -0.4194 5.9773
51 1 5.9864 1.5589 9.2701
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001216754530.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:59:30
Heat of formation + Delta-G solvation = -47.472744 kcal
Electronic energy + Delta-G solvation = -29967.915575 eV
Core-core repulsion = 25902.498974 eV
Total energy + Delta-G solvation = -4065.416602 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.85213 -39.22898 -38.37208 -37.76179 -34.86551 -33.88456 -32.74889 -32.50893
-31.67526 -30.10776 -28.58813 -26.89936 -26.70325 -26.03533 -24.20507 -22.80814
-21.72861 -21.53836 -20.38390 -19.46924 -19.23029 -18.31456 -17.77044 -16.48952
-16.44017 -16.05391 -15.74215 -15.51687 -15.17399 -14.88692 -14.78238 -14.40552
-14.32939 -13.99029 -13.74294 -13.70790 -13.43670 -13.21006 -13.14658 -12.92585
-12.53299 -12.46310 -12.29161 -12.09755 -11.99840 -11.88070 -11.78704 -11.69964
-11.57592 -11.26751 -11.20750 -11.14051 -11.11591 -10.90738 -10.61100 -10.08148
-9.99403 -9.59458 -9.04464 -8.96461 -8.62810 -8.27573 -8.19597 -6.33019
-3.84614 2.34571 2.62213 3.01086 3.06182 3.14179 3.53849 3.70565
3.98417 4.08173 4.09075 4.10924 4.19035 4.27705 4.50123 4.59502
4.74561 4.78339 4.81560 4.88110 4.97051 5.02128 5.07846 5.09870
5.15410 5.18675 5.22985 5.26356 5.35246 5.41254 5.44190 5.47735
5.55051 5.58335 5.66082 5.67817 5.71187 5.72474 5.76190 5.83088
5.88796 5.92370 6.05212 6.29086 6.45578 7.01059 7.29831 7.47151
7.55723 7.89525 8.12048 8.57175 8.92660 9.40149 9.79631 10.79962
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.022047 B = 0.002094 C = 0.002041
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1269.733578 B =13370.024748 C =13712.599397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.110 4.110
3 H 0.099 0.901
4 C 0.103 3.897
5 N -0.619 5.619
6 C 0.539 3.461
7 O -0.539 6.539
8 C -0.110 4.110
9 H 0.107 0.893
10 C -0.117 4.117
11 C 0.031 3.969
12 N -0.514 5.514
13 C 0.012 3.988
14 C 0.043 3.957
15 C 0.112 3.888
16 C 0.077 3.923
17 H 0.058 0.942
18 N -0.658 5.658
19 C 0.046 3.954
20 C 0.450 3.550
21 O -0.565 6.565
22 N -0.590 5.590
23 C -0.305 4.305
24 H 0.120 0.880
25 C 0.041 3.959
26 N -0.880 5.880
27 Si 0.880 3.120
28 H -0.270 1.270
29 H -0.277 1.277
30 H -0.270 1.270
31 H 0.060 0.940
32 H 0.060 0.940
33 H 0.053 0.947
34 H 0.082 0.918
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.095 0.905
38 H 0.085 0.915
39 H 0.046 0.954
40 H 0.029 0.971
41 H 0.071 0.929
42 H 0.071 0.929
43 H 0.050 0.950
44 H 0.091 0.909
45 H 0.089 0.911
46 H 0.079 0.921
47 H 0.355 0.645
48 H 0.088 0.912
49 H 0.046 0.954
50 H 0.371 0.629
51 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.782 -10.519 -23.762 30.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.129 4.129
3 H 0.117 0.883
4 C -0.020 4.020
5 N -0.353 5.353
6 C 0.328 3.672
7 O -0.416 6.416
8 C -0.132 4.132
9 H 0.125 0.875
10 C -0.155 4.155
11 C -0.097 4.097
12 N -0.238 5.238
13 C -0.137 4.137
14 C -0.085 4.085
15 C -0.011 4.011
16 C -0.035 4.035
17 H 0.076 0.924
18 N -0.292 5.292
19 C -0.087 4.087
20 C 0.235 3.765
21 O -0.447 6.447
22 N -0.229 5.229
23 C -0.434 4.434
24 H 0.137 0.863
25 C -0.162 4.162
26 N -0.520 5.520
27 Si 0.706 3.294
28 H -0.196 1.196
29 H -0.202 1.202
30 H -0.196 1.196
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.072 0.928
34 H 0.101 0.899
35 H 0.098 0.902
36 H 0.097 0.903
37 H 0.113 0.887
38 H 0.103 0.897
39 H 0.065 0.935
40 H 0.048 0.952
41 H 0.090 0.910
42 H 0.090 0.910
43 H 0.068 0.932
44 H 0.109 0.891
45 H 0.107 0.893
46 H 0.097 0.903
47 H 0.176 0.824
48 H 0.106 0.894
49 H 0.064 0.936
50 H 0.203 0.797
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -15.535 -10.632 -24.393 30.813
hybrid contribution -1.635 -0.962 2.125 2.849
sum -17.171 -11.594 -22.269 30.416
Atomic orbital electron populations
1.21873 0.94159 1.01816 1.02322 1.22325 0.96139 1.00330 0.94156
0.88326 1.22602 1.01277 0.81435 0.96735 1.48901 1.62998 1.05525
1.17851 1.20083 0.77769 0.81998 0.87374 1.90692 1.52975 1.30456
1.67456 1.22013 0.97586 0.99525 0.94082 0.87499 1.22348 0.95598
0.95067 1.02511 1.23169 0.95280 0.90477 1.00757 1.65445 1.04639
1.06760 1.46979 1.22524 0.88515 1.02830 0.99804 1.23189 0.91701
0.98523 0.95053 1.22454 0.98568 0.97856 0.82176 1.22504 0.93472
0.93675 0.93817 0.92446 1.60101 1.54008 1.06487 1.08581 1.21794
0.98417 0.99778 0.88672 1.19659 0.86426 0.87887 0.82489 1.90566
1.51793 1.32532 1.69796 1.42208 1.44164 1.28361 1.08167 1.19427
1.22595 1.10032 0.91339 0.86250 1.25045 0.97168 0.97781 0.96174
1.69617 1.36563 1.37303 1.08539 0.86674 0.79745 0.82851 0.80114
1.19555 1.20174 1.19556 0.92141 0.92079 0.92771 0.89939 0.90216
0.90333 0.88655 0.89700 0.93547 0.95209 0.91028 0.91017 0.93183
0.89121 0.89320 0.90293 0.82353 0.89425 0.93600 0.79680 0.91587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.99 8.90 37.16 0.33 -0.66 16
2 C -0.11 -0.90 3.33 -89.22 -0.30 -1.19 16
3 H 0.10 0.81 7.52 -51.93 -0.39 0.42 16
4 C 0.10 0.78 6.32 -2.41 -0.02 0.76 16
5 N -0.62 -6.34 3.31 -169.31 -0.56 -6.90 16
6 C 0.54 6.12 7.13 -10.98 -0.08 6.04 16
7 O -0.54 -8.16 15.52 5.56 0.09 -8.07 16
8 C -0.11 -0.91 2.91 -90.39 -0.26 -1.17 16
9 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
10 C -0.12 -0.96 6.59 -25.35 -0.17 -1.13 16
11 C 0.03 0.23 6.49 -2.18 -0.01 0.21 16
12 N -0.51 -3.81 5.66 -238.09 -1.35 -5.16 16
13 C 0.01 0.07 9.53 60.06 0.57 0.64 16
14 C 0.04 0.31 4.93 -2.09 -0.01 0.30 16
15 C 0.11 1.33 6.75 -2.42 -0.02 1.31 16
16 C 0.08 0.83 3.05 -66.31 -0.20 0.63 16
17 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16
18 N -0.66 -9.24 5.92 -106.51 -0.63 -9.87 16
19 C 0.05 0.73 6.02 -4.98 -0.03 0.70 16
20 C 0.45 9.95 7.82 -10.99 -0.09 9.87 16
21 O -0.56 -14.78 15.78 5.55 0.09 -14.69 16
22 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16
23 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16
24 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16
25 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16
26 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16
27 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16
28 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
30 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16
31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.08 0.47 4.76 -51.93 -0.25 0.22 16
35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.10 0.97 6.46 -51.93 -0.34 0.63 16
38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.05 0.36 7.97 -51.93 -0.41 -0.05 16
40 H 0.03 0.18 7.98 -51.93 -0.41 -0.23 16
41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
43 H 0.05 0.41 7.62 -51.93 -0.40 0.01 16
44 H 0.09 0.53 6.58 -51.93 -0.34 0.18 16
45 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16
46 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16
47 H 0.36 5.07 7.75 -39.29 -0.30 4.76 16
48 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
49 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16
50 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16
51 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 400.06 15.07 6.03 6.03
Total: -1.00 -34.01 400.06 -9.35 -43.36
By element:
Atomic # 1 Polarization: 19.35 SS G_CDS: -8.49 Total: 10.86 kcal
Atomic # 6 Polarization: 9.14 SS G_CDS: -0.52 Total: 8.62 kcal
Atomic # 7 Polarization: -58.91 SS G_CDS: -1.82 Total: -60.73 kcal
Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.76 kcal
Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -34.01 -9.35 -43.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001216754530.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.117 kcal
(2) G-P(sol) polarization free energy of solvation -34.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds