Wall clock time and date at job start Tue Mar 31 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45770 * 2 1 4 4 C 1.53044 * 109.45919 * 240.04749 * 2 1 3 5 5 C 1.53198 * 109.31273 * 178.61272 * 4 2 1 6 6 N 1.46927 * 108.77454 * 54.63605 * 5 4 2 7 7 C 1.34773 * 120.63019 * 126.66968 * 6 5 4 8 8 O 1.21279 * 119.99555 * 174.17486 * 7 6 5 9 9 C 1.50694 * 119.99889 * 354.16693 * 7 6 5 10 10 N 1.46500 * 109.46798 * 180.02562 * 9 7 6 11 11 C 1.46391 * 119.32973 * 90.00507 * 10 9 7 12 12 C 1.53240 * 109.15299 * 209.03516 * 11 10 9 13 13 C 1.53233 * 108.56369 * 304.51924 * 12 11 10 14 14 N 1.46378 * 109.15635 * 55.47853 * 13 12 11 15 15 C 1.34134 * 119.33447 * 269.72840 * 10 9 7 16 16 O 1.21585 * 118.69243 * 359.43242 * 15 10 9 17 17 C 1.46927 * 118.73451 * 306.39117 * 6 5 4 18 18 H 1.08997 * 109.58696 * 293.81668 * 17 6 5 19 19 C 1.53007 * 109.58346 * 173.54229 * 17 6 5 20 20 N 1.46498 * 109.47144 * 181.66746 * 19 17 6 21 21 C 1.36936 * 120.00008 * 184.94710 * 20 19 17 22 22 H 1.07992 * 120.00184 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99770 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99626 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00240 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47339 * 89.99945 * 25 23 21 27 27 H 1.48499 * 109.47160 * 210.00170 * 25 23 21 28 28 H 1.48500 * 109.47200 * 330.00177 * 25 23 21 29 29 C 1.53034 * 109.46296 * 119.97848 * 2 1 3 30 30 H 1.08998 * 109.47113 * 300.02192 * 1 2 3 31 31 H 1.08997 * 109.47190 * 60.02572 * 1 2 3 32 32 H 1.09003 * 109.46631 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49775 * 298.56356 * 4 2 1 34 34 H 1.08998 * 109.50005 * 58.62939 * 4 2 1 35 35 H 1.08999 * 109.58472 * 294.84681 * 5 4 2 36 36 H 1.08999 * 109.58296 * 174.42334 * 5 4 2 37 37 H 1.09001 * 109.47330 * 300.00237 * 9 7 6 38 38 H 1.08994 * 109.47317 * 60.00872 * 9 7 6 39 39 H 1.09006 * 109.51877 * 328.93808 * 11 10 9 40 40 H 1.08997 * 109.52107 * 89.06683 * 11 10 9 41 41 H 1.09007 * 109.61753 * 64.24078 * 12 11 10 42 42 H 1.09003 * 109.61796 * 184.60799 * 12 11 10 43 43 H 1.08999 * 109.52678 * 175.38578 * 13 12 11 44 44 H 1.09002 * 109.52180 * 295.51215 * 13 12 11 45 45 H 0.96998 * 119.33044 * 150.91562 * 14 13 12 46 46 H 1.08999 * 109.46743 * 301.66625 * 19 17 6 47 47 H 1.09001 * 109.47272 * 61.66643 * 19 17 6 48 48 H 0.97006 * 119.99601 * 4.95187 * 20 19 17 49 49 H 0.96999 * 119.99780 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.49738 * 61.43218 * 29 2 1 51 51 H 1.09001 * 109.52504 * 301.35233 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0004 7 6 4.9660 -2.2537 -0.0006 8 8 5.4476 -2.6368 1.0445 9 6 5.3716 -2.9014 -1.2994 10 7 6.3507 -3.9582 -1.0332 11 6 5.8827 -5.3214 -0.7769 12 6 6.8850 -6.0334 0.1378 13 6 8.2708 -5.9683 -0.5128 14 7 8.6092 -4.5702 -0.7835 15 6 7.6581 -3.6582 -1.0347 16 8 7.9940 -2.5134 -1.2687 17 6 3.5714 -0.6888 1.2640 18 1 3.9144 0.3406 1.3673 19 6 4.0942 -1.5234 2.4349 20 7 3.5655 -0.9869 3.6915 21 6 3.9785 -1.5110 4.8873 22 1 4.6936 -2.3201 4.9041 23 6 3.4771 -1.0030 6.0778 24 7 3.8737 -1.5071 7.2272 25 14 2.2397 0.3960 6.0488 26 1 0.8641 -0.1608 5.9958 27 1 2.3937 1.2187 7.2755 28 1 2.4775 1.2425 4.8520 29 6 2.0399 -0.7210 1.2499 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7554 -1.2387 34 1 1.6567 -0.2206 -2.1399 35 1 3.9143 0.3413 -1.3674 36 1 3.9416 -1.2840 -2.0988 37 1 4.4935 -3.3329 -1.7801 38 1 5.8143 -2.1527 -1.9562 39 1 4.9074 -5.2863 -0.2914 40 1 5.8010 -5.8617 -1.7200 41 1 6.9122 -5.5367 1.1077 42 1 6.5869 -7.0738 0.2676 43 1 9.0108 -6.3981 0.1624 44 1 8.2612 -6.5293 -1.4473 45 1 9.5403 -4.2982 -0.7843 46 1 3.7708 -2.5576 2.3168 47 1 5.1833 -1.4830 2.4523 48 1 2.9229 -0.2605 3.6763 49 1 3.5237 -1.1518 8.0592 50 1 1.6979 -1.7558 1.2379 51 1 1.6573 -0.2216 2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263994770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:22 Heat of formation + Delta-G solvation = -26.630241 kcal Electronic energy + Delta-G solvation = -31564.730515 eV Core-core repulsion = 27500.217712 eV Total energy + Delta-G solvation = -4064.512803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.00202 -40.07192 -37.61500 -36.49825 -35.27215 -34.64612 -33.89884 -32.06473 -31.16274 -30.17634 -28.97606 -27.60675 -25.82478 -25.55186 -23.49600 -23.37986 -22.49456 -21.02866 -20.43682 -19.37094 -18.82746 -17.71852 -17.55838 -17.29579 -16.84550 -15.91236 -15.68446 -15.40586 -14.90048 -14.60221 -14.41189 -14.23839 -14.17299 -13.96113 -13.88523 -13.59385 -13.53295 -13.42417 -13.12141 -12.65750 -12.52115 -12.34646 -12.00704 -11.93662 -11.73139 -11.58605 -11.53875 -11.47370 -11.23343 -11.00916 -10.85479 -10.73772 -10.48033 -10.23892 -10.15518 -10.14726 -9.46181 -9.29307 -9.17241 -8.81470 -8.44655 -8.36542 -7.03630 -5.63498 -2.96825 2.44288 2.82134 3.02938 3.26188 3.43615 3.45320 3.51241 3.66569 4.44594 4.48932 4.57835 4.65297 4.69603 4.72062 4.80109 4.83127 4.91776 5.08579 5.10651 5.16703 5.20359 5.24068 5.31300 5.38166 5.47559 5.48629 5.53036 5.64018 5.65182 5.67344 5.79062 5.82731 5.90445 5.92386 5.97539 6.07935 6.13148 6.15452 6.20346 6.41053 6.45916 6.66803 6.96044 7.03767 7.26304 7.58016 7.69290 8.15507 8.42633 8.53001 8.57016 9.36302 10.08411 10.29064 11.55781 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.004026 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.950791 B = 6953.076859 C = 9085.533499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.128 4.128 5 C 0.108 3.892 6 N -0.608 5.608 7 C 0.492 3.508 8 O -0.502 6.502 9 C 0.114 3.886 10 N -0.605 5.605 11 C 0.117 3.883 12 C -0.155 4.155 13 C 0.112 3.888 14 N -0.737 5.737 15 C 0.718 3.282 16 O -0.598 6.598 17 C 0.137 3.863 18 H 0.069 0.931 19 C 0.167 3.833 20 N -0.761 5.761 21 C -0.228 4.228 22 H 0.089 0.911 23 C -0.001 4.001 24 N -0.939 5.939 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.414 0.586 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.354 0.646 49 H 0.257 0.743 50 H 0.068 0.932 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -6.987 -25.801 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.015 4.015 6 N -0.344 5.344 7 C 0.277 3.723 8 O -0.376 6.376 9 C -0.014 4.014 10 N -0.341 5.341 11 C -0.006 4.006 12 C -0.194 4.194 13 C -0.013 4.013 14 N -0.394 5.394 15 C 0.419 3.581 16 O -0.476 6.476 17 C 0.034 3.966 18 H 0.087 0.913 19 C 0.041 3.959 20 N -0.409 5.409 21 C -0.358 4.358 22 H 0.107 0.893 23 C -0.196 4.196 24 N -0.588 5.588 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.205 1.205 29 C -0.160 4.160 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.251 0.749 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.187 0.813 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.095 -6.838 -25.206 26.117 hybrid contribution -0.732 1.065 0.231 1.313 sum -0.636 -5.773 -24.974 25.641 Atomic orbital electron populations 1.21810 0.95087 1.01825 1.01557 1.21159 0.95703 0.99620 0.94863 0.91129 1.21985 0.94872 1.01495 0.98275 1.21725 0.94454 0.99570 0.85761 1.48132 1.43494 1.35835 1.06923 1.21151 0.79075 0.80212 0.91849 1.90829 1.52532 1.62283 1.31936 1.21247 0.92758 0.91655 0.95714 1.46319 1.03910 1.09111 1.74803 1.21561 0.98855 0.81420 0.98740 1.22201 0.94346 1.02313 1.00523 1.21505 0.97365 0.82451 0.99964 1.44867 1.09053 1.08912 1.76597 1.15312 0.80953 0.84311 0.77526 1.90945 1.80549 1.18944 1.57210 1.21586 0.93283 0.98086 0.83633 0.91305 1.21255 0.98324 0.93967 0.82358 1.42970 1.52995 1.42387 1.02522 1.19068 1.20397 1.14068 0.82280 0.89275 1.24650 1.00293 0.99470 0.95164 1.69706 1.47773 1.44791 0.96568 0.86567 0.82151 0.83277 0.76718 1.21226 1.21830 1.20478 1.22015 0.94977 1.01472 0.97543 0.92514 0.92911 0.92698 0.91418 0.90885 0.91218 0.90018 0.87872 0.86953 0.89860 0.91750 0.89438 0.88605 0.89903 0.91965 0.74895 0.95316 0.91849 0.81277 0.93285 0.91311 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.09 -1.03 2.68 -90.58 -0.24 -1.27 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.24 16 5 C 0.11 1.02 6.35 -3.71 -0.02 1.00 16 6 N -0.61 -8.51 2.97 -165.22 -0.49 -9.00 16 7 C 0.49 7.64 7.60 -10.99 -0.08 7.55 16 8 O -0.50 -10.18 11.99 5.56 0.07 -10.12 16 9 C 0.11 1.30 4.16 -5.20 -0.02 1.28 16 10 N -0.60 -7.41 2.30 -181.15 -0.42 -7.83 16 11 C 0.12 1.05 6.49 -3.98 -0.03 1.03 16 12 C -0.16 -1.31 6.20 -26.49 -0.16 -1.47 16 13 C 0.11 0.82 7.20 -3.99 -0.03 0.79 16 14 N -0.74 -8.01 5.58 -65.53 -0.37 -8.38 16 15 C 0.72 10.40 8.18 -88.06 -0.72 9.68 16 16 O -0.60 -10.96 16.49 5.29 0.09 -10.88 16 17 C 0.14 2.34 3.09 -67.60 -0.21 2.13 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.17 3.74 4.14 -4.04 -0.02 3.73 16 20 N -0.76 -19.61 5.19 -59.91 -0.31 -19.92 16 21 C -0.23 -6.95 10.47 -15.06 -0.16 -7.10 16 22 H 0.09 2.96 8.06 -52.49 -0.42 2.54 16 23 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 24 N -0.94 -30.90 13.97 55.49 0.78 -30.13 16 25 Si 0.88 23.02 27.74 -169.99 -4.71 18.31 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 29 C -0.12 -1.80 4.39 -26.62 -0.12 -1.92 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 37 H 0.10 0.78 7.84 -51.93 -0.41 0.38 16 38 H 0.11 1.27 6.86 -51.93 -0.36 0.92 16 39 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.41 4.01 8.88 -40.82 -0.36 3.65 16 46 H 0.03 0.69 7.26 -51.93 -0.38 0.31 16 47 H 0.06 1.62 6.22 -51.93 -0.32 1.30 16 48 H 0.35 8.69 4.23 -40.82 -0.17 8.52 16 49 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.08 1.26 6.90 -51.93 -0.36 0.90 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -39.96 390.50 -9.79 -49.74 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.59 Total: 9.35 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -1.71 Total: 12.96 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -0.81 Total: -75.26 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.15 Total: -20.99 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.96 -9.79 -49.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263994770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.112 kcal (2) G-P(sol) polarization free energy of solvation -39.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds