Wall clock time and date at job start Tue Mar 31 2020 21:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45770 * 2 1 4 4 C 1.53044 * 109.45919 * 240.04749 * 2 1 3 5 5 C 1.53198 * 109.31273 * 178.61272 * 4 2 1 6 6 N 1.46927 * 108.77454 * 54.63605 * 5 4 2 7 7 C 1.34773 * 120.63019 * 126.66968 * 6 5 4 8 8 O 1.21279 * 119.99555 * 174.17486 * 7 6 5 9 9 C 1.50694 * 119.99889 * 354.16693 * 7 6 5 10 10 N 1.46500 * 109.46798 * 180.02562 * 9 7 6 11 11 C 1.46391 * 119.32973 * 90.00507 * 10 9 7 12 12 C 1.53240 * 109.15299 * 209.03516 * 11 10 9 13 13 C 1.53233 * 108.56369 * 304.51924 * 12 11 10 14 14 N 1.46378 * 109.15635 * 55.47853 * 13 12 11 15 15 C 1.34134 * 119.33447 * 269.72840 * 10 9 7 16 16 O 1.21585 * 118.69243 * 359.43242 * 15 10 9 17 17 C 1.46927 * 118.73451 * 306.39117 * 6 5 4 18 18 H 1.08997 * 109.58696 * 293.81668 * 17 6 5 19 19 C 1.53007 * 109.58346 * 173.54229 * 17 6 5 20 20 N 1.46498 * 109.47144 * 181.66746 * 19 17 6 21 21 C 1.36936 * 120.00008 * 184.94710 * 20 19 17 22 22 H 1.07992 * 120.00184 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99770 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99626 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00240 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47339 * 89.99945 * 25 23 21 27 27 H 1.48499 * 109.47160 * 210.00170 * 25 23 21 28 28 H 1.48500 * 109.47200 * 330.00177 * 25 23 21 29 29 C 1.53034 * 109.46296 * 119.97848 * 2 1 3 30 30 H 1.08998 * 109.47113 * 300.02192 * 1 2 3 31 31 H 1.08997 * 109.47190 * 60.02572 * 1 2 3 32 32 H 1.09003 * 109.46631 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49775 * 298.56356 * 4 2 1 34 34 H 1.08998 * 109.50005 * 58.62939 * 4 2 1 35 35 H 1.08999 * 109.58472 * 294.84681 * 5 4 2 36 36 H 1.08999 * 109.58296 * 174.42334 * 5 4 2 37 37 H 1.09001 * 109.47330 * 300.00237 * 9 7 6 38 38 H 1.08994 * 109.47317 * 60.00872 * 9 7 6 39 39 H 1.09006 * 109.51877 * 328.93808 * 11 10 9 40 40 H 1.08997 * 109.52107 * 89.06683 * 11 10 9 41 41 H 1.09007 * 109.61753 * 64.24078 * 12 11 10 42 42 H 1.09003 * 109.61796 * 184.60799 * 12 11 10 43 43 H 1.08999 * 109.52678 * 175.38578 * 13 12 11 44 44 H 1.09002 * 109.52180 * 295.51215 * 13 12 11 45 45 H 0.96998 * 119.33044 * 150.91562 * 14 13 12 46 46 H 1.08999 * 109.46743 * 301.66625 * 19 17 6 47 47 H 1.09001 * 109.47272 * 61.66643 * 19 17 6 48 48 H 0.97006 * 119.99601 * 4.95187 * 20 19 17 49 49 H 0.96999 * 119.99780 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.49738 * 61.43218 * 29 2 1 51 51 H 1.09001 * 109.52504 * 301.35233 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0004 7 6 4.9660 -2.2537 -0.0006 8 8 5.4476 -2.6368 1.0445 9 6 5.3716 -2.9014 -1.2994 10 7 6.3507 -3.9582 -1.0332 11 6 5.8827 -5.3214 -0.7769 12 6 6.8850 -6.0334 0.1378 13 6 8.2708 -5.9683 -0.5128 14 7 8.6092 -4.5702 -0.7835 15 6 7.6581 -3.6582 -1.0347 16 8 7.9940 -2.5134 -1.2687 17 6 3.5714 -0.6888 1.2640 18 1 3.9144 0.3406 1.3673 19 6 4.0942 -1.5234 2.4349 20 7 3.5655 -0.9869 3.6915 21 6 3.9785 -1.5110 4.8873 22 1 4.6936 -2.3201 4.9041 23 6 3.4771 -1.0030 6.0778 24 7 3.8737 -1.5071 7.2272 25 14 2.2397 0.3960 6.0488 26 1 0.8641 -0.1608 5.9958 27 1 2.3937 1.2187 7.2755 28 1 2.4775 1.2425 4.8520 29 6 2.0399 -0.7210 1.2499 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7554 -1.2387 34 1 1.6567 -0.2206 -2.1399 35 1 3.9143 0.3413 -1.3674 36 1 3.9416 -1.2840 -2.0988 37 1 4.4935 -3.3329 -1.7801 38 1 5.8143 -2.1527 -1.9562 39 1 4.9074 -5.2863 -0.2914 40 1 5.8010 -5.8617 -1.7200 41 1 6.9122 -5.5367 1.1077 42 1 6.5869 -7.0738 0.2676 43 1 9.0108 -6.3981 0.1624 44 1 8.2612 -6.5293 -1.4473 45 1 9.5403 -4.2982 -0.7843 46 1 3.7708 -2.5576 2.3168 47 1 5.1833 -1.4830 2.4523 48 1 2.9229 -0.2605 3.6763 49 1 3.5237 -1.1518 8.0592 50 1 1.6979 -1.7558 1.2379 51 1 1.6573 -0.2216 2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263994770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:20 Heat of formation + Delta-G solvation = -57.529529 kcal Electronic energy + Delta-G solvation = -31566.070409 eV Core-core repulsion = 27500.217712 eV Total energy + Delta-G solvation = -4065.852697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.05058 -41.17227 -38.74470 -37.47905 -36.91985 -35.85644 -34.94343 -34.01596 -32.16594 -31.81571 -29.89840 -28.55957 -27.44847 -26.44226 -24.77933 -24.35109 -23.85412 -22.59260 -21.49934 -20.40139 -19.86510 -19.60917 -18.60566 -18.24578 -18.07062 -17.16306 -16.77685 -16.57080 -16.35234 -15.77771 -15.64112 -15.55182 -15.26431 -14.98914 -14.79768 -14.78738 -14.70292 -14.49665 -14.47450 -14.15996 -13.88740 -13.62970 -13.31993 -12.95559 -12.88562 -12.74711 -12.64500 -12.52962 -12.35921 -12.26596 -12.22448 -12.08488 -11.94008 -11.82926 -11.39560 -11.27376 -11.21882 -11.05698 -10.50592 -10.12798 -9.64054 -9.52783 -9.26547 -8.06908 -5.41176 1.30854 1.37258 1.44533 1.50895 1.65023 1.99501 2.20603 2.44164 2.88559 3.23095 3.45650 3.71487 3.74735 3.78183 3.81016 3.89725 3.95508 4.05289 4.09185 4.21996 4.24701 4.28926 4.35925 4.45909 4.52323 4.63933 4.64950 4.69634 4.73546 4.79405 4.85385 4.90216 4.92690 5.06579 5.12368 5.14381 5.20640 5.23146 5.26957 5.33023 5.40995 5.54801 5.57003 5.65970 5.70506 6.07782 6.16245 6.46611 6.76174 7.01407 7.25097 7.51279 7.77064 8.01104 9.15654 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.004026 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.950791 B = 6953.076859 C = 9085.533499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.120 4.120 5 C 0.100 3.900 6 N -0.604 5.604 7 C 0.480 3.520 8 O -0.565 6.565 9 C 0.120 3.880 10 N -0.608 5.608 11 C 0.111 3.889 12 C -0.156 4.156 13 C 0.110 3.890 14 N -0.735 5.735 15 C 0.704 3.296 16 O -0.648 6.648 17 C 0.145 3.855 18 H 0.064 0.936 19 C 0.181 3.819 20 N -0.758 5.758 21 C -0.236 4.236 22 H 0.039 0.961 23 C -0.064 4.064 24 N -0.986 5.986 25 Si 0.962 3.038 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.253 1.253 29 C -0.115 4.115 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.416 0.584 46 H 0.008 0.992 47 H 0.024 0.976 48 H 0.364 0.636 49 H 0.260 0.740 50 H 0.058 0.942 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -6.565 -29.669 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.021 4.021 6 N -0.339 5.339 7 C 0.268 3.732 8 O -0.443 6.443 9 C -0.007 4.007 10 N -0.343 5.343 11 C -0.011 4.011 12 C -0.194 4.194 13 C -0.013 4.013 14 N -0.391 5.391 15 C 0.405 3.595 16 O -0.531 6.531 17 C 0.041 3.959 18 H 0.082 0.918 19 C 0.055 3.945 20 N -0.406 5.406 21 C -0.367 4.367 22 H 0.057 0.943 23 C -0.255 4.255 24 N -0.636 5.636 25 Si 0.787 3.213 26 H -0.195 1.195 27 H -0.216 1.216 28 H -0.177 1.177 29 C -0.153 4.153 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.170 0.830 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.059 0.941 42 H 0.147 0.853 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.042 0.958 48 H 0.198 0.802 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.376 -6.451 -29.148 29.948 hybrid contribution 0.132 0.810 1.493 1.703 sum -2.244 -5.642 -27.656 28.314 Atomic orbital electron populations 1.21783 0.93884 1.02042 1.02256 1.21157 0.96623 0.99474 0.93702 0.90704 1.21978 0.93699 1.01875 0.98243 1.22152 0.95395 1.00461 0.84105 1.48262 1.42925 1.35275 1.07451 1.22092 0.78336 0.80040 0.92756 1.90819 1.54776 1.64220 1.34460 1.21417 0.94277 0.91919 0.93106 1.46508 1.03349 1.10493 1.73980 1.21852 0.98393 0.80184 1.00635 1.22224 0.95403 1.03606 0.98168 1.21783 0.97031 0.80669 1.01813 1.44967 1.08734 1.10032 1.75412 1.15695 0.82092 0.84185 0.77575 1.90889 1.81549 1.21098 1.59601 1.21254 0.95037 0.96435 0.83199 0.91775 1.21028 0.95971 0.93970 0.83498 1.42885 1.53079 1.42450 1.02194 1.18919 1.19758 1.13331 0.84666 0.94268 1.25592 1.02840 1.02888 0.94218 1.69912 1.49479 1.46749 0.97499 0.85319 0.79117 0.79190 0.77641 1.19490 1.21603 1.17721 1.21941 0.92685 1.01366 0.99347 0.93608 0.90460 0.92739 0.91037 0.87313 0.90396 0.86639 0.83040 0.86450 0.90495 0.87728 0.94149 0.85315 0.88234 0.88715 0.74623 0.97365 0.95771 0.80157 0.93144 0.92285 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 2 C -0.09 -1.70 2.68 -10.77 -0.03 -1.73 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.12 -1.52 5.36 30.68 0.16 -1.36 16 5 C 0.10 1.54 6.35 86.36 0.55 2.09 16 6 N -0.60 -16.54 2.97 -795.02 -2.36 -18.91 16 7 C 0.48 15.21 7.60 87.66 0.67 15.87 16 8 O -0.56 -24.77 11.99 -3.03 -0.04 -24.81 16 9 C 0.12 2.56 4.16 85.63 0.36 2.92 16 10 N -0.61 -14.55 2.30 -845.66 -1.95 -16.50 16 11 C 0.11 1.83 6.49 86.48 0.56 2.39 16 12 C -0.16 -2.53 6.20 30.75 0.19 -2.34 16 13 C 0.11 1.45 7.20 86.48 0.62 2.07 16 14 N -0.73 -15.99 5.58 -479.87 -2.68 -18.67 16 15 C 0.70 20.72 8.18 179.45 1.47 22.19 16 16 O -0.65 -24.64 16.49 -3.98 -0.07 -24.70 16 17 C 0.14 5.02 3.09 44.98 0.14 5.16 16 18 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 19 C 0.18 8.68 4.14 86.38 0.36 9.03 16 20 N -0.76 -40.74 5.19 -343.45 -1.78 -42.52 16 21 C -0.24 -15.22 10.47 84.03 0.88 -14.34 16 22 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 23 C -0.06 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.99 -67.33 13.97 21.65 0.30 -67.03 16 25 Si 0.96 48.04 27.74 68.60 1.90 49.94 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.25 -11.44 6.52 99.48 0.65 -10.79 16 29 C -0.11 -3.31 4.39 30.67 0.13 -3.17 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.05 5.93 -2.39 -0.01 1.03 16 37 H 0.15 1.71 7.84 -2.39 -0.02 1.69 16 38 H 0.12 2.45 6.86 -2.39 -0.02 2.43 16 39 H 0.08 1.37 8.07 -2.38 -0.02 1.35 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.42 8.27 8.88 -92.71 -0.82 7.44 16 46 H 0.01 0.43 7.26 -2.39 -0.02 0.42 16 47 H 0.02 1.37 6.22 -2.39 -0.01 1.35 16 48 H 0.36 17.98 4.23 -92.70 -0.39 17.59 16 49 H 0.26 16.66 8.31 -92.71 -0.77 15.89 16 50 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.06 1.85 6.90 -2.39 -0.02 1.84 16 Total: -1.00 -97.05 390.50 0.18 -96.87 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.34 Total: 32.80 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 7.19 Total: 33.52 kcal Atomic # 7 Polarization: -155.15 SS G_CDS: -8.47 Total: -163.62 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.10 Total: -49.51 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.90 Total: 49.94 kcal Total: -97.05 0.18 -96.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263994770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.339 kcal (2) G-P(sol) polarization free energy of solvation -97.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds