Wall clock time and date at job start Tue Mar 31 2020 22:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46870 * 2 1 4 4 C 1.50700 * 109.47334 * 120.00194 * 2 1 3 5 5 O 1.21279 * 119.99559 * 106.16438 * 4 2 1 6 6 N 1.34780 * 119.99674 * 286.16838 * 4 2 1 7 7 C 1.46493 * 120.00383 * 5.07658 * 6 4 2 8 8 C 1.46501 * 119.99307 * 185.07856 * 6 4 2 9 9 C 1.52997 * 109.47204 * 269.99480 * 8 6 4 10 10 O 1.42902 * 109.46791 * 65.00480 * 9 8 6 11 11 C 1.42908 * 113.99761 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46750 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47647 * 64.99470 * 12 11 10 14 14 C 1.46502 * 120.00189 * 270.00051 * 13 12 11 15 15 C 1.36940 * 119.99952 * 89.99489 * 13 12 11 16 16 H 1.08007 * 119.99999 * 11.50094 * 15 13 12 17 17 C 1.38812 * 120.00377 * 191.49852 * 15 13 12 18 18 N 1.31619 * 119.99870 * 25.35521 * 17 15 13 19 19 Si 1.86802 * 120.00140 * 205.35938 * 17 15 13 20 20 H 1.48502 * 109.47212 * 94.99499 * 19 17 15 21 21 H 1.48496 * 109.46724 * 214.99402 * 19 17 15 22 22 H 1.48501 * 109.47025 * 334.99309 * 19 17 15 23 23 C 1.50702 * 109.47124 * 240.00697 * 2 1 3 24 24 C 1.39871 * 126.03514 * 300.01699 * 23 2 1 25 25 N 1.30838 * 108.20299 * 179.97438 * 24 23 2 26 26 N 1.40090 * 108.20025 * 0.02562 * 25 24 23 27 27 C 1.46506 * 126.03290 * 179.97438 * 26 25 24 28 28 C 1.34947 * 107.92736 * 359.75949 * 26 25 24 29 29 H 1.08996 * 109.47328 * 45.25821 * 1 2 3 30 30 H 1.09001 * 109.46463 * 165.25618 * 1 2 3 31 31 H 1.08998 * 109.47241 * 285.25668 * 1 2 3 32 32 H 1.09005 * 109.46996 * 267.36854 * 7 6 4 33 33 H 1.09005 * 109.47252 * 27.36329 * 7 6 4 34 34 H 1.08996 * 109.47437 * 147.36741 * 7 6 4 35 35 H 1.08995 * 109.47277 * 30.00198 * 8 6 4 36 36 H 1.09000 * 109.46732 * 150.00236 * 8 6 4 37 37 H 1.08996 * 109.47499 * 185.00413 * 9 8 6 38 38 H 1.09004 * 109.47147 * 305.00840 * 9 8 6 39 39 H 1.09002 * 109.47004 * 299.99485 * 11 10 9 40 40 H 1.08998 * 109.47578 * 59.99889 * 11 10 9 41 41 H 1.09008 * 109.47004 * 184.99769 * 12 11 10 42 42 H 1.09003 * 109.47173 * 304.99519 * 12 11 10 43 43 H 1.09003 * 109.46927 * 93.83184 * 14 13 12 44 44 H 1.09000 * 109.46700 * 213.83223 * 14 13 12 45 45 H 1.08992 * 109.46814 * 333.83224 * 14 13 12 46 46 H 0.96992 * 120.00229 * 180.02562 * 18 17 15 47 47 H 1.08000 * 125.90039 * 0.02562 * 24 23 2 48 48 H 1.08998 * 109.46922 * 89.97906 * 27 26 25 49 49 H 1.09004 * 109.47044 * 209.97924 * 27 26 25 50 50 H 1.09003 * 109.47087 * 329.97705 * 27 26 25 51 51 H 1.07999 * 126.12308 * 180.24083 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5102 -1.8212 1.1366 6 7 1.9506 -0.1114 2.4350 7 6 1.2738 1.1812 2.5659 8 6 2.5386 -0.7531 3.6135 9 6 1.4959 -1.6551 4.2766 10 8 1.1601 -2.7255 3.3914 11 6 0.1878 -3.6313 3.9173 12 6 -0.0927 -4.7306 2.8907 13 7 1.1167 -5.5329 2.6914 14 6 2.0844 -5.1552 1.6584 15 6 1.3428 -6.6360 3.4708 16 1 0.5548 -7.0236 4.0996 17 6 2.5846 -7.2560 3.4527 18 7 3.6583 -6.5694 3.1241 19 14 2.7319 -9.0650 3.8948 20 1 2.7007 -9.8817 2.6549 21 1 4.0132 -9.2973 4.6085 22 1 1.5988 -9.4540 4.7723 23 6 2.0324 -0.7103 -1.2306 24 6 1.7732 -2.0406 -1.5762 25 7 2.3769 -2.2936 -2.7091 26 7 3.0408 -1.1306 -3.1204 27 6 3.8405 -0.9798 -4.3386 28 6 2.8097 -0.1723 -2.1987 29 1 -0.3634 0.7233 -0.7299 30 1 -0.3632 -0.9939 -0.2616 31 1 -0.3633 0.2704 0.9914 32 1 2.0031 1.9850 2.4647 33 1 0.5179 1.2762 1.7862 34 1 0.7969 1.2443 3.5439 35 1 3.3974 -1.3521 3.3105 36 1 2.8602 0.0114 4.3208 37 1 1.9037 -2.0629 5.2015 38 1 0.6012 -1.0736 4.4992 39 1 0.5682 -4.0801 4.8349 40 1 -0.7338 -3.0906 4.1321 41 1 -0.8973 -5.3701 3.2540 42 1 -0.3880 -4.2773 1.9444 43 1 2.8625 -4.5323 2.0998 44 1 2.5343 -6.0537 1.2361 45 1 1.5765 -4.5985 0.8710 46 1 4.5259 -7.0026 3.1111 47 1 1.1770 -2.7382 -1.0068 48 1 3.1998 -0.6456 -5.1547 49 1 4.6262 -0.2436 -4.1687 50 1 4.2904 -1.9379 -4.5988 51 1 3.1805 0.8416 -2.2276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264669337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:12 Heat of formation + Delta-G solvation = 45.481393 kcal Electronic energy + Delta-G solvation = -31438.924571 eV Core-core repulsion = 27377.538763 eV Total energy + Delta-G solvation = -4061.385808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.18657 -39.52246 -37.25312 -35.45690 -34.77106 -34.32292 -32.55819 -31.33742 -29.93905 -29.15127 -27.69942 -26.64355 -26.40608 -25.46915 -24.20240 -22.81517 -22.33613 -20.99955 -20.31601 -20.09469 -18.73403 -16.90454 -16.65583 -16.54064 -15.97745 -15.53658 -15.36549 -15.32300 -14.88845 -14.47980 -14.24591 -14.06425 -13.68652 -13.41830 -13.20015 -13.15269 -12.95264 -12.89971 -12.66060 -12.59903 -12.40580 -12.11294 -11.97456 -11.80780 -11.50061 -11.38452 -11.20329 -11.12384 -10.72923 -10.67581 -10.55097 -10.33750 -10.28587 -9.80134 -9.73525 -9.55869 -9.32319 -9.10744 -8.72532 -8.37153 -8.23906 -8.18129 -6.56693 -5.50601 -2.80766 1.99264 2.62713 2.92772 3.11917 3.39112 3.53075 3.60170 3.61058 4.42654 4.50645 4.70787 4.72526 4.79880 4.98966 5.03491 5.06361 5.19892 5.23572 5.28169 5.31166 5.44416 5.51236 5.52802 5.58324 5.59547 5.66758 5.74047 5.76123 5.81149 5.87026 5.96238 6.08184 6.18743 6.27123 6.32157 6.39976 6.44402 6.69100 6.79755 6.85683 6.96141 7.08613 7.30896 7.70591 7.81739 7.89103 8.02057 8.11432 8.31584 8.59939 8.71920 9.47991 10.16849 10.65145 11.54953 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.003877 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.854172 B = 7219.979641 C = 9064.531064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.025 4.025 3 H 0.089 0.911 4 C 0.510 3.490 5 O -0.479 6.479 6 N -0.621 5.621 7 C 0.070 3.930 8 C 0.123 3.877 9 C 0.046 3.954 10 O -0.344 6.344 11 C 0.041 3.959 12 C 0.157 3.843 13 N -0.595 5.595 14 C 0.183 3.817 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.282 1.282 23 C -0.217 4.217 24 C 0.094 3.906 25 N -0.300 5.300 26 N -0.384 5.384 27 C 0.105 3.895 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.042 0.958 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.033 0.967 45 H -0.003 1.003 46 H 0.248 0.752 47 H 0.183 0.817 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 23.427 -7.799 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 H 0.107 0.893 4 C 0.295 3.705 5 O -0.349 6.349 6 N -0.358 5.358 7 C -0.073 4.073 8 C 0.000 4.000 9 C -0.032 4.032 10 O -0.262 6.262 11 C -0.039 4.039 12 C 0.029 3.971 13 N -0.318 5.318 14 C 0.038 3.962 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.198 4.198 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.207 1.207 23 C -0.229 4.229 24 C -0.093 4.093 25 N -0.121 5.121 26 N -0.166 5.166 27 C -0.036 4.036 28 C -0.094 4.094 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.015 0.985 46 H 0.059 0.941 47 H 0.199 0.801 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.609 21.842 -9.139 23.951 hybrid contribution -0.005 -0.091 1.502 1.504 sum -3.615 21.751 -7.638 23.335 Atomic orbital electron populations 1.21895 0.92750 1.03343 1.01992 1.19464 0.96798 0.98533 0.89988 0.89304 1.20465 0.79756 0.86556 0.83708 1.90871 1.41683 1.17411 1.84944 1.47713 1.58555 1.21447 1.08052 1.21955 0.97304 0.84989 1.03064 1.21428 0.96734 0.95151 0.86698 1.22747 0.96860 0.89937 0.93696 1.88193 1.60718 1.37190 1.40088 1.23485 0.89093 0.91612 0.99740 1.20779 0.90531 0.90242 0.95552 1.44025 1.20879 1.28449 1.38425 1.20599 0.90797 0.96943 0.87819 1.19221 0.95904 1.01930 1.21377 0.91370 1.24714 0.95093 0.98246 1.01725 1.70268 0.97283 1.33461 1.52647 0.86464 0.76753 0.87250 0.77634 1.21788 1.22212 1.20714 1.19480 1.08924 0.95641 0.98862 1.23748 0.97636 0.95464 0.92426 1.77454 1.13581 1.05164 1.15882 1.48398 1.40625 1.08415 1.19129 1.21763 0.94187 1.03986 0.83684 1.22138 1.00433 0.95472 0.91311 0.91899 0.91493 0.91587 0.93263 0.90213 0.91679 0.88962 0.90177 0.93501 0.94951 0.93933 0.96423 0.92812 0.93979 0.94984 0.94802 0.98452 0.94132 0.80051 0.91160 0.89889 0.89381 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.71 37.16 0.32 -1.08 16 2 C -0.02 -0.29 2.27 -92.92 -0.21 -0.50 16 3 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 4 C 0.51 7.80 6.57 -10.98 -0.07 7.73 16 5 O -0.48 -9.97 13.80 -7.46 -0.10 -10.07 16 6 N -0.62 -7.97 2.86 -181.58 -0.52 -8.49 16 7 C 0.07 0.56 9.81 59.84 0.59 1.15 16 8 C 0.12 1.74 5.86 -4.04 -0.02 1.72 16 9 C 0.05 0.75 6.28 37.16 0.23 0.98 16 10 O -0.34 -7.21 8.48 -48.25 -0.41 -7.62 16 11 C 0.04 0.84 6.28 37.16 0.23 1.07 16 12 C 0.16 3.56 6.11 -4.04 -0.02 3.54 16 13 N -0.60 -16.49 2.90 -181.12 -0.52 -17.02 16 14 C 0.18 5.23 8.68 59.85 0.52 5.75 16 15 C -0.25 -7.54 9.68 -15.06 -0.15 -7.69 16 16 H 0.07 1.95 7.93 -52.48 -0.42 1.53 16 17 C 0.00 0.02 4.86 -17.43 -0.08 -0.07 16 18 N -0.89 -28.28 10.85 55.49 0.60 -27.68 16 19 Si 0.89 23.20 29.62 -169.99 -5.04 18.16 16 20 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.22 -2.96 4.51 -105.05 -0.47 -3.43 16 24 C 0.09 1.56 10.23 -17.36 -0.18 1.38 16 25 N -0.30 -5.06 12.58 30.62 0.39 -4.68 16 26 N -0.38 -4.96 4.01 -68.16 -0.27 -5.24 16 27 C 0.11 0.85 11.47 59.85 0.69 1.53 16 28 C 0.05 0.61 11.38 -17.23 -0.20 0.41 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.79 7.61 -51.93 -0.40 0.39 16 31 H 0.07 0.59 5.62 -51.93 -0.29 0.30 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.55 4.27 -51.93 -0.22 0.32 16 34 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.09 1.64 7.50 -51.93 -0.39 1.25 16 36 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 1.14 8.03 -51.92 -0.42 0.72 16 42 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 43 H 0.03 1.01 7.70 -51.93 -0.40 0.61 16 44 H 0.03 1.04 6.81 -51.93 -0.35 0.68 16 45 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 46 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.18 3.20 8.06 -52.49 -0.42 2.78 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -39.35 411.86 -7.22 -46.57 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.72 Total: -2.65 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 1.17 Total: 12.49 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.33 Total: -63.10 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.51 Total: -17.69 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.04 Total: 18.16 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -39.35 -7.22 -46.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264669337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.053 kcal (2) G-P(sol) polarization free energy of solvation -39.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds