Wall clock time and date at job start Tue Mar 31 2020 22:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46870 * 2 1 4 4 C 1.50700 * 109.47334 * 120.00194 * 2 1 3 5 5 O 1.21279 * 119.99559 * 106.16438 * 4 2 1 6 6 N 1.34780 * 119.99674 * 286.16838 * 4 2 1 7 7 C 1.46493 * 120.00383 * 5.07658 * 6 4 2 8 8 C 1.46501 * 119.99307 * 185.07856 * 6 4 2 9 9 C 1.52997 * 109.47204 * 269.99480 * 8 6 4 10 10 O 1.42902 * 109.46791 * 65.00480 * 9 8 6 11 11 C 1.42908 * 113.99761 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46750 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47647 * 64.99470 * 12 11 10 14 14 C 1.46502 * 120.00189 * 270.00051 * 13 12 11 15 15 C 1.36940 * 119.99952 * 89.99489 * 13 12 11 16 16 H 1.08007 * 119.99999 * 11.50094 * 15 13 12 17 17 C 1.38812 * 120.00377 * 191.49852 * 15 13 12 18 18 N 1.31619 * 119.99870 * 25.35521 * 17 15 13 19 19 Si 1.86802 * 120.00140 * 205.35938 * 17 15 13 20 20 H 1.48502 * 109.47212 * 94.99499 * 19 17 15 21 21 H 1.48496 * 109.46724 * 214.99402 * 19 17 15 22 22 H 1.48501 * 109.47025 * 334.99309 * 19 17 15 23 23 C 1.50702 * 109.47124 * 240.00697 * 2 1 3 24 24 C 1.39871 * 126.03514 * 300.01699 * 23 2 1 25 25 N 1.30838 * 108.20299 * 179.97438 * 24 23 2 26 26 N 1.40090 * 108.20025 * 0.02562 * 25 24 23 27 27 C 1.46506 * 126.03290 * 179.97438 * 26 25 24 28 28 C 1.34947 * 107.92736 * 359.75949 * 26 25 24 29 29 H 1.08996 * 109.47328 * 45.25821 * 1 2 3 30 30 H 1.09001 * 109.46463 * 165.25618 * 1 2 3 31 31 H 1.08998 * 109.47241 * 285.25668 * 1 2 3 32 32 H 1.09005 * 109.46996 * 267.36854 * 7 6 4 33 33 H 1.09005 * 109.47252 * 27.36329 * 7 6 4 34 34 H 1.08996 * 109.47437 * 147.36741 * 7 6 4 35 35 H 1.08995 * 109.47277 * 30.00198 * 8 6 4 36 36 H 1.09000 * 109.46732 * 150.00236 * 8 6 4 37 37 H 1.08996 * 109.47499 * 185.00413 * 9 8 6 38 38 H 1.09004 * 109.47147 * 305.00840 * 9 8 6 39 39 H 1.09002 * 109.47004 * 299.99485 * 11 10 9 40 40 H 1.08998 * 109.47578 * 59.99889 * 11 10 9 41 41 H 1.09008 * 109.47004 * 184.99769 * 12 11 10 42 42 H 1.09003 * 109.47173 * 304.99519 * 12 11 10 43 43 H 1.09003 * 109.46927 * 93.83184 * 14 13 12 44 44 H 1.09000 * 109.46700 * 213.83223 * 14 13 12 45 45 H 1.08992 * 109.46814 * 333.83224 * 14 13 12 46 46 H 0.96992 * 120.00229 * 180.02562 * 18 17 15 47 47 H 1.08000 * 125.90039 * 0.02562 * 24 23 2 48 48 H 1.08998 * 109.46922 * 89.97906 * 27 26 25 49 49 H 1.09004 * 109.47044 * 209.97924 * 27 26 25 50 50 H 1.09003 * 109.47087 * 329.97705 * 27 26 25 51 51 H 1.07999 * 126.12308 * 180.24083 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5102 -1.8212 1.1366 6 7 1.9506 -0.1114 2.4350 7 6 1.2738 1.1812 2.5659 8 6 2.5386 -0.7531 3.6135 9 6 1.4959 -1.6551 4.2766 10 8 1.1601 -2.7255 3.3914 11 6 0.1878 -3.6313 3.9173 12 6 -0.0927 -4.7306 2.8907 13 7 1.1167 -5.5329 2.6914 14 6 2.0844 -5.1552 1.6584 15 6 1.3428 -6.6360 3.4708 16 1 0.5548 -7.0236 4.0996 17 6 2.5846 -7.2560 3.4527 18 7 3.6583 -6.5694 3.1241 19 14 2.7319 -9.0650 3.8948 20 1 2.7007 -9.8817 2.6549 21 1 4.0132 -9.2973 4.6085 22 1 1.5988 -9.4540 4.7723 23 6 2.0324 -0.7103 -1.2306 24 6 1.7732 -2.0406 -1.5762 25 7 2.3769 -2.2936 -2.7091 26 7 3.0408 -1.1306 -3.1204 27 6 3.8405 -0.9798 -4.3386 28 6 2.8097 -0.1723 -2.1987 29 1 -0.3634 0.7233 -0.7299 30 1 -0.3632 -0.9939 -0.2616 31 1 -0.3633 0.2704 0.9914 32 1 2.0031 1.9850 2.4647 33 1 0.5179 1.2762 1.7862 34 1 0.7969 1.2443 3.5439 35 1 3.3974 -1.3521 3.3105 36 1 2.8602 0.0114 4.3208 37 1 1.9037 -2.0629 5.2015 38 1 0.6012 -1.0736 4.4992 39 1 0.5682 -4.0801 4.8349 40 1 -0.7338 -3.0906 4.1321 41 1 -0.8973 -5.3701 3.2540 42 1 -0.3880 -4.2773 1.9444 43 1 2.8625 -4.5323 2.0998 44 1 2.5343 -6.0537 1.2361 45 1 1.5765 -4.5985 0.8710 46 1 4.5259 -7.0026 3.1111 47 1 1.1770 -2.7382 -1.0068 48 1 3.1998 -0.6456 -5.1547 49 1 4.6262 -0.2436 -4.1687 50 1 4.2904 -1.9379 -4.5988 51 1 3.1805 0.8416 -2.2276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264669337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:10 Heat of formation + Delta-G solvation = 17.905375 kcal Electronic energy + Delta-G solvation = -31440.120356 eV Core-core repulsion = 27377.538763 eV Total energy + Delta-G solvation = -4062.581594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.19656 -40.61703 -38.83920 -37.20362 -36.20927 -35.31787 -33.60073 -33.34773 -31.25544 -30.24911 -29.38970 -27.81784 -27.48660 -27.22261 -25.24485 -24.77616 -23.49575 -22.14865 -21.99405 -21.32245 -19.74324 -18.74632 -17.88135 -17.69228 -17.36266 -16.93376 -16.74001 -16.39054 -16.28043 -16.04782 -15.43034 -15.22366 -15.19165 -15.04938 -14.77964 -14.38711 -14.10385 -13.87659 -13.73158 -13.48764 -13.46037 -13.37399 -13.21911 -13.05731 -12.96982 -12.80777 -12.60141 -12.56942 -12.44648 -12.35126 -12.22475 -12.02211 -11.95928 -11.76341 -11.66968 -11.36507 -10.52851 -10.43438 -10.27112 -10.17530 -9.40114 -9.22634 -8.85039 -7.81483 -5.14942 1.03157 1.43108 1.47377 1.55608 1.77365 1.83215 2.04002 2.40189 2.53253 3.04678 3.29691 3.65711 3.74703 3.81951 4.05386 4.20943 4.24855 4.29067 4.35536 4.41517 4.42836 4.44812 4.48186 4.51738 4.57584 4.58852 4.59423 4.69555 4.70653 4.84242 4.90091 4.90601 4.94602 4.98099 5.00040 5.05850 5.15198 5.16864 5.22966 5.38520 5.48117 5.65096 5.71973 5.79379 5.86925 6.26575 6.29343 6.62582 6.73378 6.81640 7.15336 7.64635 7.92488 8.38848 9.24540 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.003877 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.854172 B = 7219.979641 C = 9064.531064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 H 0.131 0.869 4 C 0.500 3.500 5 O -0.549 6.549 6 N -0.618 5.618 7 C 0.063 3.937 8 C 0.127 3.873 9 C 0.041 3.959 10 O -0.375 6.375 11 C 0.051 3.949 12 C 0.151 3.849 13 N -0.610 5.610 14 C 0.221 3.779 15 C -0.264 4.264 16 H 0.080 0.920 17 C -0.059 4.059 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.292 1.292 21 H -0.297 1.297 22 H -0.262 1.262 23 C -0.236 4.236 24 C 0.069 3.931 25 N -0.351 5.351 26 N -0.384 5.384 27 C 0.095 3.905 28 C 0.070 3.930 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.125 0.875 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.048 0.952 43 H -0.007 1.007 44 H 0.002 0.998 45 H 0.005 0.995 46 H 0.243 0.757 47 H 0.150 0.850 48 H 0.091 0.909 49 H 0.118 0.882 50 H 0.077 0.923 51 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 26.911 -7.499 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 H 0.148 0.852 4 C 0.288 3.712 5 O -0.424 6.424 6 N -0.353 5.353 7 C -0.078 4.078 8 C 0.003 3.997 9 C -0.037 4.037 10 O -0.294 6.294 11 C -0.028 4.028 12 C 0.024 3.976 13 N -0.333 5.333 14 C 0.076 3.924 15 C -0.394 4.394 16 H 0.098 0.902 17 C -0.254 4.254 18 N -0.580 5.580 19 Si 0.791 3.209 20 H -0.219 1.219 21 H -0.225 1.225 22 H -0.186 1.186 23 C -0.248 4.248 24 C -0.116 4.116 25 N -0.173 5.173 26 N -0.166 5.166 27 C -0.045 4.045 28 C -0.077 4.077 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.142 0.858 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.011 0.989 44 H 0.021 0.979 45 H 0.023 0.977 46 H 0.052 0.948 47 H 0.167 0.833 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.096 0.904 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.997 25.379 -8.810 27.325 hybrid contribution 0.396 -1.044 1.382 1.776 sum -4.602 24.335 -7.428 25.856 Atomic orbital electron populations 1.21873 0.91522 1.02436 1.03530 1.19515 0.97621 0.99529 0.86987 0.85158 1.21281 0.78621 0.85955 0.85377 1.90860 1.44904 1.20604 1.86080 1.47838 1.57961 1.22730 1.06757 1.22291 0.98111 0.82802 1.04622 1.21357 0.94627 0.95635 0.88036 1.23001 0.98654 0.89215 0.92808 1.88188 1.61067 1.38473 1.41681 1.23173 0.90768 0.91574 0.97314 1.21016 0.88896 0.90882 0.96763 1.44216 1.21767 1.29321 1.37996 1.19996 0.90092 0.94401 0.87911 1.19652 0.96098 1.02522 1.21104 0.90222 1.25597 0.94757 1.02453 1.02570 1.70454 0.97598 1.35118 1.54851 0.85306 0.76999 0.81264 0.77348 1.21925 1.22455 1.18599 1.19774 1.10020 0.94547 1.00477 1.23499 0.98389 0.96892 0.92837 1.77322 1.15388 1.07946 1.16681 1.48792 1.39911 1.07527 1.20360 1.22166 0.95001 1.04655 0.82674 1.22895 0.98347 0.96917 0.89584 0.89048 0.94579 0.90319 0.90694 0.88726 0.90086 0.93806 0.85752 0.94455 0.91671 0.96432 0.92213 0.90969 0.93403 0.98885 0.97940 0.97667 0.94757 0.83251 0.89030 0.86360 0.90380 0.76291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.71 71.98 0.63 -1.79 16 2 C -0.01 -0.30 2.27 -12.28 -0.03 -0.33 16 3 H 0.13 1.65 7.69 -2.38 -0.02 1.63 16 4 C 0.50 15.33 6.57 87.66 0.58 15.91 16 5 O -0.55 -24.50 13.80 9.42 0.13 -24.37 16 6 N -0.62 -14.83 2.86 -846.77 -2.42 -17.25 16 7 C 0.06 0.73 9.81 127.77 1.25 1.98 16 8 C 0.13 3.55 5.86 86.38 0.51 4.06 16 9 C 0.04 1.31 6.28 71.98 0.45 1.76 16 10 O -0.38 -16.13 8.48 -136.53 -1.16 -17.29 16 11 C 0.05 2.10 6.28 71.98 0.45 2.55 16 12 C 0.15 6.90 6.11 86.38 0.53 7.42 16 13 N -0.61 -35.04 2.90 -726.93 -2.11 -37.15 16 14 C 0.22 13.57 8.68 127.77 1.11 14.68 16 15 C -0.26 -15.94 9.68 84.03 0.81 -15.13 16 16 H 0.08 4.54 7.93 -2.91 -0.02 4.52 16 17 C -0.06 -3.65 4.86 84.86 0.41 -3.23 16 18 N -0.93 -62.16 10.85 21.65 0.23 -61.93 16 19 Si 0.96 48.97 29.62 68.60 2.03 51.00 16 20 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 21 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 22 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 23 C -0.24 -6.39 4.51 -20.14 -0.09 -6.48 16 24 C 0.07 2.49 10.23 85.24 0.87 3.36 16 25 N -0.35 -12.59 12.58 -57.02 -0.72 -13.31 16 26 N -0.38 -9.66 4.01 -369.55 -1.48 -11.15 16 27 C 0.09 1.36 11.47 127.77 1.47 2.82 16 28 C 0.07 1.45 11.38 83.54 0.95 2.40 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.03 0.86 7.61 -2.39 -0.02 0.84 16 31 H 0.08 1.17 5.62 -2.39 -0.01 1.16 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.09 0.84 4.27 -2.38 -0.01 0.83 16 34 H 0.08 0.73 8.09 -2.39 -0.02 0.72 16 35 H 0.04 1.66 7.50 -2.39 -0.02 1.64 16 36 H 0.12 2.31 8.07 -2.39 -0.02 2.29 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 3.00 8.03 -2.38 -0.02 2.98 16 42 H 0.05 2.12 7.87 -2.39 -0.02 2.10 16 43 H -0.01 -0.50 7.70 -2.39 -0.02 -0.52 16 44 H 0.00 0.13 6.81 -2.39 -0.02 0.11 16 45 H 0.00 0.28 7.85 -2.39 -0.02 0.26 16 46 H 0.24 15.71 8.31 -92.71 -0.77 14.94 16 47 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 48 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.22 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -95.16 411.86 5.31 -89.84 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.90 Total: 11.60 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 9.90 Total: 29.99 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -6.49 Total: -140.78 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.03 Total: -41.66 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -95.16 5.31 -89.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264669337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.749 kcal (2) G-P(sol) polarization free energy of solvation -95.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds