Wall clock time and date at job start Tue Mar 31 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.62545 * 2 1 4 4 C 1.55138 * 110.70765 * 123.10291 * 2 1 3 5 5 C 1.54908 * 101.68619 * 154.19455 * 4 2 1 6 6 N 1.47887 * 104.77420 * 322.97931 * 5 4 2 7 7 C 1.46907 * 111.01481 * 146.33028 * 6 5 4 8 8 C 1.50703 * 109.46783 * 69.12675 * 7 6 5 9 9 O 1.21281 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99574 * 179.97438 * 8 7 6 11 11 C 1.47025 * 125.65086 * 359.69639 * 10 8 7 12 12 C 1.54334 * 107.26258 * 178.84933 * 11 10 8 13 13 C 1.55150 * 103.02205 * 338.13513 * 12 11 10 14 14 H 1.09010 * 111.00398 * 277.23624 * 13 12 11 15 15 N 1.46903 * 111.00323 * 153.38687 * 13 12 11 16 16 C 1.46897 * 111.00088 * 92.80409 * 15 13 12 17 17 C 1.50703 * 109.47243 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99927 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00317 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00394 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99517 * 359.97438 * 20 19 17 22 22 C 1.38940 * 120.00281 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00404 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46825 * 59.99794 * 24 22 20 26 26 H 1.48496 * 109.47478 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46938 * 300.00494 * 24 22 20 28 28 C 1.47427 * 125.64446 * 179.97438 * 10 8 7 29 29 C 1.47444 * 108.58784 * 24.04325 * 6 5 4 30 30 H 1.09000 * 109.47005 * 298.35065 * 1 2 3 31 31 H 1.09000 * 109.47118 * 58.34592 * 1 2 3 32 32 H 1.08993 * 109.46977 * 178.34874 * 1 2 3 33 33 H 1.09002 * 110.99302 * 272.30456 * 4 2 1 34 34 H 1.08995 * 110.99003 * 36.08343 * 4 2 1 35 35 H 1.08993 * 110.37866 * 81.77867 * 5 4 2 36 36 H 1.09005 * 110.37455 * 204.12444 * 5 4 2 37 37 H 1.09005 * 109.46832 * 189.12286 * 7 6 5 38 38 H 1.08994 * 109.46980 * 309.12661 * 7 6 5 39 39 H 1.09000 * 109.87571 * 298.38521 * 11 10 8 40 40 H 1.08994 * 109.88544 * 59.55594 * 11 10 8 41 41 H 1.09004 * 110.84533 * 219.66915 * 12 11 10 42 42 H 1.08998 * 110.67080 * 96.52010 * 12 11 10 43 43 H 1.00897 * 110.99497 * 216.75234 * 15 13 12 44 44 H 1.09007 * 109.47211 * 299.99882 * 16 15 13 45 45 H 1.09000 * 109.47591 * 59.99870 * 16 15 13 46 46 H 0.97003 * 119.99750 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00323 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.36914 * 322.93433 * 28 10 8 49 49 H 1.09002 * 110.36230 * 85.26225 * 28 10 8 50 50 H 1.08998 * 109.89066 * 239.63908 * 29 6 5 51 51 H 1.09001 * 109.89084 * 118.44467 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0786 -0.7925 1.2156 5 6 3.4670 -1.2423 0.6963 6 7 3.2538 -1.5464 -0.7352 7 6 4.4459 -1.2154 -1.5273 8 6 5.5574 -2.1745 -1.1869 9 8 5.3746 -3.0475 -0.3650 10 7 6.7545 -2.0621 -1.7958 11 6 7.1088 -1.0591 -2.8107 12 6 8.5842 -1.2981 -3.1952 13 6 9.1444 -2.0682 -1.9704 14 1 9.4252 -1.3813 -1.1719 15 7 10.2802 -2.9163 -2.3561 16 6 11.5532 -2.2064 -2.1736 17 6 12.6925 -3.1056 -2.5791 18 8 12.4663 -4.2277 -2.9803 19 7 13.9629 -2.6635 -2.4951 20 6 14.9994 -3.4817 -2.8636 21 1 14.7979 -4.4807 -3.2208 22 6 16.3089 -3.0256 -2.7774 23 7 16.5541 -1.8097 -2.3432 24 14 17.7212 -4.1402 -3.2801 25 1 17.5672 -4.5213 -4.7071 26 1 19.0081 -3.4223 -3.0962 27 1 17.7109 -5.3628 -2.4374 28 6 7.9237 -2.9282 -1.5586 29 6 2.0794 -0.7898 -1.2066 30 1 -0.3633 0.4880 0.9044 31 1 -0.3633 0.5393 -0.8748 32 1 -0.3633 -1.0272 -0.0296 33 1 2.1784 -0.1481 2.0891 34 1 1.4474 -1.6529 1.4378 35 1 4.1933 -0.4374 0.8088 36 1 3.8009 -2.1331 1.2285 37 1 4.2103 -1.2943 -2.5887 38 1 4.7620 -0.1974 -1.2999 39 1 6.4715 -1.1775 -3.6871 40 1 6.9928 -0.0570 -2.3980 41 1 9.1085 -0.3517 -3.3285 42 1 8.6532 -1.9058 -4.0974 43 1 10.2736 -3.7848 -1.8426 44 1 11.5609 -1.3092 -2.7926 45 1 11.6661 -1.9262 -1.1263 46 1 14.1438 -1.7662 -2.1739 47 1 17.4684 -1.4914 -2.2828 48 1 7.9881 -3.1984 -0.5046 49 1 7.8644 -3.8233 -2.1778 50 1 1.3192 -1.4777 -1.5766 51 1 2.3754 -0.1004 -1.9973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265930966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:30 Heat of formation + Delta-G solvation = -57.941436 kcal Electronic energy + Delta-G solvation = -28759.752170 eV Core-core repulsion = 24693.881612 eV Total energy + Delta-G solvation = -4065.870558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.49593 -39.29807 -38.33215 -37.49321 -34.77108 -33.83400 -33.70495 -31.29066 -30.88888 -30.16598 -29.28209 -27.80259 -26.13786 -25.17228 -23.84554 -23.35018 -21.58421 -20.70365 -20.61789 -19.53641 -19.20647 -17.91429 -17.51818 -16.80691 -16.57191 -16.00537 -15.56871 -15.34020 -15.24411 -14.88160 -14.54492 -14.23840 -14.14442 -13.98117 -13.69963 -13.61272 -13.49055 -13.29834 -13.08372 -12.90902 -12.63922 -12.39322 -12.29183 -12.12987 -11.78646 -11.74145 -11.68135 -11.46679 -11.34429 -11.23705 -11.18153 -11.04339 -10.99427 -10.85862 -10.45149 -10.22815 -9.94849 -9.51648 -8.84196 -8.66397 -8.50891 -8.17158 -7.98138 -6.43232 -3.84231 2.46500 2.60261 3.19474 3.25317 3.29795 3.61621 3.88337 4.03955 4.06778 4.17672 4.26781 4.30726 4.40194 4.50606 4.63692 4.73911 4.88787 4.90343 4.92559 5.02472 5.04359 5.05642 5.09566 5.11518 5.21020 5.28029 5.30263 5.34380 5.44616 5.49961 5.60029 5.61809 5.67770 5.68917 5.78987 5.82133 5.83815 5.90572 5.91569 6.00828 6.07511 6.25629 6.54974 6.57559 7.12403 7.31491 7.53676 7.54628 8.02231 8.04213 8.59173 9.16131 9.52063 10.03375 10.74333 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.001522 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.469176 B =18395.374939 C =18436.464766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.046 3.954 6 N -0.513 5.513 7 C 0.038 3.962 8 C 0.529 3.471 9 O -0.521 6.521 10 N -0.620 5.620 11 C 0.101 3.899 12 C -0.123 4.123 13 C 0.073 3.927 14 H 0.061 0.939 15 N -0.655 5.655 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.107 3.893 29 C 0.046 3.954 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.354 0.646 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.343 10.216 3.548 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 H 0.092 0.908 4 C -0.165 4.165 5 C -0.081 4.081 6 N -0.238 5.238 7 C -0.094 4.094 8 C 0.316 3.684 9 O -0.396 6.396 10 N -0.356 5.356 11 C -0.023 4.023 12 C -0.161 4.161 13 C -0.039 4.039 14 H 0.079 0.921 15 N -0.289 5.289 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.016 4.016 29 C -0.081 4.081 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.607 8.686 3.058 30.053 hybrid contribution 1.300 1.125 0.846 1.916 sum -27.307 9.811 3.904 29.278 Atomic orbital electron populations 1.21724 0.94072 1.02219 1.01769 1.22388 0.96608 0.99130 0.95410 0.90752 1.22821 0.96382 0.99987 0.97261 1.23109 0.96329 1.00545 0.88126 1.63300 1.02235 1.55374 1.02842 1.22170 0.90496 0.96630 1.00079 1.20144 0.81693 0.85592 0.80924 1.90709 1.80683 1.35082 1.33148 1.48410 1.11843 1.33514 1.41843 1.22119 0.97243 0.91752 0.91176 1.22716 0.92451 1.01408 0.99546 1.22677 0.90469 0.94756 0.95961 0.92131 1.60093 1.00121 1.06549 1.62109 1.21729 0.89321 0.97466 0.99581 1.19768 0.83697 0.88692 0.85324 1.90531 1.84013 1.20823 1.51302 1.41849 1.04339 1.16207 1.57524 1.19662 0.84463 0.98371 1.40531 0.87939 1.25257 0.98725 0.96582 0.97278 1.69603 1.21684 1.16444 1.46586 0.85914 0.79454 0.79540 0.79295 1.19867 1.20975 1.19899 1.22331 0.83495 0.93855 1.01950 1.22961 0.92998 0.95545 0.96633 0.92476 0.92563 0.92181 0.90855 0.90388 0.94021 0.88967 0.87928 0.91869 0.91165 0.91568 0.90075 0.89065 0.82587 0.89511 0.93691 0.77466 0.91813 0.90428 0.90161 0.89962 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.15 37.16 0.34 -0.32 16 2 C -0.12 -0.68 3.53 -88.80 -0.31 -0.99 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.13 -0.87 6.52 -24.59 -0.16 -1.03 16 5 C 0.05 0.42 5.75 -2.27 -0.01 0.41 16 6 N -0.51 -4.85 4.86 -232.64 -1.13 -5.98 16 7 C 0.04 0.32 4.25 -4.97 -0.02 0.30 16 8 C 0.53 6.28 7.65 -10.99 -0.08 6.20 16 9 O -0.52 -8.20 15.29 5.56 0.08 -8.12 16 10 N -0.62 -6.64 3.33 -170.52 -0.57 -7.21 16 11 C 0.10 0.80 6.49 -3.06 -0.02 0.78 16 12 C -0.12 -1.18 6.65 -24.90 -0.17 -1.34 16 13 C 0.07 0.84 3.38 -65.58 -0.22 0.62 16 14 H 0.06 0.68 7.83 -51.92 -0.41 0.28 16 15 N -0.66 -9.98 6.04 -105.73 -0.64 -10.62 16 16 C 0.05 0.87 6.03 -4.98 -0.03 0.84 16 17 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 18 O -0.58 -15.61 15.78 5.55 0.09 -15.53 16 19 N -0.56 -14.05 5.29 -10.97 -0.06 -14.11 16 20 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.11 1.26 6.30 -2.54 -0.02 1.25 16 29 C 0.05 0.32 6.46 -2.83 -0.02 0.30 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.04 0.37 7.62 -51.93 -0.40 -0.03 16 36 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 37 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 38 H 0.06 0.44 7.85 -51.93 -0.41 0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.35 5.66 8.14 -39.29 -0.32 5.34 16 44 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.08 0.57 7.80 -51.93 -0.41 0.16 16 51 H 0.06 0.31 7.55 -51.93 -0.39 -0.08 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -33.18 408.93 -10.27 -43.46 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -8.86 Total: 10.46 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.05 Total: 9.13 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -1.67 Total: -61.48 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.18 -10.27 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265930966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.484 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds