Wall clock time and date at job start Tue Mar 31 2020 21:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.62545 * 2 1 4 4 C 1.55138 * 110.70765 * 123.10291 * 2 1 3 5 5 C 1.54908 * 101.68619 * 154.19455 * 4 2 1 6 6 N 1.47887 * 104.77420 * 322.97931 * 5 4 2 7 7 C 1.46907 * 111.01481 * 146.33028 * 6 5 4 8 8 C 1.50703 * 109.46783 * 69.12675 * 7 6 5 9 9 O 1.21281 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99574 * 179.97438 * 8 7 6 11 11 C 1.47025 * 125.65086 * 359.69639 * 10 8 7 12 12 C 1.54334 * 107.26258 * 178.84933 * 11 10 8 13 13 C 1.55150 * 103.02205 * 338.13513 * 12 11 10 14 14 H 1.09010 * 111.00398 * 277.23624 * 13 12 11 15 15 N 1.46903 * 111.00323 * 153.38687 * 13 12 11 16 16 C 1.46897 * 111.00088 * 92.80409 * 15 13 12 17 17 C 1.50703 * 109.47243 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99927 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00317 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00394 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99517 * 359.97438 * 20 19 17 22 22 C 1.38940 * 120.00281 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00404 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46825 * 59.99794 * 24 22 20 26 26 H 1.48496 * 109.47478 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46938 * 300.00494 * 24 22 20 28 28 C 1.47427 * 125.64446 * 179.97438 * 10 8 7 29 29 C 1.47444 * 108.58784 * 24.04325 * 6 5 4 30 30 H 1.09000 * 109.47005 * 298.35065 * 1 2 3 31 31 H 1.09000 * 109.47118 * 58.34592 * 1 2 3 32 32 H 1.08993 * 109.46977 * 178.34874 * 1 2 3 33 33 H 1.09002 * 110.99302 * 272.30456 * 4 2 1 34 34 H 1.08995 * 110.99003 * 36.08343 * 4 2 1 35 35 H 1.08993 * 110.37866 * 81.77867 * 5 4 2 36 36 H 1.09005 * 110.37455 * 204.12444 * 5 4 2 37 37 H 1.09005 * 109.46832 * 189.12286 * 7 6 5 38 38 H 1.08994 * 109.46980 * 309.12661 * 7 6 5 39 39 H 1.09000 * 109.87571 * 298.38521 * 11 10 8 40 40 H 1.08994 * 109.88544 * 59.55594 * 11 10 8 41 41 H 1.09004 * 110.84533 * 219.66915 * 12 11 10 42 42 H 1.08998 * 110.67080 * 96.52010 * 12 11 10 43 43 H 1.00897 * 110.99497 * 216.75234 * 15 13 12 44 44 H 1.09007 * 109.47211 * 299.99882 * 16 15 13 45 45 H 1.09000 * 109.47591 * 59.99870 * 16 15 13 46 46 H 0.97003 * 119.99750 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00323 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.36914 * 322.93433 * 28 10 8 49 49 H 1.09002 * 110.36230 * 85.26225 * 28 10 8 50 50 H 1.08998 * 109.89066 * 239.63908 * 29 6 5 51 51 H 1.09001 * 109.89084 * 118.44467 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0786 -0.7925 1.2156 5 6 3.4670 -1.2423 0.6963 6 7 3.2538 -1.5464 -0.7352 7 6 4.4459 -1.2154 -1.5273 8 6 5.5574 -2.1745 -1.1869 9 8 5.3746 -3.0475 -0.3650 10 7 6.7545 -2.0621 -1.7958 11 6 7.1088 -1.0591 -2.8107 12 6 8.5842 -1.2981 -3.1952 13 6 9.1444 -2.0682 -1.9704 14 1 9.4252 -1.3813 -1.1719 15 7 10.2802 -2.9163 -2.3561 16 6 11.5532 -2.2064 -2.1736 17 6 12.6925 -3.1056 -2.5791 18 8 12.4663 -4.2277 -2.9803 19 7 13.9629 -2.6635 -2.4951 20 6 14.9994 -3.4817 -2.8636 21 1 14.7979 -4.4807 -3.2208 22 6 16.3089 -3.0256 -2.7774 23 7 16.5541 -1.8097 -2.3432 24 14 17.7212 -4.1402 -3.2801 25 1 17.5672 -4.5213 -4.7071 26 1 19.0081 -3.4223 -3.0962 27 1 17.7109 -5.3628 -2.4374 28 6 7.9237 -2.9282 -1.5586 29 6 2.0794 -0.7898 -1.2066 30 1 -0.3633 0.4880 0.9044 31 1 -0.3633 0.5393 -0.8748 32 1 -0.3633 -1.0272 -0.0296 33 1 2.1784 -0.1481 2.0891 34 1 1.4474 -1.6529 1.4378 35 1 4.1933 -0.4374 0.8088 36 1 3.8009 -2.1331 1.2285 37 1 4.2103 -1.2943 -2.5887 38 1 4.7620 -0.1974 -1.2999 39 1 6.4715 -1.1775 -3.6871 40 1 6.9928 -0.0570 -2.3980 41 1 9.1085 -0.3517 -3.3285 42 1 8.6532 -1.9058 -4.0974 43 1 10.2736 -3.7848 -1.8426 44 1 11.5609 -1.3092 -2.7926 45 1 11.6661 -1.9262 -1.1263 46 1 14.1438 -1.7662 -2.1739 47 1 17.4684 -1.4914 -2.2828 48 1 7.9881 -3.1984 -0.5046 49 1 7.8644 -3.8233 -2.1778 50 1 1.3192 -1.4777 -1.5766 51 1 2.3754 -0.1004 -1.9973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265930966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:28 Heat of formation + Delta-G solvation = -83.482485 kcal Electronic energy + Delta-G solvation = -28760.859713 eV Core-core repulsion = 24693.881612 eV Total energy + Delta-G solvation = -4066.978101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.32559 -40.25442 -39.80273 -38.53467 -36.20530 -35.55336 -34.31018 -33.26817 -31.86295 -30.77678 -30.16812 -28.67087 -27.49487 -26.01721 -25.31854 -24.14290 -22.23610 -21.61066 -21.14879 -21.09043 -20.25034 -19.89016 -18.35019 -17.89420 -17.52898 -17.14688 -16.82335 -16.43961 -16.23365 -16.13059 -15.77860 -15.62360 -15.18509 -14.87375 -14.65621 -14.60876 -14.39360 -14.08105 -13.96721 -13.84130 -13.68505 -13.49106 -13.47090 -13.14943 -12.95484 -12.84316 -12.64589 -12.51481 -12.42545 -12.36294 -12.19316 -12.11624 -11.82860 -11.72167 -11.64299 -11.51866 -11.49988 -10.86145 -10.35017 -10.01300 -9.70532 -9.42287 -9.28965 -8.46330 -5.95063 1.40204 1.42427 1.52974 1.59276 1.77833 2.05730 2.29821 2.89593 3.01413 3.21072 3.29996 3.52343 3.62438 3.68291 3.72244 3.87257 3.96291 4.07546 4.20095 4.27673 4.29272 4.32198 4.33510 4.36319 4.49119 4.53243 4.58127 4.61843 4.62727 4.67213 4.77760 4.84401 4.86030 4.90224 5.04528 5.06984 5.10917 5.17505 5.19021 5.28409 5.29191 5.41356 5.47059 5.87816 5.91222 6.00737 6.08503 6.28473 6.50043 6.60449 7.12982 7.14955 7.56523 8.12047 8.70650 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.001522 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.469176 B =18395.374939 C =18436.464766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.048 3.952 6 N -0.539 5.539 7 C 0.045 3.955 8 C 0.521 3.479 9 O -0.572 6.572 10 N -0.619 5.619 11 C 0.102 3.898 12 C -0.119 4.119 13 C 0.077 3.923 14 H 0.073 0.927 15 N -0.668 5.668 16 C 0.068 3.932 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.109 3.891 29 C 0.046 3.954 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.345 0.655 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.261 12.851 2.835 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.161 4.161 5 C -0.080 4.080 6 N -0.264 5.264 7 C -0.086 4.086 8 C 0.311 3.689 9 O -0.450 6.450 10 N -0.354 5.354 11 C -0.020 4.020 12 C -0.157 4.157 13 C -0.034 4.034 14 H 0.091 0.909 15 N -0.301 5.301 16 C -0.064 4.064 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.015 4.015 29 C -0.081 4.081 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.164 0.836 44 H 0.129 0.871 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -29.537 11.380 2.327 31.739 hybrid contribution 1.548 0.265 1.070 1.901 sum -27.989 11.645 3.397 30.505 Atomic orbital electron populations 1.21702 0.93239 1.02073 1.02502 1.22371 0.97222 0.99155 0.94125 0.89739 1.22801 0.94958 1.00091 0.98287 1.22982 0.97610 0.99071 0.88323 1.63191 1.03377 1.56888 1.02952 1.22200 0.88971 0.96459 1.00977 1.20885 0.82427 0.85506 0.80089 1.90690 1.81585 1.37312 1.35423 1.48508 1.11158 1.33644 1.42083 1.22317 0.96250 0.92129 0.91307 1.22714 0.93687 1.01558 0.97748 1.22706 0.88816 0.94331 0.97499 0.90940 1.60122 1.00512 1.06812 1.62649 1.21583 0.87361 0.96419 1.01072 1.20882 0.84489 0.88836 0.83383 1.90501 1.84776 1.23067 1.52739 1.41908 1.04712 1.16194 1.58089 1.19630 0.86114 0.98249 1.42594 0.90391 1.26000 1.00395 0.97944 0.96691 1.69658 1.22522 1.17307 1.46472 0.85013 0.76851 0.77852 0.78773 1.19736 1.19436 1.19835 1.22163 0.84645 0.93942 1.00781 1.23003 0.91922 0.95697 0.97456 0.91986 0.91571 0.92809 0.89750 0.91218 0.93738 0.92361 0.85790 0.89472 0.89106 0.88745 0.88213 0.90453 0.83578 0.87136 0.91488 0.76894 0.91284 0.91869 0.91669 0.90385 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.15 71.98 0.66 -0.37 16 2 C -0.11 -1.05 3.53 -9.61 -0.03 -1.08 16 3 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.12 -1.59 6.52 31.98 0.21 -1.39 16 5 C 0.05 0.87 5.75 86.77 0.50 1.37 16 6 N -0.54 -9.60 4.86 -889.95 -4.33 -13.93 16 7 C 0.04 0.66 4.25 85.56 0.36 1.03 16 8 C 0.52 12.03 7.65 87.66 0.67 12.70 16 9 O -0.57 -18.67 15.29 -3.03 -0.05 -18.72 16 10 N -0.62 -12.40 3.33 -811.80 -2.70 -15.10 16 11 C 0.10 1.27 6.49 86.73 0.56 1.83 16 12 C -0.12 -1.96 6.65 31.78 0.21 -1.74 16 13 C 0.08 1.67 3.38 46.30 0.16 1.83 16 14 H 0.07 1.45 7.83 -2.38 -0.02 1.43 16 15 N -0.67 -19.98 6.04 -488.42 -2.95 -22.93 16 16 C 0.07 2.19 6.03 85.56 0.52 2.71 16 17 C 0.44 20.36 7.82 87.66 0.69 21.04 16 18 O -0.62 -34.38 15.78 -3.05 -0.05 -34.43 16 19 N -0.57 -28.88 5.29 -307.00 -1.62 -30.51 16 20 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 23 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 24 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 C 0.11 2.57 6.30 86.85 0.55 3.12 16 29 C 0.05 0.53 6.46 86.65 0.56 1.09 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.47 8.10 -2.39 -0.02 0.45 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.00 8.05 -2.39 -0.02 0.98 16 35 H 0.04 0.75 7.62 -2.39 -0.02 0.74 16 36 H 0.06 1.44 7.38 -2.38 -0.02 1.42 16 37 H 0.12 1.29 8.03 -2.38 -0.02 1.27 16 38 H 0.09 0.89 7.85 -2.39 -0.02 0.87 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 1.31 8.14 -2.38 -0.02 1.30 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.35 11.28 8.14 -89.70 -0.73 10.55 16 44 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 45 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 46 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 47 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 48 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 49 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.08 0.96 7.80 -2.39 -0.02 0.94 16 51 H 0.07 0.57 7.55 -2.39 -0.02 0.56 16 Total: -1.00 -74.69 408.93 -3.03 -77.72 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.53 Total: 38.00 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 6.89 Total: 23.87 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -11.32 Total: -131.16 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.09 Total: -53.15 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.69 -3.03 -77.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265930966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.760 kcal (2) G-P(sol) polarization free energy of solvation -74.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds