Wall clock time and date at job start Tue Mar 31 2020 22:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47086 * 2 1 4 4 N 1.46503 * 109.47200 * 239.99917 * 2 1 3 5 5 C 1.36939 * 119.99792 * 76.81514 * 4 2 1 6 6 H 1.08001 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99800 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47244 * 89.99625 * 9 7 5 11 11 H 1.48500 * 109.47149 * 210.00017 * 9 7 5 12 12 H 1.48498 * 109.46956 * 329.99909 * 9 7 5 13 13 C 1.53000 * 109.46790 * 119.99963 * 2 1 3 14 14 H 1.08995 * 109.70185 * 72.24588 * 13 2 1 15 15 C 1.53192 * 109.58659 * 311.88853 * 13 2 1 16 16 C 1.53040 * 109.30922 * 185.57873 * 15 13 2 17 17 C 1.53044 * 109.53882 * 61.36905 * 16 15 13 18 18 C 1.53192 * 109.31200 * 298.62898 * 17 16 15 19 19 N 1.46930 * 108.77297 * 54.63720 * 18 17 16 20 20 C 1.34773 * 120.63071 * 126.36818 * 19 18 17 21 21 O 1.21287 * 119.99701 * 175.12401 * 20 19 18 22 22 C 1.50697 * 120.00286 * 355.12563 * 20 19 18 23 23 N 1.46495 * 109.47213 * 180.02562 * 22 20 19 24 24 C 1.46382 * 119.32784 * 269.72246 * 23 22 20 25 25 C 1.53505 * 109.01025 * 150.82777 * 24 23 22 26 26 C 1.53234 * 108.42940 * 55.79306 * 25 24 23 27 27 N 1.46383 * 109.15539 * 304.37895 * 26 25 24 28 28 C 1.34134 * 121.33647 * 29.06447 * 27 26 25 29 29 O 1.21593 * 118.69650 * 179.40790 * 28 27 26 30 30 H 1.09005 * 109.46596 * 66.21815 * 1 2 3 31 31 H 1.08998 * 109.47027 * 186.21334 * 1 2 3 32 32 H 1.08997 * 109.47244 * 306.21764 * 1 2 3 33 33 H 0.96994 * 119.99591 * 256.81942 * 4 2 1 34 34 H 0.97001 * 119.99949 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.49795 * 65.62889 * 15 13 2 36 36 H 1.08997 * 109.49722 * 305.52753 * 15 13 2 37 37 H 1.09001 * 109.46211 * 301.34625 * 16 15 13 38 38 H 1.09000 * 109.46035 * 181.38713 * 16 15 13 39 39 H 1.08993 * 109.49884 * 58.58287 * 17 16 15 40 40 H 1.09003 * 109.49712 * 178.68535 * 17 16 15 41 41 H 1.08992 * 109.58517 * 174.41939 * 18 17 16 42 42 H 1.08993 * 109.58919 * 294.85411 * 18 17 16 43 43 H 1.09002 * 109.47181 * 300.00415 * 22 20 19 44 44 H 1.09004 * 109.46836 * 59.99576 * 22 20 19 45 45 H 1.09000 * 109.52582 * 270.86727 * 24 23 22 46 46 H 1.09005 * 109.52416 * 31.06986 * 24 23 22 47 47 H 1.09002 * 109.80179 * 296.04263 * 25 24 23 48 48 H 1.08999 * 109.56950 * 175.40504 * 25 24 23 49 49 H 1.08996 * 109.52371 * 184.47790 * 26 25 24 50 50 H 1.09000 * 109.57800 * 64.31850 * 26 25 24 51 51 H 0.96998 * 119.32965 * 209.03386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.9916 -0.0585 -2.4106 6 1 1.6108 0.9493 -2.4866 7 6 2.4538 -0.7131 -3.5441 8 7 2.9183 -1.9411 -3.4514 9 14 2.4179 0.1494 -5.2007 10 1 3.6940 0.8808 -5.4057 11 1 2.2453 -0.8568 -6.2790 12 1 1.2860 1.1100 -5.2341 13 6 2.0400 -0.7213 1.2493 14 1 1.8674 -1.7930 1.1510 15 6 1.3026 -0.1934 2.4839 16 6 1.9122 -0.8159 3.7421 17 6 3.3848 -0.4135 3.8503 18 6 4.1458 -0.9438 2.6311 19 7 3.4778 -0.4668 1.4125 20 6 4.1707 0.1921 0.4626 21 8 3.6292 0.5030 -0.5772 22 6 5.6183 0.5425 0.6924 23 7 6.1411 1.2508 -0.4785 24 6 6.7539 0.4850 -1.5652 25 6 6.5534 1.2422 -2.8854 26 6 7.1292 2.6533 -2.7268 27 7 6.5008 3.3018 -1.5747 28 6 6.0537 2.5883 -0.5306 29 8 5.5494 3.1773 0.4061 30 1 -0.3633 0.4144 -0.9405 31 1 -0.3633 -1.0216 0.1112 32 1 -0.3633 0.6072 0.8291 33 1 2.3606 -1.5956 -1.1278 34 1 3.2410 -2.3987 -4.2435 35 1 0.2479 -0.4612 2.4199 36 1 1.4009 0.8911 2.5304 37 1 1.8359 -1.9017 3.6836 38 1 1.3733 -0.4610 4.6205 39 1 3.4635 0.6731 3.8838 40 1 3.8122 -0.8380 4.7587 41 1 5.1719 -0.5767 2.6528 42 1 4.1450 -2.0336 2.6454 43 1 5.7022 1.1821 1.5710 44 1 6.1922 -0.3704 0.8516 45 1 7.8192 0.3633 -1.3694 46 1 6.2805 -0.4946 -1.6325 47 1 5.4902 1.3046 -3.1174 48 1 7.0760 0.7216 -3.6878 49 1 6.9256 3.2331 -3.6270 50 1 8.2059 2.5928 -2.5683 51 1 6.4063 4.2671 -1.5659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266002457.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:41 Heat of formation + Delta-G solvation = -0.874152 kcal Electronic energy + Delta-G solvation = -33149.908217 eV Core-core repulsion = 29086.512282 eV Total energy + Delta-G solvation = -4063.395935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.54925 -39.67831 -36.81288 -36.07958 -35.37062 -34.25974 -32.48898 -32.13039 -30.71672 -29.79675 -28.07539 -27.62317 -25.39665 -24.45885 -24.15871 -22.82642 -22.48800 -20.63794 -19.92596 -19.03191 -18.41637 -17.24970 -16.92518 -16.79456 -16.37031 -15.52334 -15.25980 -14.88682 -14.56225 -14.31258 -14.13744 -14.03717 -13.72618 -13.60056 -13.47258 -13.39843 -13.11324 -12.87005 -12.59287 -12.49373 -12.08656 -11.93456 -11.83330 -11.33043 -11.27171 -11.14080 -11.08043 -11.01170 -10.83585 -10.74611 -10.61184 -10.52006 -10.35504 -10.08046 -9.77585 -9.63931 -9.38638 -8.89824 -8.71711 -8.59682 -7.94390 -7.78402 -6.41718 -5.45621 -2.64570 2.88296 3.45806 3.53216 3.57794 3.60378 3.62445 3.69179 4.06542 4.80598 4.86554 4.89342 4.95469 5.00985 5.06285 5.22947 5.28511 5.32251 5.35494 5.50737 5.53242 5.55077 5.59171 5.67506 5.71305 5.82168 5.83254 5.88833 5.95550 5.99299 6.03536 6.09960 6.18417 6.22100 6.22984 6.43649 6.48455 6.53465 6.56543 6.58954 6.83838 6.88348 7.04426 7.14105 7.30479 7.48153 7.98154 8.09637 8.13419 8.71439 8.88981 9.19503 9.83503 10.41584 10.78296 11.78906 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008774 B = 0.006634 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.598840 B = 4219.490152 C = 6480.834139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.182 3.818 3 H 0.059 0.941 4 N -0.689 5.689 5 C -0.167 4.167 6 H 0.059 0.941 7 C -0.028 4.028 8 N -0.946 5.946 9 Si 0.892 3.108 10 H -0.297 1.297 11 H -0.298 1.298 12 H -0.289 1.289 13 C 0.150 3.850 14 H 0.062 0.938 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.135 4.135 18 C 0.113 3.887 19 N -0.617 5.617 20 C 0.455 3.545 21 O -0.419 6.419 22 C 0.117 3.883 23 N -0.598 5.598 24 C 0.122 3.878 25 C -0.153 4.153 26 C 0.113 3.887 27 N -0.737 5.737 28 C 0.720 3.280 29 O -0.606 6.606 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.376 0.624 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 2.817 11.855 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.073 3.927 3 H 0.076 0.924 4 N -0.329 5.329 5 C -0.299 4.299 6 H 0.077 0.923 7 C -0.221 4.221 8 N -0.599 5.599 9 Si 0.726 3.274 10 H -0.226 1.226 11 H -0.225 1.225 12 H -0.215 1.215 13 C 0.046 3.954 14 H 0.080 0.920 15 C -0.167 4.167 16 C -0.155 4.155 17 C -0.173 4.173 18 C -0.011 4.011 19 N -0.356 5.356 20 C 0.238 3.762 21 O -0.284 6.284 22 C -0.011 4.011 23 N -0.333 5.333 24 C -0.001 4.001 25 C -0.192 4.192 26 C -0.011 4.011 27 N -0.395 5.395 28 C 0.421 3.579 29 O -0.485 6.485 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.209 0.791 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.136 3.254 11.531 14.482 hybrid contribution 0.180 0.320 -1.079 1.139 sum 8.316 3.575 10.452 13.827 Atomic orbital electron populations 1.22561 0.99914 1.00011 1.00332 1.20374 0.90250 0.96833 0.85288 0.92376 1.42222 1.73420 1.14933 1.02328 1.18991 1.29873 0.96352 0.84710 0.92339 1.24453 1.04063 0.96744 0.96856 1.69644 1.51151 1.11765 1.27330 0.86357 0.77288 0.78139 0.85599 1.22572 1.22509 1.21512 1.21461 0.79355 0.99181 0.95388 0.91977 1.22014 0.99663 1.00902 0.94170 1.21501 0.95497 1.00591 0.97908 1.21921 0.96155 1.01651 0.97609 1.21559 0.96123 0.98730 0.84704 1.47937 1.08887 1.59155 1.19625 1.21065 0.89042 0.81486 0.84629 1.91274 1.67433 1.46755 1.22954 1.21186 0.93470 0.97318 0.89077 1.46251 1.62203 1.04052 1.20839 1.21549 0.96471 0.96505 0.85579 1.22217 1.04647 0.94721 0.97581 1.21505 0.96319 0.94555 0.88767 1.44839 1.65806 1.10037 1.18787 1.15275 0.78386 0.81665 0.82545 1.90902 1.51483 1.68956 1.37204 0.92637 0.93946 0.94556 0.79063 0.94499 0.90830 0.91714 0.92048 0.92246 0.91541 0.91426 0.90590 0.92032 0.87962 0.89069 0.92473 0.89310 0.88790 0.89144 0.90378 0.92330 0.75330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 8.48 37.16 0.32 -2.93 16 2 C 0.18 3.88 1.83 -67.93 -0.12 3.76 16 3 H 0.06 1.42 6.39 -51.93 -0.33 1.09 16 4 N -0.69 -17.62 3.26 -53.42 -0.17 -17.79 16 5 C -0.17 -4.78 8.07 -15.06 -0.12 -4.90 16 6 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.03 -0.83 5.50 -17.43 -0.10 -0.93 16 8 N -0.95 -28.77 13.06 55.49 0.72 -28.04 16 9 Si 0.89 23.36 29.55 -169.99 -5.02 18.34 16 10 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 13 C 0.15 2.57 2.62 -67.60 -0.18 2.39 16 14 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 15 C -0.13 -1.78 4.45 -26.61 -0.12 -1.89 16 16 C -0.12 -1.29 5.88 -26.69 -0.16 -1.45 16 17 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 18 C 0.11 1.33 6.35 -3.71 -0.02 1.30 16 19 N -0.62 -10.03 2.97 -165.22 -0.49 -10.52 16 20 C 0.46 8.68 7.49 -10.99 -0.08 8.60 16 21 O -0.42 -9.95 9.22 5.55 0.05 -9.90 16 22 C 0.12 1.84 4.15 -5.20 -0.02 1.82 16 23 N -0.60 -10.04 2.30 -180.99 -0.42 -10.46 16 24 C 0.12 1.81 6.50 -3.84 -0.02 1.78 16 25 C -0.15 -2.28 6.21 -26.35 -0.16 -2.44 16 26 C 0.11 1.37 7.20 -3.98 -0.03 1.34 16 27 N -0.74 -10.91 5.58 -65.53 -0.37 -11.28 16 28 C 0.72 13.17 8.17 -88.07 -0.72 12.45 16 29 O -0.61 -12.96 16.49 5.28 0.09 -12.88 16 30 H 0.05 1.19 7.95 -51.93 -0.41 0.78 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.60 6.85 -51.93 -0.36 0.24 16 33 H 0.38 10.36 7.70 -40.82 -0.31 10.05 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 0.97 6.83 -51.93 -0.35 0.61 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.57 7.04 -51.93 -0.37 1.20 16 44 H 0.09 1.14 7.66 -51.93 -0.40 0.75 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 47 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.41 5.38 8.88 -40.82 -0.36 5.02 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -35.82 388.01 -10.13 -45.95 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -8.66 Total: 13.40 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: -1.71 Total: 17.33 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -0.72 Total: -78.09 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.14 Total: -22.77 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.82 -10.13 -45.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002457.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.073 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds