Wall clock time and date at job start Tue Mar 31 2020 21:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.06046 * 2 1 4 4 C 1.53988 * 109.91882 * 238.79542 * 2 1 3 5 5 H 1.08993 * 110.39175 * 120.46174 * 4 2 1 6 6 C 1.50705 * 110.30937 * 358.33871 * 4 2 1 7 7 O 1.21274 * 120.00221 * 275.86993 * 6 4 2 8 8 N 1.34781 * 119.99933 * 95.86502 * 6 4 2 9 9 C 1.46501 * 119.99763 * 179.97438 * 8 6 4 10 10 H 1.08996 * 110.77053 * 328.20633 * 9 8 6 11 11 C 1.55401 * 110.84232 * 91.47225 * 9 8 6 12 12 C 1.54908 * 101.74054 * 153.85978 * 11 9 8 13 13 N 1.47847 * 104.79565 * 323.01615 * 12 11 9 14 14 C 1.46902 * 110.99711 * 146.36289 * 13 12 11 15 15 C 1.50700 * 109.46953 * 69.15791 * 14 13 12 16 16 O 1.21300 * 120.00123 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00031 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99973 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00292 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99925 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99806 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00130 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46890 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47298 * 120.00136 * 22 20 18 25 25 H 1.48505 * 109.47086 * 240.00502 * 22 20 18 26 26 C 1.47439 * 108.56670 * 24.09923 * 13 12 11 27 27 C 1.54589 * 105.14049 * 239.42490 * 4 2 1 28 28 C 1.54933 * 102.92113 * 338.04029 * 27 4 2 29 29 N 1.47903 * 109.91404 * 121.20693 * 2 1 3 30 30 C 1.46906 * 110.99542 * 265.19855 * 29 2 1 31 31 H 1.09002 * 109.47074 * 183.75776 * 1 2 3 32 32 H 1.08993 * 109.47524 * 303.76267 * 1 2 3 33 33 H 1.09009 * 109.46743 * 63.76373 * 1 2 3 34 34 H 0.97001 * 119.99664 * 0.02562 * 8 6 4 35 35 H 1.09001 * 110.87237 * 35.76885 * 11 9 8 36 36 H 1.09000 * 111.05500 * 272.02855 * 11 9 8 37 37 H 1.09000 * 110.37189 * 204.18517 * 12 11 9 38 38 H 1.08997 * 110.37473 * 81.84606 * 12 11 9 39 39 H 1.09000 * 109.46462 * 189.15237 * 14 13 12 40 40 H 1.08995 * 109.47324 * 309.15461 * 14 13 12 41 41 H 0.96996 * 119.99753 * 359.97438 * 17 15 14 42 42 H 0.97000 * 119.99716 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.89254 * 118.41892 * 26 13 12 44 44 H 1.09009 * 109.88629 * 239.43884 * 26 13 12 45 45 H 1.09006 * 110.72745 * 96.40350 * 27 4 2 46 46 H 1.09004 * 110.72473 * 219.50984 * 27 4 2 47 47 H 1.09007 * 110.66748 * 155.85122 * 28 27 4 48 48 H 1.08999 * 110.67082 * 278.98133 * 28 27 4 49 49 H 1.08999 * 109.46821 * 302.72957 * 30 29 2 50 50 H 1.08993 * 109.47362 * 62.73279 * 30 29 2 51 51 H 1.09006 * 109.46764 * 182.73140 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2383 5 1 2.6710 -0.0904 -1.8490 6 6 0.9046 -1.2893 -2.0494 7 8 0.4010 -2.3525 -1.7552 8 7 0.4357 -0.5898 -3.1017 9 6 -0.6818 -1.1142 -3.8905 10 1 -0.6637 -2.2039 -3.9096 11 6 -2.0392 -0.5976 -3.3377 12 6 -2.9363 -0.6564 -4.5993 13 7 -2.0477 -0.2618 -5.7131 14 6 -2.4032 -0.9740 -6.9478 15 6 -3.7357 -0.4784 -7.4476 16 8 -4.3309 0.3830 -6.8353 17 7 -4.2660 -0.9923 -8.5751 18 6 -5.4785 -0.5418 -9.0295 19 1 -6.0085 0.2252 -8.4843 20 6 -6.0250 -1.0713 -10.1921 21 7 -5.3799 -2.0042 -10.8558 22 14 -7.6767 -0.4570 -10.8118 23 1 -8.1935 0.5872 -9.8911 24 1 -7.5128 0.1180 -12.1710 25 1 -8.6372 -1.5883 -10.8653 26 6 -0.6537 -0.5428 -5.3237 27 6 2.9059 -1.9117 -0.6762 28 6 3.2681 -1.4185 0.7472 29 7 2.0338 -0.7205 1.1894 30 6 2.3210 0.2123 2.2873 31 1 -0.3633 -1.0255 0.0674 32 1 -0.3634 0.5711 0.8543 33 1 -0.3633 0.4543 -0.9219 34 1 0.8388 0.2605 -3.3372 35 1 -1.9458 0.4251 -2.9723 36 1 -2.4200 -1.2558 -2.5568 37 1 -3.7654 0.0453 -4.5084 38 1 -3.3099 -1.6688 -4.7524 39 1 -1.6404 -0.7916 -7.7048 40 1 -2.4658 -2.0432 -6.7453 41 1 -3.7899 -1.6809 -9.0649 42 1 -5.7616 -2.3741 -11.6672 43 1 -0.2182 -1.2732 -6.0056 44 1 -0.0701 0.3777 -5.3446 45 1 2.3214 -2.8306 -0.6290 46 1 3.8037 -2.0577 -1.2768 47 1 3.4888 -2.2616 1.4019 48 1 4.1097 -0.7267 0.7121 49 1 3.0410 0.9584 1.9512 50 1 1.3999 0.7081 2.5932 51 1 2.7355 -0.3377 3.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266321570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:29 Heat of formation + Delta-G solvation = -53.819980 kcal Electronic energy + Delta-G solvation = -29725.268905 eV Core-core repulsion = 25659.577066 eV Total energy + Delta-G solvation = -4065.691838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.91275 -39.36538 -38.32704 -37.37985 -34.52144 -33.79669 -32.79881 -31.77926 -31.31715 -30.74586 -28.58328 -27.14413 -26.21725 -25.28718 -24.19223 -22.68525 -21.39978 -21.08092 -20.84569 -19.77965 -19.18944 -17.86923 -17.45255 -16.74194 -16.42645 -15.81851 -15.62337 -15.50348 -15.04286 -14.89973 -14.51763 -14.44409 -14.13923 -13.80798 -13.69697 -13.56026 -13.06493 -12.95260 -12.92605 -12.68903 -12.53825 -12.26400 -12.10071 -11.92231 -11.78390 -11.67029 -11.53856 -11.49524 -11.43365 -11.26798 -11.13873 -11.10533 -10.96347 -10.71694 -10.33039 -10.20820 -9.92587 -9.49159 -9.18117 -8.87854 -8.45156 -7.96285 -7.89187 -6.39982 -3.80592 2.41117 2.89451 3.17542 3.27957 3.35215 3.50961 3.92767 4.01813 4.12209 4.13198 4.25657 4.42184 4.56338 4.74087 4.76950 4.84005 4.85335 4.95026 4.96958 4.99972 5.04923 5.17681 5.25552 5.27105 5.36234 5.39118 5.40466 5.41863 5.47757 5.55654 5.61672 5.65166 5.74764 5.81106 5.85228 5.89329 5.97619 6.05908 6.14292 6.30039 6.36066 6.45112 6.48370 6.60400 7.20200 7.20691 7.31409 7.57125 8.04439 8.08391 8.63952 9.20323 9.56696 10.08650 10.77951 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.038802 B = 0.001795 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.446695 B =15597.698322 C =15966.183943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.060 0.940 4 C -0.119 4.119 5 H 0.093 0.907 6 C 0.531 3.469 7 O -0.531 6.531 8 N -0.720 5.720 9 C 0.123 3.877 10 H 0.096 0.904 11 C -0.139 4.139 12 C 0.054 3.946 13 N -0.501 5.501 14 C 0.039 3.961 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.037 3.963 27 C -0.112 4.112 28 C 0.036 3.964 29 N -0.515 5.515 30 C 0.016 3.984 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.400 0.600 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.392 0.608 42 H 0.270 0.730 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.027 0.973 50 H 0.070 0.930 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.370 2.093 20.515 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 H 0.078 0.922 4 C -0.141 4.141 5 H 0.111 0.889 6 C 0.317 3.683 7 O -0.407 6.407 8 N -0.372 5.372 9 C 0.017 3.983 10 H 0.114 0.886 11 C -0.178 4.178 12 C -0.074 4.074 13 N -0.225 5.225 14 C -0.093 4.093 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.092 4.092 27 C -0.150 4.150 28 C -0.092 4.092 29 N -0.239 5.239 30 C -0.133 4.133 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.084 1.975 21.052 28.483 hybrid contribution 0.438 0.053 -1.073 1.160 sum 19.521 2.028 19.979 28.007 Atomic orbital electron populations 1.21975 0.93265 1.03828 1.01721 1.22247 0.97016 0.95366 0.88194 0.92195 1.22268 0.96038 0.99158 0.96686 0.88874 1.20180 0.83854 0.84434 0.79879 1.90706 1.59437 1.22351 1.68173 1.46055 1.35623 1.24543 1.30933 1.22297 0.85869 0.99518 0.90610 0.88556 1.23184 0.94494 1.01920 0.98186 1.23012 0.96332 1.00225 0.87830 1.63293 1.00579 1.55758 1.02911 1.22145 0.98200 0.95964 0.92948 1.19711 0.87429 0.86229 0.83611 1.90510 1.63066 1.33992 1.58496 1.41865 1.19784 1.36546 1.22126 1.19745 0.95671 1.20273 1.06976 0.87875 1.25258 0.99873 0.96444 0.96458 1.69622 1.39234 1.27502 1.18051 0.85804 0.81356 0.78619 0.78590 1.19238 1.20781 1.20806 1.23077 0.92041 1.00216 0.93855 1.22517 0.99166 0.98521 0.94828 1.23241 0.91169 0.98551 0.96210 1.64711 1.26595 1.26301 1.06314 1.22531 1.00859 0.95096 0.94792 0.90573 0.92422 0.91913 0.76495 0.90491 0.90603 0.88482 0.93702 0.89346 0.93179 0.77536 0.91972 0.92073 0.90226 0.88601 0.90581 0.89557 0.93617 0.95399 0.91163 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.37 37.16 0.31 -1.08 16 2 C 0.08 0.63 3.09 -66.64 -0.21 0.43 16 3 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 4 C -0.12 -0.91 3.37 -90.42 -0.31 -1.22 16 5 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 6 C 0.53 5.46 4.73 -10.98 -0.05 5.41 16 7 O -0.53 -7.59 14.56 5.56 0.08 -7.51 16 8 N -0.72 -6.46 4.79 -51.90 -0.25 -6.71 16 9 C 0.12 1.39 3.32 -65.96 -0.22 1.17 16 10 H 0.10 1.24 7.55 -51.93 -0.39 0.85 16 11 C -0.14 -1.74 6.77 -24.45 -0.17 -1.90 16 12 C 0.05 0.85 5.75 -2.30 -0.01 0.84 16 13 N -0.50 -8.11 4.86 -232.69 -1.13 -9.24 16 14 C 0.04 0.69 5.05 -4.97 -0.03 0.67 16 15 C 0.45 10.50 7.58 -10.99 -0.08 10.41 16 16 O -0.58 -15.54 14.61 5.54 0.08 -15.46 16 17 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 22 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.04 0.44 6.61 -2.84 -0.02 0.42 16 27 C -0.11 -0.86 6.56 -24.88 -0.16 -1.02 16 28 C 0.04 0.24 6.56 -1.90 -0.01 0.23 16 29 N -0.51 -4.22 5.18 -230.78 -1.20 -5.42 16 30 C 0.02 0.10 9.41 60.07 0.57 0.66 16 31 H 0.08 0.91 6.99 -51.93 -0.36 0.55 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.57 7.13 -51.92 -0.37 0.20 16 34 H 0.40 2.59 8.37 -40.82 -0.34 2.25 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.79 7.38 -51.93 -0.38 1.41 16 38 H 0.04 0.73 7.62 -51.93 -0.40 0.34 16 39 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 40 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.06 0.68 7.55 -51.93 -0.39 0.29 16 44 H 0.08 0.83 7.72 -51.92 -0.40 0.43 16 45 H 0.10 0.97 6.93 -51.93 -0.36 0.61 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 48 H 0.05 0.26 8.00 -51.93 -0.42 -0.16 16 49 H 0.03 0.15 7.99 -51.93 -0.41 -0.27 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -33.32 400.84 -10.03 -43.34 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.67 Total: 10.15 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.63 Total: 7.05 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -1.91 Total: -59.73 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.16 Total: -22.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.32 -10.03 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266321570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.478 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds