Wall clock time and date at job start Tue Mar 31 2020 21:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.06046 * 2 1 4 4 C 1.53988 * 109.91882 * 238.79542 * 2 1 3 5 5 H 1.08993 * 110.39175 * 120.46174 * 4 2 1 6 6 C 1.50705 * 110.30937 * 358.33871 * 4 2 1 7 7 O 1.21274 * 120.00221 * 275.86993 * 6 4 2 8 8 N 1.34781 * 119.99933 * 95.86502 * 6 4 2 9 9 C 1.46501 * 119.99763 * 179.97438 * 8 6 4 10 10 H 1.08996 * 110.77053 * 328.20633 * 9 8 6 11 11 C 1.55401 * 110.84232 * 91.47225 * 9 8 6 12 12 C 1.54908 * 101.74054 * 153.85978 * 11 9 8 13 13 N 1.47847 * 104.79565 * 323.01615 * 12 11 9 14 14 C 1.46902 * 110.99711 * 146.36289 * 13 12 11 15 15 C 1.50700 * 109.46953 * 69.15791 * 14 13 12 16 16 O 1.21300 * 120.00123 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00031 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99973 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00292 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99925 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99806 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00130 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46890 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47298 * 120.00136 * 22 20 18 25 25 H 1.48505 * 109.47086 * 240.00502 * 22 20 18 26 26 C 1.47439 * 108.56670 * 24.09923 * 13 12 11 27 27 C 1.54589 * 105.14049 * 239.42490 * 4 2 1 28 28 C 1.54933 * 102.92113 * 338.04029 * 27 4 2 29 29 N 1.47903 * 109.91404 * 121.20693 * 2 1 3 30 30 C 1.46906 * 110.99542 * 265.19855 * 29 2 1 31 31 H 1.09002 * 109.47074 * 183.75776 * 1 2 3 32 32 H 1.08993 * 109.47524 * 303.76267 * 1 2 3 33 33 H 1.09009 * 109.46743 * 63.76373 * 1 2 3 34 34 H 0.97001 * 119.99664 * 0.02562 * 8 6 4 35 35 H 1.09001 * 110.87237 * 35.76885 * 11 9 8 36 36 H 1.09000 * 111.05500 * 272.02855 * 11 9 8 37 37 H 1.09000 * 110.37189 * 204.18517 * 12 11 9 38 38 H 1.08997 * 110.37473 * 81.84606 * 12 11 9 39 39 H 1.09000 * 109.46462 * 189.15237 * 14 13 12 40 40 H 1.08995 * 109.47324 * 309.15461 * 14 13 12 41 41 H 0.96996 * 119.99753 * 359.97438 * 17 15 14 42 42 H 0.97000 * 119.99716 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.89254 * 118.41892 * 26 13 12 44 44 H 1.09009 * 109.88629 * 239.43884 * 26 13 12 45 45 H 1.09006 * 110.72745 * 96.40350 * 27 4 2 46 46 H 1.09004 * 110.72473 * 219.50984 * 27 4 2 47 47 H 1.09007 * 110.66748 * 155.85122 * 28 27 4 48 48 H 1.08999 * 110.67082 * 278.98133 * 28 27 4 49 49 H 1.08999 * 109.46821 * 302.72957 * 30 29 2 50 50 H 1.08993 * 109.47362 * 62.73279 * 30 29 2 51 51 H 1.09006 * 109.46764 * 182.73140 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2383 5 1 2.6710 -0.0904 -1.8490 6 6 0.9046 -1.2893 -2.0494 7 8 0.4010 -2.3525 -1.7552 8 7 0.4357 -0.5898 -3.1017 9 6 -0.6818 -1.1142 -3.8905 10 1 -0.6637 -2.2039 -3.9096 11 6 -2.0392 -0.5976 -3.3377 12 6 -2.9363 -0.6564 -4.5993 13 7 -2.0477 -0.2618 -5.7131 14 6 -2.4032 -0.9740 -6.9478 15 6 -3.7357 -0.4784 -7.4476 16 8 -4.3309 0.3830 -6.8353 17 7 -4.2660 -0.9923 -8.5751 18 6 -5.4785 -0.5418 -9.0295 19 1 -6.0085 0.2252 -8.4843 20 6 -6.0250 -1.0713 -10.1921 21 7 -5.3799 -2.0042 -10.8558 22 14 -7.6767 -0.4570 -10.8118 23 1 -8.1935 0.5872 -9.8911 24 1 -7.5128 0.1180 -12.1710 25 1 -8.6372 -1.5883 -10.8653 26 6 -0.6537 -0.5428 -5.3237 27 6 2.9059 -1.9117 -0.6762 28 6 3.2681 -1.4185 0.7472 29 7 2.0338 -0.7205 1.1894 30 6 2.3210 0.2123 2.2873 31 1 -0.3633 -1.0255 0.0674 32 1 -0.3634 0.5711 0.8543 33 1 -0.3633 0.4543 -0.9219 34 1 0.8388 0.2605 -3.3372 35 1 -1.9458 0.4251 -2.9723 36 1 -2.4200 -1.2558 -2.5568 37 1 -3.7654 0.0453 -4.5084 38 1 -3.3099 -1.6688 -4.7524 39 1 -1.6404 -0.7916 -7.7048 40 1 -2.4658 -2.0432 -6.7453 41 1 -3.7899 -1.6809 -9.0649 42 1 -5.7616 -2.3741 -11.6672 43 1 -0.2182 -1.2732 -6.0056 44 1 -0.0701 0.3777 -5.3446 45 1 2.3214 -2.8306 -0.6290 46 1 3.8037 -2.0577 -1.2768 47 1 3.4888 -2.2616 1.4019 48 1 4.1097 -0.7267 0.7121 49 1 3.0410 0.9584 1.9512 50 1 1.3999 0.7081 2.5932 51 1 2.7355 -0.3377 3.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266321570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:28 Heat of formation + Delta-G solvation = -80.813349 kcal Electronic energy + Delta-G solvation = -29726.439425 eV Core-core repulsion = 25659.577066 eV Total energy + Delta-G solvation = -4066.862359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68486 -40.61915 -39.52598 -38.64719 -36.00385 -35.35746 -33.47140 -33.25884 -32.41023 -31.98090 -29.65083 -28.31282 -27.28089 -25.95319 -25.84843 -23.46603 -22.37158 -21.95704 -21.79043 -20.99206 -20.51487 -19.87998 -18.25205 -17.78674 -17.49002 -17.03699 -16.82131 -16.41695 -16.19884 -16.08791 -15.72960 -15.57207 -15.52621 -15.11243 -14.75253 -14.43629 -14.36500 -14.11634 -13.78452 -13.53971 -13.47923 -13.35739 -13.28990 -13.08406 -12.97333 -12.79230 -12.67586 -12.62956 -12.39831 -12.25048 -12.22527 -12.11534 -12.10750 -11.89883 -11.86822 -11.68566 -11.48808 -10.78169 -10.32862 -10.04299 -9.99581 -9.38402 -9.25742 -8.45994 -5.94371 1.36679 1.41709 1.55871 1.61967 2.06519 2.08969 2.29822 2.82537 2.99759 3.20696 3.33290 3.49981 3.53991 3.61599 3.71902 3.88090 4.03648 4.17658 4.24615 4.27137 4.31955 4.32983 4.35706 4.44071 4.45733 4.50641 4.51213 4.52349 4.67401 4.71874 4.77404 4.82854 4.83986 4.90182 4.97179 5.02359 5.03056 5.06432 5.12113 5.24539 5.32174 5.41906 5.52459 5.84533 5.92991 5.98436 6.10229 6.11109 6.58380 6.61879 7.14247 7.29087 7.57806 8.13872 8.71714 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.038802 B = 0.001795 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.446695 B =15597.698322 C =15966.183943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.082 0.918 4 C -0.115 4.115 5 H 0.128 0.872 6 C 0.530 3.470 7 O -0.576 6.576 8 N -0.706 5.706 9 C 0.135 3.865 10 H 0.082 0.918 11 C -0.126 4.126 12 C 0.055 3.945 13 N -0.519 5.519 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.042 3.958 27 C -0.113 4.113 28 C 0.039 3.961 29 N -0.541 5.541 30 C 0.017 3.983 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.417 0.583 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.041 0.959 50 H 0.066 0.934 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.751 3.022 20.460 30.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 H 0.100 0.900 4 C -0.137 4.137 5 H 0.146 0.854 6 C 0.318 3.682 7 O -0.454 6.454 8 N -0.358 5.358 9 C 0.028 3.972 10 H 0.100 0.900 11 C -0.165 4.165 12 C -0.073 4.073 13 N -0.244 5.244 14 C -0.080 4.080 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.086 4.086 27 C -0.151 4.151 28 C -0.088 4.088 29 N -0.266 5.266 30 C -0.132 4.132 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.255 0.745 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.511 2.916 20.992 30.198 hybrid contribution -0.301 -0.241 -0.990 1.063 sum 21.211 2.676 20.002 29.277 Atomic orbital electron populations 1.21904 0.94840 1.01623 1.01927 1.22259 0.95727 0.96461 0.88247 0.90018 1.22346 0.95135 0.99590 0.96582 0.85377 1.20698 0.84044 0.83736 0.79725 1.90699 1.60940 1.24503 1.69303 1.45891 1.34678 1.25024 1.30252 1.21991 0.85873 0.98683 0.90661 0.90022 1.23053 0.94632 1.02395 0.96441 1.22854 0.96266 0.98489 0.89719 1.63221 1.02754 1.56057 1.02323 1.22025 0.95077 0.96660 0.94280 1.20785 0.88975 0.85004 0.82372 1.90485 1.64698 1.35609 1.59316 1.41936 1.19462 1.37005 1.22974 1.19687 0.97253 1.21060 1.08048 0.90374 1.26029 1.03025 0.96296 0.96014 1.69680 1.40461 1.27778 1.18311 0.84875 0.77250 0.78147 0.78083 1.19852 1.19536 1.19722 1.23139 0.89521 1.01891 0.94050 1.22499 0.99470 0.97175 0.95956 1.23247 0.91247 0.98819 0.95471 1.64662 1.27727 1.27284 1.06955 1.22543 1.01093 0.95120 0.94398 0.93916 0.92086 0.91791 0.74520 0.89645 0.91117 0.91864 0.94774 0.86719 0.91504 0.77055 0.91363 0.90479 0.87892 0.91835 0.88516 0.89722 0.91588 0.94065 0.91481 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.37 71.98 0.60 -1.97 16 2 C 0.08 1.11 3.09 45.06 0.14 1.24 16 3 H 0.08 0.78 7.69 -2.39 -0.02 0.76 16 4 C -0.11 -1.46 3.37 -10.66 -0.04 -1.49 16 5 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 6 C 0.53 10.19 4.73 87.66 0.41 10.60 16 7 O -0.58 -16.62 14.56 -3.01 -0.04 -16.66 16 8 N -0.71 -11.06 4.79 -436.52 -2.09 -13.15 16 9 C 0.13 2.85 3.32 46.26 0.15 3.00 16 10 H 0.08 2.04 7.55 -2.39 -0.02 2.03 16 11 C -0.13 -3.13 6.77 32.07 0.22 -2.91 16 12 C 0.05 1.78 5.75 86.77 0.50 2.28 16 13 N -0.52 -16.28 4.86 -890.10 -4.33 -20.61 16 14 C 0.05 1.75 5.05 85.56 0.43 2.18 16 15 C 0.44 21.17 7.58 87.66 0.66 21.83 16 16 O -0.62 -34.27 14.61 -3.09 -0.05 -34.31 16 17 N -0.58 -29.82 5.29 -306.97 -1.62 -31.44 16 18 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 21 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 22 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.04 0.89 6.61 86.65 0.57 1.46 16 27 C -0.11 -1.53 6.56 31.80 0.21 -1.32 16 28 C 0.04 0.46 6.56 86.65 0.57 1.02 16 29 N -0.54 -8.02 5.18 -884.07 -4.58 -12.60 16 30 C 0.02 0.17 9.41 127.69 1.20 1.38 16 31 H 0.04 1.05 6.99 -2.39 -0.02 1.03 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.07 7.13 -2.38 -0.02 1.06 16 34 H 0.42 3.88 8.37 -92.71 -0.78 3.11 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 2.47 7.38 -2.39 -0.02 2.45 16 38 H 0.03 1.16 7.62 -2.39 -0.02 1.14 16 39 H 0.11 3.36 8.03 -2.39 -0.02 3.35 16 40 H 0.07 2.10 7.85 -2.39 -0.02 2.08 16 41 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 42 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.08 1.45 7.55 -2.39 -0.02 1.43 16 44 H 0.10 1.75 7.72 -2.38 -0.02 1.73 16 45 H 0.06 1.30 6.93 -2.38 -0.02 1.28 16 46 H 0.10 0.87 8.14 -2.38 -0.02 0.86 16 47 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.07 0.51 8.00 -2.39 -0.02 0.49 16 49 H 0.04 0.32 7.99 -2.39 -0.02 0.30 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -75.22 400.84 -4.06 -79.28 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.57 Total: 35.01 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.92 Total: 18.85 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -12.35 Total: -127.57 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.97 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.22 -4.06 -79.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266321570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.534 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds