Wall clock time and date at job start Tue Mar 31 2020 22:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47326 * 2 1 4 4 N 1.46505 * 109.47382 * 119.99894 * 2 1 3 5 5 C 1.36938 * 120.00177 * 275.00498 * 4 2 1 6 6 H 1.08000 * 119.99639 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00289 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46959 * 89.99819 * 9 7 5 11 11 H 1.48498 * 109.47070 * 210.00010 * 9 7 5 12 12 H 1.48497 * 109.46772 * 330.00258 * 9 7 5 13 13 C 1.52996 * 109.47388 * 239.99758 * 2 1 3 14 14 C 1.53046 * 109.45744 * 64.99983 * 13 2 1 15 15 C 1.53192 * 109.31218 * 178.61460 * 14 13 2 16 16 N 1.46930 * 108.77502 * 54.63417 * 15 14 13 17 17 C 1.34783 * 120.62899 * 126.36668 * 16 15 14 18 18 O 1.21278 * 119.99684 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99954 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.87549 * 40.43888 * 19 17 16 21 21 C 1.54330 * 110.01091 * 279.33904 * 19 17 16 22 22 C 1.55151 * 102.94089 * 262.70660 * 21 19 17 23 23 C 1.55135 * 101.48527 * 324.33036 * 22 21 19 24 24 N 1.47019 * 109.88238 * 161.45514 * 19 17 16 25 25 C 1.34774 * 125.64851 * 300.59210 * 24 19 17 26 26 N 1.34777 * 120.00311 * 180.02562 * 25 24 19 27 27 O 1.21586 * 120.00048 * 359.97438 * 25 24 19 28 28 C 1.46920 * 118.74121 * 306.64433 * 16 15 14 29 29 C 1.52766 * 109.00947 * 53.30611 * 28 16 15 30 30 H 1.08997 * 109.46957 * 60.00292 * 1 2 3 31 31 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47119 * 299.99591 * 1 2 3 33 33 H 0.97000 * 119.99829 * 94.99700 * 4 2 1 34 34 H 0.96998 * 120.00147 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46385 * 184.96971 * 13 2 1 36 36 H 1.08992 * 109.49542 * 58.66646 * 14 13 2 37 37 H 1.09001 * 109.52369 * 298.58368 * 14 13 2 38 38 H 1.08997 * 109.58736 * 294.85141 * 15 14 13 39 39 H 1.09001 * 109.70386 * 174.49228 * 15 14 13 40 40 H 1.09000 * 110.71524 * 21.06908 * 21 19 17 41 41 H 1.08995 * 110.72149 * 144.15998 * 21 19 17 42 42 H 1.08998 * 111.00740 * 82.57321 * 22 21 19 43 43 H 1.09005 * 111.00314 * 206.42394 * 22 21 19 44 44 H 1.08997 * 110.49676 * 278.45601 * 23 22 21 45 45 H 1.09001 * 110.34306 * 156.06460 * 23 22 21 46 46 H 0.97001 * 120.00485 * 180.02562 * 26 25 24 47 47 H 0.97005 * 119.99790 * 359.72197 * 26 25 24 48 48 H 1.08998 * 109.59012 * 173.13887 * 28 16 15 49 49 H 1.09004 * 109.58570 * 293.56991 * 28 16 15 50 50 H 1.08998 * 109.56238 * 185.55267 * 29 28 16 51 51 H 1.09004 * 109.38418 * 65.51281 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6114 -0.6619 3.5093 8 7 2.9236 -1.9392 3.4505 9 14 2.7904 0.2701 5.1183 10 1 1.5226 0.1799 5.8863 11 1 3.8946 -0.3237 5.9141 12 1 3.0962 1.6950 4.8334 13 6 2.0400 -0.7213 -1.2492 14 6 1.6350 0.0693 -2.4954 15 6 2.1770 -0.6373 -3.7420 16 7 1.7131 -2.0314 -3.7345 17 6 1.0632 -2.5445 -4.7980 18 8 0.8559 -1.8538 -5.7731 19 6 0.5931 -3.9761 -4.7749 20 1 0.1915 -4.2184 -3.7911 21 6 1.7651 -4.9223 -5.1110 22 6 1.5670 -5.1967 -6.6251 23 6 0.0197 -5.2240 -6.7342 24 7 -0.4401 -4.1797 -5.8008 25 6 -1.6156 -3.5243 -5.8726 26 7 -2.4830 -3.8030 -6.8658 27 8 -1.8941 -2.6824 -5.0408 28 6 1.9656 -2.8536 -2.5434 29 6 1.4310 -2.1238 -1.3125 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.2462 -2.3966 4.2426 35 1 3.1264 -0.7989 -1.2056 36 1 2.0498 1.0756 -2.4385 37 1 0.5481 0.1265 -2.5533 38 1 3.2666 -0.6148 -3.7300 39 1 1.8108 -0.1351 -4.6374 40 1 2.7212 -4.4312 -4.9299 41 1 1.6925 -5.8455 -4.5362 42 1 1.9903 -4.3923 -7.2267 43 1 1.9938 -6.1593 -6.9069 44 1 -0.3669 -6.1979 -6.4342 45 1 -0.2927 -4.9878 -7.7515 46 1 -3.3289 -3.3310 -6.9177 47 1 -2.2595 -4.4723 -7.5314 48 1 1.4580 -3.8126 -2.6470 49 1 3.0378 -3.0155 -2.4318 50 1 1.7005 -2.6784 -0.4137 51 1 0.3458 -2.0465 -1.3807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267222039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:00 Heat of formation + Delta-G solvation = -75.894429 kcal Electronic energy + Delta-G solvation = -31219.599325 eV Core-core repulsion = 27152.950267 eV Total energy + Delta-G solvation = -4066.649058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99062 -40.64583 -39.28035 -38.08904 -36.83031 -34.85903 -34.61753 -32.75607 -32.12169 -31.96211 -30.47761 -29.64684 -26.77070 -25.77471 -24.93816 -24.31507 -23.29549 -22.29493 -21.57145 -20.48360 -19.82508 -19.24285 -19.11211 -18.39047 -17.77899 -17.13947 -16.75465 -16.35599 -16.20413 -15.97209 -15.80241 -15.48040 -15.40087 -15.17718 -14.92916 -14.42027 -14.28939 -14.14597 -14.05491 -13.98300 -13.67558 -13.62962 -13.08491 -12.98468 -12.91174 -12.79199 -12.65439 -12.32084 -12.20114 -12.13220 -12.00206 -11.97902 -11.77020 -11.60889 -11.46583 -11.27374 -11.12977 -10.90256 -10.83235 -10.72529 -9.64413 -9.61821 -8.96023 -7.90968 -5.17453 1.45365 1.47950 1.48951 1.57045 1.73467 2.00093 2.24792 2.58185 3.30085 3.41949 3.45157 3.59171 3.61133 3.75929 3.77934 3.93325 4.02085 4.11531 4.24025 4.25075 4.34930 4.38131 4.50548 4.53964 4.63435 4.66999 4.70003 4.77302 4.84131 4.85281 4.85625 4.93657 4.98541 5.04037 5.06946 5.09705 5.17734 5.24485 5.31068 5.32925 5.41821 5.54666 5.59600 5.67990 5.88136 5.96389 6.32557 6.40990 6.91505 7.16000 7.39048 7.61112 8.16026 8.41113 9.32452 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.002562 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.559681 B =10928.185312 C =11157.899538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 H 0.039 0.961 4 N -0.732 5.732 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.966 3.034 10 H -0.291 1.291 11 H -0.294 1.294 12 H -0.273 1.273 13 C -0.077 4.077 14 C -0.118 4.118 15 C 0.117 3.883 16 N -0.606 5.606 17 C 0.507 3.493 18 O -0.576 6.576 19 C 0.130 3.870 20 H 0.095 0.905 21 C -0.115 4.115 22 C -0.124 4.124 23 C 0.094 3.906 24 N -0.621 5.621 25 C 0.715 3.285 26 N -0.844 5.844 27 O -0.642 6.642 28 C 0.111 3.889 29 C -0.125 4.125 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.061 0.939 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.419 0.581 47 H 0.412 0.588 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.070 0.930 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -12.172 -25.985 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.066 3.934 3 H 0.057 0.943 4 N -0.374 5.374 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.796 3.204 10 H -0.219 1.219 11 H -0.221 1.221 12 H -0.198 1.198 13 C -0.097 4.097 14 C -0.157 4.157 15 C -0.005 4.005 16 N -0.338 5.338 17 C 0.295 3.705 18 O -0.455 6.455 19 C 0.021 3.979 20 H 0.113 0.887 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.027 4.027 24 N -0.359 5.359 25 C 0.415 3.585 26 N -0.414 5.414 27 O -0.524 6.524 28 C -0.011 4.011 29 C -0.163 4.163 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.140 0.860 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.119 0.881 45 H 0.106 0.894 46 H 0.252 0.748 47 H 0.244 0.756 48 H 0.120 0.880 49 H 0.110 0.890 50 H 0.088 0.912 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.289 -11.114 -25.798 28.282 hybrid contribution -0.426 0.556 1.112 1.315 sum -3.715 -10.558 -24.686 27.104 Atomic orbital electron populations 1.22378 0.98827 1.00628 0.99719 1.20382 0.92035 0.94899 0.86120 0.94298 1.42609 1.78258 1.10504 1.05984 1.19578 1.34613 0.94010 0.88601 0.91312 1.25437 1.03235 0.96919 1.01022 1.69785 1.52809 1.09916 1.29236 0.85238 0.76781 0.78058 0.80294 1.21863 1.22069 1.19792 1.21222 1.00032 0.94981 0.93424 1.21883 1.00844 0.99550 0.93386 1.21547 0.99464 0.81287 0.98246 1.48187 1.56749 1.12950 1.15963 1.21363 0.76408 0.90603 0.82098 1.90615 1.57361 1.62442 1.35128 1.21605 0.90730 0.91837 0.93700 0.88735 1.22752 0.94954 0.99201 0.98452 1.22833 0.94202 1.04331 0.94833 1.22732 0.95660 0.90921 0.93421 1.47354 1.15610 1.41493 1.31464 1.15750 0.80276 0.80189 0.82291 1.42698 1.21709 1.47026 1.29971 1.90960 1.78277 1.38360 1.44785 1.21874 1.02388 0.94045 0.82793 1.21824 1.00254 0.96250 0.97962 0.92452 0.93718 0.95058 0.79054 0.94093 0.91043 0.89710 0.92854 0.89725 0.90900 0.89296 0.86022 0.92048 0.85774 0.88129 0.89389 0.74762 0.75614 0.88005 0.89011 0.91184 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.05 8.76 71.98 0.63 -5.42 16 2 C 0.17 6.97 2.67 44.99 0.12 7.09 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 N -0.73 -36.55 5.06 -322.94 -1.63 -38.18 16 5 C -0.24 -13.17 9.93 84.03 0.83 -12.33 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 9 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 C -0.08 -2.49 2.08 -10.77 -0.02 -2.51 16 14 C -0.12 -3.38 5.08 30.67 0.16 -3.23 16 15 C 0.12 3.14 6.44 86.36 0.56 3.69 16 16 N -0.61 -15.99 2.98 -819.73 -2.44 -18.44 16 17 C 0.51 14.63 6.06 87.65 0.53 15.16 16 18 O -0.58 -21.09 15.37 -3.02 -0.05 -21.14 16 19 C 0.13 2.71 2.36 44.60 0.11 2.82 16 20 H 0.10 2.04 6.57 -2.39 -0.02 2.02 16 21 C -0.12 -1.26 6.10 31.78 0.19 -1.07 16 22 C -0.12 -1.01 7.10 32.06 0.23 -0.79 16 23 C 0.09 0.87 6.59 86.94 0.57 1.44 16 24 N -0.62 -12.68 2.79 -809.61 -2.26 -14.93 16 25 C 0.72 18.99 8.10 179.05 1.45 20.44 16 26 N -0.84 -13.20 8.83 -184.75 -1.63 -14.83 16 27 O -0.64 -24.72 16.79 -3.99 -0.07 -24.79 16 28 C 0.11 2.53 6.16 86.22 0.53 3.06 16 29 C -0.12 -3.76 4.70 30.53 0.14 -3.61 16 30 H 0.06 1.98 6.60 -2.39 -0.02 1.96 16 31 H 0.04 1.75 6.38 -2.38 -0.02 1.74 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.38 19.63 6.35 -92.71 -0.59 19.04 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.71 6.64 -2.39 -0.02 1.69 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.19 7.00 -2.39 -0.02 2.17 16 40 H 0.09 1.02 7.83 -2.39 -0.02 1.00 16 41 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.09 0.56 7.28 -2.39 -0.02 0.55 16 46 H 0.42 5.88 8.93 -92.71 -0.83 5.05 16 47 H 0.41 3.19 7.30 -92.70 -0.68 2.52 16 48 H 0.10 1.87 5.36 -2.39 -0.01 1.86 16 49 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 50 H 0.07 2.35 6.74 -2.39 -0.02 2.33 16 51 H 0.05 1.81 6.43 -2.38 -0.02 1.80 16 Total: -1.00 -84.55 390.28 -0.39 -84.94 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.12 Total: 35.91 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.50 Total: 20.98 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -7.68 Total: -144.46 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.11 Total: -45.93 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -84.55 -0.39 -84.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267222039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.048 kcal (2) G-P(sol) polarization free energy of solvation -84.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds