Wall clock time and date at job start Tue Mar 31 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.01199 * 2 1 4 4 C 1.54322 * 109.89057 * 238.88582 * 2 1 3 5 5 C 1.55138 * 103.02427 * 218.31443 * 4 2 1 6 6 C 1.54904 * 101.65091 * 35.64888 * 5 4 2 7 7 H 1.09003 * 110.37524 * 81.87646 * 6 5 4 8 8 C 1.53003 * 110.37507 * 204.10332 * 6 5 4 9 9 N 1.47450 * 109.88804 * 121.11876 * 2 1 3 10 10 C 1.46895 * 110.99733 * 356.14705 * 9 2 1 11 11 C 1.50697 * 109.47191 * 72.86213 * 10 9 2 12 12 O 1.21281 * 120.00368 * 353.12912 * 11 10 9 13 13 N 1.34782 * 120.00040 * 173.12624 * 11 10 9 14 14 C 1.46505 * 120.00074 * 179.97438 * 13 11 10 15 15 C 1.53933 * 113.73572 * 251.73346 * 14 13 11 16 16 N 1.47957 * 86.17929 * 221.92265 * 15 14 13 17 17 C 1.46895 * 111.00406 * 137.58327 * 16 15 14 18 18 C 1.50699 * 109.47196 * 90.63861 * 17 16 15 19 19 O 1.21291 * 119.99805 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00259 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00523 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99863 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00478 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00199 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99891 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46830 * 90.00434 * 25 23 21 27 27 H 1.48501 * 109.47230 * 210.00356 * 25 23 21 28 28 H 1.48493 * 109.47212 * 330.00710 * 25 23 21 29 29 C 1.47963 * 90.76345 * 24.68648 * 16 15 14 30 30 H 1.09006 * 109.47514 * 173.64457 * 1 2 3 31 31 H 1.09000 * 109.47280 * 293.64507 * 1 2 3 32 32 H 1.09003 * 109.47604 * 53.64449 * 1 2 3 33 33 H 1.09001 * 110.70344 * 336.69487 * 4 2 1 34 34 H 1.08998 * 110.70681 * 99.92430 * 4 2 1 35 35 H 1.08993 * 110.99524 * 153.74740 * 5 4 2 36 36 H 1.09001 * 110.98776 * 277.56539 * 5 4 2 37 37 H 1.09002 * 109.46944 * 63.54578 * 8 6 5 38 38 H 1.09000 * 109.46989 * 183.54845 * 8 6 5 39 39 H 1.08999 * 109.46908 * 303.54732 * 8 6 5 40 40 H 1.09007 * 109.46850 * 192.85845 * 10 9 2 41 41 H 1.08993 * 109.47647 * 312.86085 * 10 9 2 42 42 H 0.96996 * 120.00315 * 0.02562 * 13 11 10 43 43 H 1.09003 * 112.93556 * 23.43987 * 14 13 11 44 44 H 1.08995 * 113.75621 * 336.23808 * 15 14 13 45 45 H 1.08996 * 113.75855 * 107.60547 * 15 14 13 46 46 H 1.08999 * 109.47455 * 210.63917 * 17 16 15 47 47 H 1.09006 * 109.46800 * 330.64158 * 17 16 15 48 48 H 0.97005 * 120.00025 * 0.02562 * 20 18 17 49 49 H 0.97000 * 120.00159 * 179.97438 * 24 23 21 50 50 H 1.08995 * 113.76220 * 220.98979 * 29 16 15 51 51 H 1.09008 * 113.75476 * 89.63106 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0550 -0.7499 -1.2424 5 6 3.2891 -1.5135 -0.6942 6 6 2.8188 -1.8834 0.7346 7 1 2.1954 -2.7772 0.7095 8 6 4.0236 -2.1011 1.6523 9 7 2.0315 -0.7166 1.1870 10 6 0.9239 -1.1341 2.0569 11 6 0.1856 -2.2803 1.4150 12 8 0.4656 -2.6262 0.2868 13 7 -0.7860 -2.9212 2.0947 14 6 -1.5041 -4.0351 1.4704 15 6 -2.9560 -3.6983 1.0854 16 7 -3.3010 -5.0389 1.6079 17 6 -4.5350 -4.9924 2.4035 18 6 -5.7196 -5.2513 1.5087 19 8 -5.5523 -5.4550 0.3248 20 7 -6.9650 -5.2565 2.0240 21 6 -8.0427 -5.4915 1.2100 22 1 -7.8939 -5.6720 0.1556 23 6 -9.3267 -5.4963 1.7411 24 7 -10.3597 -5.7220 0.9608 25 14 -9.5843 -5.1832 3.5646 26 1 -9.7616 -3.7272 3.7966 27 1 -10.7952 -5.9090 4.0252 28 1 -8.4008 -5.6645 4.3214 29 6 -2.1064 -5.0278 2.4809 30 1 -0.3634 -1.0214 -0.1138 31 1 -0.3634 0.4122 0.9414 32 1 -0.3634 0.6092 -0.8276 33 1 1.3055 -1.4471 -1.6169 34 1 2.3513 -0.0464 -2.0205 35 1 3.4881 -2.4084 -1.2837 36 1 4.1657 -0.8665 -0.6614 37 1 4.5801 -1.1688 1.7486 38 1 3.6783 -2.4215 2.6353 39 1 4.6705 -2.8681 1.2267 40 1 1.3195 -1.4515 3.0218 41 1 0.2405 -0.2975 2.2019 42 1 -1.0103 -2.6444 2.9968 43 1 -0.9362 -4.5124 0.6718 44 1 -3.3843 -2.8787 1.6622 45 1 -3.1122 -3.5918 0.0120 46 1 -4.4943 -5.7542 3.1820 47 1 -4.6344 -4.0087 2.8625 48 1 -7.0988 -5.0932 2.9708 49 1 -11.2560 -5.7258 1.3317 50 1 -1.5840 -5.9835 2.5225 51 1 -2.2864 -4.5970 3.4659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267669956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:33 Heat of formation + Delta-G solvation = 9.133608 kcal Electronic energy + Delta-G solvation = -30153.606145 eV Core-core repulsion = 26090.644179 eV Total energy + Delta-G solvation = -4062.961966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48756 -40.15233 -38.28369 -37.67560 -34.33777 -33.89480 -33.17899 -32.35426 -31.68968 -30.03038 -28.37849 -27.04740 -26.22744 -25.36237 -23.99180 -23.33646 -21.19994 -21.11829 -20.39997 -19.46370 -19.39876 -18.39979 -17.59225 -16.82090 -16.44480 -16.34297 -16.13165 -15.37177 -15.20344 -14.92603 -14.73119 -14.53103 -14.13264 -13.63500 -13.52951 -13.40390 -13.22441 -13.12602 -12.89575 -12.84376 -12.60174 -12.46540 -12.20242 -11.92252 -11.88128 -11.76040 -11.63515 -11.44546 -11.21345 -11.10400 -10.95820 -10.81799 -10.80424 -10.62166 -10.55516 -10.25344 -9.98712 -9.57829 -9.31437 -8.92262 -8.46324 -8.33471 -8.18819 -6.31777 -3.83278 2.23086 2.81280 2.99830 3.03828 3.12696 3.58809 3.71664 3.81684 4.08440 4.28898 4.42032 4.43156 4.51051 4.66023 4.72502 4.78201 4.92329 4.99560 5.04683 5.06773 5.16079 5.17133 5.22186 5.29167 5.31324 5.44770 5.45773 5.46829 5.50415 5.53352 5.57777 5.66402 5.74056 5.76579 5.87818 5.89264 5.92484 5.96696 6.00335 6.14972 6.15880 6.31437 6.38568 6.69242 6.73547 6.93933 7.16621 7.56944 7.88108 8.13422 8.59477 8.94783 9.41416 9.83053 10.81474 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002022 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.858735 B =13846.919081 C =14040.644883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 H 0.080 0.920 4 C -0.130 4.130 5 C -0.116 4.116 6 C 0.045 3.955 7 H 0.094 0.906 8 C -0.136 4.136 9 N -0.499 5.499 10 C 0.019 3.981 11 C 0.487 3.513 12 O -0.523 6.523 13 N -0.719 5.719 14 C 0.117 3.883 15 C 0.000 4.000 16 N -0.444 5.444 17 C 0.010 3.990 18 C 0.454 3.546 19 O -0.555 6.555 20 N -0.594 5.594 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.270 1.270 29 C -0.009 4.009 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.400 0.600 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.369 0.631 49 H 0.273 0.727 50 H 0.097 0.903 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.772 11.352 7.932 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.032 4.032 3 H 0.098 0.902 4 C -0.168 4.168 5 C -0.155 4.155 6 C -0.062 4.062 7 H 0.112 0.888 8 C -0.194 4.194 9 N -0.222 5.222 10 C -0.113 4.113 11 C 0.273 3.727 12 O -0.402 6.402 13 N -0.371 5.371 14 C 0.011 3.989 15 C -0.130 4.130 16 N -0.167 5.167 17 C -0.122 4.122 18 C 0.239 3.761 19 O -0.436 6.436 20 N -0.234 5.234 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.138 4.138 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.234 0.766 43 H 0.143 0.857 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.202 0.798 49 H 0.084 0.916 50 H 0.115 0.885 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 27.051 10.732 6.122 29.739 hybrid contribution -1.291 0.508 2.205 2.606 sum 25.760 11.241 8.327 29.313 Atomic orbital electron populations 1.22954 0.95918 1.05016 1.01660 1.22278 0.94005 0.97781 0.89131 0.90181 1.22790 0.97958 0.99136 0.96953 1.22581 0.97556 0.99981 0.95339 1.23093 0.94823 0.94521 0.93799 0.88813 1.21747 0.97344 1.01431 0.98908 1.64027 1.18300 1.22485 1.17347 1.22628 0.94305 0.96093 0.98272 1.21917 0.79618 0.84490 0.86646 1.90652 1.64607 1.66542 1.18362 1.46294 1.37379 1.34576 1.18840 1.23058 0.92091 0.86824 0.96930 1.24476 0.93644 0.91368 1.03523 1.68354 0.99503 1.26046 1.22774 1.22507 0.92008 1.01400 0.96332 1.19556 0.83180 0.84340 0.89002 1.90577 1.84754 1.52150 1.16095 1.42216 1.06158 1.65314 1.09688 1.19424 0.83119 1.45683 0.95033 0.86309 1.25041 0.95216 0.97750 0.98256 1.69621 0.98769 1.48498 1.35302 0.86666 0.78610 0.79056 0.84996 1.19703 1.20155 1.19564 1.24426 0.93250 1.00354 0.95800 0.89317 0.92532 0.92375 0.90103 0.91820 0.91225 0.91529 0.92290 0.93274 0.92563 0.88171 0.86893 0.76561 0.85712 0.91155 0.88452 0.89163 0.92336 0.79831 0.91626 0.88482 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 7.71 37.15 0.29 -1.53 16 2 C 0.08 0.68 3.72 -66.72 -0.25 0.44 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.23 5.94 -24.91 -0.15 -1.38 16 5 C -0.12 -1.04 6.50 -24.60 -0.16 -1.20 16 6 C 0.04 0.41 2.41 -66.19 -0.16 0.25 16 7 H 0.09 1.04 4.70 -52.06 -0.24 0.80 16 8 C -0.14 -1.04 9.59 37.16 0.36 -0.68 16 9 N -0.50 -4.32 5.07 -216.95 -1.10 -5.42 16 10 C 0.02 0.13 5.59 -4.98 -0.03 0.11 16 11 C 0.49 4.36 5.27 -10.98 -0.06 4.30 16 12 O -0.52 -6.32 9.27 5.56 0.05 -6.26 16 13 N -0.72 -5.54 5.36 -54.95 -0.29 -5.84 16 14 C 0.12 1.23 4.43 -69.64 -0.31 0.92 16 15 C 0.00 0.00 7.75 -2.77 -0.02 -0.02 16 16 N -0.44 -6.73 5.65 -239.93 -1.36 -8.09 16 17 C 0.01 0.16 5.28 -4.98 -0.03 0.13 16 18 C 0.45 10.35 7.83 -10.99 -0.09 10.26 16 19 O -0.56 -15.24 16.01 5.55 0.09 -15.15 16 20 N -0.59 -14.12 5.09 -10.97 -0.06 -14.17 16 21 C -0.30 -8.63 10.16 -14.94 -0.15 -8.78 16 22 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 25 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 29 C -0.01 -0.09 7.70 -2.77 -0.02 -0.11 16 30 H 0.09 1.00 4.13 -51.93 -0.21 0.78 16 31 H 0.06 0.44 5.94 -51.93 -0.31 0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.93 6.80 -51.93 -0.35 0.58 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.11 0.67 5.73 -51.93 -0.30 0.37 16 42 H 0.40 1.98 8.73 -40.82 -0.36 1.63 16 43 H 0.13 1.55 7.46 -51.93 -0.39 1.16 16 44 H 0.07 0.85 7.48 -51.93 -0.39 0.47 16 45 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 46 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 47 H 0.06 0.78 7.38 -51.93 -0.38 0.40 16 48 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 49 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.07 0.56 7.90 -51.92 -0.41 0.15 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -34.44 389.50 -9.80 -44.24 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.20 Total: 11.67 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.87 Total: 3.69 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -2.03 Total: -58.57 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.14 Total: -21.41 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.44 -9.80 -44.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267669956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.377 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds