Wall clock time and date at job start Tue Mar 31 2020 21:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.01199 * 2 1 4 4 C 1.54322 * 109.89057 * 238.88582 * 2 1 3 5 5 C 1.55138 * 103.02427 * 218.31443 * 4 2 1 6 6 C 1.54904 * 101.65091 * 35.64888 * 5 4 2 7 7 H 1.09003 * 110.37524 * 81.87646 * 6 5 4 8 8 C 1.53003 * 110.37507 * 204.10332 * 6 5 4 9 9 N 1.47450 * 109.88804 * 121.11876 * 2 1 3 10 10 C 1.46895 * 110.99733 * 356.14705 * 9 2 1 11 11 C 1.50697 * 109.47191 * 72.86213 * 10 9 2 12 12 O 1.21281 * 120.00368 * 353.12912 * 11 10 9 13 13 N 1.34782 * 120.00040 * 173.12624 * 11 10 9 14 14 C 1.46505 * 120.00074 * 179.97438 * 13 11 10 15 15 C 1.53933 * 113.73572 * 251.73346 * 14 13 11 16 16 N 1.47957 * 86.17929 * 221.92265 * 15 14 13 17 17 C 1.46895 * 111.00406 * 137.58327 * 16 15 14 18 18 C 1.50699 * 109.47196 * 90.63861 * 17 16 15 19 19 O 1.21291 * 119.99805 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00259 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00523 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99863 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00478 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00199 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99891 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46830 * 90.00434 * 25 23 21 27 27 H 1.48501 * 109.47230 * 210.00356 * 25 23 21 28 28 H 1.48493 * 109.47212 * 330.00710 * 25 23 21 29 29 C 1.47963 * 90.76345 * 24.68648 * 16 15 14 30 30 H 1.09006 * 109.47514 * 173.64457 * 1 2 3 31 31 H 1.09000 * 109.47280 * 293.64507 * 1 2 3 32 32 H 1.09003 * 109.47604 * 53.64449 * 1 2 3 33 33 H 1.09001 * 110.70344 * 336.69487 * 4 2 1 34 34 H 1.08998 * 110.70681 * 99.92430 * 4 2 1 35 35 H 1.08993 * 110.99524 * 153.74740 * 5 4 2 36 36 H 1.09001 * 110.98776 * 277.56539 * 5 4 2 37 37 H 1.09002 * 109.46944 * 63.54578 * 8 6 5 38 38 H 1.09000 * 109.46989 * 183.54845 * 8 6 5 39 39 H 1.08999 * 109.46908 * 303.54732 * 8 6 5 40 40 H 1.09007 * 109.46850 * 192.85845 * 10 9 2 41 41 H 1.08993 * 109.47647 * 312.86085 * 10 9 2 42 42 H 0.96996 * 120.00315 * 0.02562 * 13 11 10 43 43 H 1.09003 * 112.93556 * 23.43987 * 14 13 11 44 44 H 1.08995 * 113.75621 * 336.23808 * 15 14 13 45 45 H 1.08996 * 113.75855 * 107.60547 * 15 14 13 46 46 H 1.08999 * 109.47455 * 210.63917 * 17 16 15 47 47 H 1.09006 * 109.46800 * 330.64158 * 17 16 15 48 48 H 0.97005 * 120.00025 * 0.02562 * 20 18 17 49 49 H 0.97000 * 120.00159 * 179.97438 * 24 23 21 50 50 H 1.08995 * 113.76220 * 220.98979 * 29 16 15 51 51 H 1.09008 * 113.75476 * 89.63106 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0550 -0.7499 -1.2424 5 6 3.2891 -1.5135 -0.6942 6 6 2.8188 -1.8834 0.7346 7 1 2.1954 -2.7772 0.7095 8 6 4.0236 -2.1011 1.6523 9 7 2.0315 -0.7166 1.1870 10 6 0.9239 -1.1341 2.0569 11 6 0.1856 -2.2803 1.4150 12 8 0.4656 -2.6262 0.2868 13 7 -0.7860 -2.9212 2.0947 14 6 -1.5041 -4.0351 1.4704 15 6 -2.9560 -3.6983 1.0854 16 7 -3.3010 -5.0389 1.6079 17 6 -4.5350 -4.9924 2.4035 18 6 -5.7196 -5.2513 1.5087 19 8 -5.5523 -5.4550 0.3248 20 7 -6.9650 -5.2565 2.0240 21 6 -8.0427 -5.4915 1.2100 22 1 -7.8939 -5.6720 0.1556 23 6 -9.3267 -5.4963 1.7411 24 7 -10.3597 -5.7220 0.9608 25 14 -9.5843 -5.1832 3.5646 26 1 -9.7616 -3.7272 3.7966 27 1 -10.7952 -5.9090 4.0252 28 1 -8.4008 -5.6645 4.3214 29 6 -2.1064 -5.0278 2.4809 30 1 -0.3634 -1.0214 -0.1138 31 1 -0.3634 0.4122 0.9414 32 1 -0.3634 0.6092 -0.8276 33 1 1.3055 -1.4471 -1.6169 34 1 2.3513 -0.0464 -2.0205 35 1 3.4881 -2.4084 -1.2837 36 1 4.1657 -0.8665 -0.6614 37 1 4.5801 -1.1688 1.7486 38 1 3.6783 -2.4215 2.6353 39 1 4.6705 -2.8681 1.2267 40 1 1.3195 -1.4515 3.0218 41 1 0.2405 -0.2975 2.2019 42 1 -1.0103 -2.6444 2.9968 43 1 -0.9362 -4.5124 0.6718 44 1 -3.3843 -2.8787 1.6622 45 1 -3.1122 -3.5918 0.0120 46 1 -4.4943 -5.7542 3.1820 47 1 -4.6344 -4.0087 2.8625 48 1 -7.0988 -5.0932 2.9708 49 1 -11.2560 -5.7258 1.3317 50 1 -1.5840 -5.9835 2.5225 51 1 -2.2864 -4.5970 3.4659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267669956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:32 Heat of formation + Delta-G solvation = -21.315555 kcal Electronic energy + Delta-G solvation = -30154.926520 eV Core-core repulsion = 26090.644179 eV Total energy + Delta-G solvation = -4064.282341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.21777 -41.19552 -39.81711 -38.66026 -36.01413 -35.06892 -33.86699 -33.75978 -33.04520 -31.22144 -29.04283 -27.98245 -27.17444 -26.87964 -24.86154 -24.52977 -21.97133 -21.84748 -21.31612 -21.22374 -20.26707 -20.18088 -18.28935 -17.87420 -17.67777 -17.20478 -17.05985 -16.68939 -16.54848 -16.17849 -15.66471 -15.41174 -15.32172 -14.92197 -14.79683 -14.54464 -14.21792 -14.07155 -14.03025 -13.79205 -13.74031 -13.60650 -13.35116 -13.05137 -12.74079 -12.59807 -12.54467 -12.42914 -12.39309 -12.31326 -11.99042 -11.86393 -11.82302 -11.67116 -11.51360 -11.48293 -11.25201 -11.01165 -10.48341 -10.25858 -10.07822 -9.71302 -9.13688 -8.41998 -6.03537 1.29018 1.35404 1.44677 1.56038 1.96025 2.09097 2.22845 2.68213 2.94499 3.13331 3.15970 3.50525 3.73686 3.75256 3.78945 3.86894 4.06097 4.09754 4.19221 4.28921 4.31663 4.34718 4.37375 4.45013 4.48517 4.50057 4.62497 4.63621 4.69278 4.76164 4.78938 4.86790 4.90145 4.97084 5.03322 5.04394 5.18962 5.23621 5.26982 5.35557 5.40701 5.50345 5.52285 5.58661 5.88253 5.99381 6.01843 6.07633 6.56975 6.59214 6.87983 7.26459 7.39235 7.98327 8.75997 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.002022 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.858735 B =13846.919081 C =14040.644883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.088 0.912 4 C -0.131 4.131 5 C -0.117 4.117 6 C 0.045 3.955 7 H 0.074 0.926 8 C -0.130 4.130 9 N -0.498 5.498 10 C 0.021 3.979 11 C 0.484 3.516 12 O -0.558 6.558 13 N -0.703 5.703 14 C 0.133 3.867 15 C -0.004 4.004 16 N -0.489 5.489 17 C 0.024 3.976 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.592 5.592 21 C -0.330 4.330 22 H 0.050 0.950 23 C -0.019 4.019 24 N -0.937 5.937 25 Si 0.969 3.031 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.228 1.228 29 C 0.011 3.989 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.419 0.581 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.124 0.876 47 H 0.098 0.902 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.104 0.896 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.548 12.888 13.236 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.032 4.032 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.155 4.155 6 C -0.062 4.062 7 H 0.092 0.908 8 C -0.188 4.188 9 N -0.221 5.221 10 C -0.110 4.110 11 C 0.272 3.728 12 O -0.438 6.438 13 N -0.357 5.357 14 C 0.026 3.974 15 C -0.135 4.135 16 N -0.212 5.212 17 C -0.108 4.108 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.235 5.235 21 C -0.459 4.459 22 H 0.068 0.932 23 C -0.217 4.217 24 N -0.577 5.577 25 Si 0.789 3.211 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.151 1.151 29 C -0.118 4.118 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.257 0.743 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.141 0.859 47 H 0.115 0.885 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.122 0.878 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 28.861 12.280 11.472 33.397 hybrid contribution -1.813 0.005 0.351 1.847 sum 27.048 12.286 11.822 31.973 Atomic orbital electron populations 1.22889 0.96153 1.03627 1.02438 1.22296 0.93790 0.98084 0.89074 0.89359 1.22749 0.97592 0.98903 0.97684 1.22594 0.97599 0.99808 0.95478 1.23034 0.95170 0.93898 0.94139 0.90836 1.21694 0.96626 1.01641 0.98851 1.64081 1.18830 1.22130 1.17044 1.22780 0.93986 0.95671 0.98565 1.22351 0.79555 0.84705 0.86198 1.90669 1.65609 1.67483 1.20088 1.46062 1.36601 1.33541 1.19451 1.22564 0.90364 0.87627 0.96822 1.24468 0.96034 0.91601 1.01350 1.68252 1.00794 1.27127 1.25068 1.22454 0.88831 1.04480 0.95002 1.21037 0.84568 0.81494 0.89254 1.90555 1.85856 1.54004 1.19389 1.42032 1.05454 1.65804 1.10166 1.18977 0.85703 1.48052 0.93160 0.93200 1.26199 0.93812 0.96292 1.05433 1.69818 0.99677 1.49466 1.38763 0.85309 0.79923 0.79728 0.76175 1.17991 1.20104 1.15111 1.24465 0.90065 1.00714 0.96551 0.91467 0.90757 0.92807 0.92839 0.91047 0.91938 0.90510 0.92074 0.92515 0.92294 0.85600 0.85255 0.74334 0.88398 0.89252 0.92731 0.85854 0.88458 0.77386 0.91150 0.87778 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 7.71 71.98 0.56 -2.85 16 2 C 0.08 1.28 3.72 45.26 0.17 1.45 16 3 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.13 -2.53 5.94 31.78 0.19 -2.34 16 5 C -0.12 -2.07 6.50 31.98 0.21 -1.86 16 6 C 0.05 0.78 2.41 45.38 0.11 0.89 16 7 H 0.07 1.62 4.70 -4.45 -0.02 1.59 16 8 C -0.13 -1.74 9.59 71.98 0.69 -1.05 16 9 N -0.50 -7.66 5.07 -840.31 -4.26 -11.91 16 10 C 0.02 0.24 5.59 85.56 0.48 0.72 16 11 C 0.48 7.93 5.27 87.66 0.46 8.40 16 12 O -0.56 -13.72 9.27 -3.03 -0.03 -13.75 16 13 N -0.70 -8.98 5.36 -446.15 -2.39 -11.37 16 14 C 0.13 2.62 4.43 46.55 0.21 2.83 16 15 C 0.00 -0.12 7.75 86.41 0.67 0.55 16 16 N -0.49 -14.05 5.65 -912.99 -5.16 -19.21 16 17 C 0.02 0.69 5.28 85.56 0.45 1.14 16 18 C 0.45 20.46 7.83 87.66 0.69 21.15 16 19 O -0.61 -35.55 16.01 -3.06 -0.05 -35.60 16 20 N -0.59 -27.89 5.09 -306.99 -1.56 -29.45 16 21 C -0.33 -19.56 10.16 84.04 0.85 -18.70 16 22 H 0.05 3.56 7.39 -2.91 -0.02 3.54 16 23 C -0.02 -1.07 5.50 84.93 0.47 -0.60 16 24 N -0.94 -56.99 13.96 21.66 0.30 -56.69 16 25 Si 0.97 38.24 27.74 68.60 1.90 40.14 16 26 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 27 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 28 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 29 C 0.01 0.18 7.70 86.40 0.67 0.84 16 30 H 0.07 1.53 4.13 -2.38 -0.01 1.52 16 31 H 0.07 1.00 5.94 -2.39 -0.01 0.98 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.33 6.80 -2.39 -0.02 1.31 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.19 8.06 -2.39 -0.02 1.17 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.13 1.04 5.73 -2.39 -0.01 1.03 16 42 H 0.42 2.25 8.73 -92.71 -0.81 1.44 16 43 H 0.10 2.51 7.46 -2.39 -0.02 2.50 16 44 H 0.09 1.96 7.48 -2.39 -0.02 1.94 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.12 2.77 8.08 -2.39 -0.02 2.75 16 47 H 0.10 2.08 7.38 -2.38 -0.02 2.06 16 48 H 0.39 14.82 5.76 -92.70 -0.53 14.28 16 49 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 50 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.11 1.02 7.90 -2.38 -0.02 1.00 16 Total: -1.00 -85.25 389.50 -4.84 -90.09 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.45 Total: 37.19 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.86 Total: 10.56 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -13.07 Total: -128.63 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.08 Total: -49.34 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -85.25 -4.84 -90.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267669956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.771 kcal (2) G-P(sol) polarization free energy of solvation -85.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds