Wall clock time and date at job start Tue Mar 31 2020 22:43:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47555 * 2 1
4 4 C 1.53001 * 109.47011 * 120.00215 * 2 1 3
5 5 C 1.50696 * 109.46999 * 294.99766 * 4 2 1
6 6 N 1.34779 * 120.00089 * 179.97438 * 5 4 2
7 7 O 1.21280 * 119.99948 * 0.02562 * 5 4 2
8 8 C 1.50701 * 109.46905 * 239.99952 * 2 1 3
9 9 O 1.21281 * 120.00243 * 249.13196 * 8 2 1
10 10 N 1.34774 * 119.99947 * 69.14238 * 8 2 1
11 11 C 1.47019 * 125.64947 * 3.99868 * 10 8 2
12 12 C 1.54339 * 107.26363 * 178.85247 * 11 10 8
13 13 C 1.55153 * 103.02242 * 338.14038 * 12 11 10
14 14 H 1.09006 * 111.00343 * 277.23498 * 13 12 11
15 15 N 1.46904 * 111.00344 * 153.38235 * 13 12 11
16 16 C 1.46901 * 110.99801 * 192.10385 * 15 13 12
17 17 C 1.53238 * 109.33523 * 172.74431 * 16 15 13
18 18 N 1.47080 * 108.52224 * 53.83679 * 17 16 15
19 19 C 1.36932 * 120.88489 * 128.83740 * 18 17 16
20 20 H 1.08002 * 119.99761 * 209.91643 * 19 18 17
21 21 C 1.38813 * 120.00244 * 29.90651 * 19 18 17
22 22 N 1.31620 * 119.99761 * 11.60692 * 21 19 18
23 23 Si 1.86795 * 120.00065 * 191.60603 * 21 19 18
24 24 H 1.48505 * 109.47277 * 90.00176 * 23 21 19
25 25 H 1.48506 * 109.47159 * 210.00219 * 23 21 19
26 26 H 1.48503 * 109.47413 * 329.99932 * 23 21 19
27 27 C 1.47079 * 118.23418 * 308.81004 * 18 17 16
28 28 C 1.46898 * 111.00003 * 67.80444 * 15 13 12
29 29 C 1.47430 * 125.64702 * 184.30973 * 10 8 2
30 30 H 1.09002 * 109.47240 * 307.57627 * 1 2 3
31 31 H 1.09001 * 109.46869 * 67.56985 * 1 2 3
32 32 H 1.08995 * 109.47107 * 187.56800 * 1 2 3
33 33 H 1.09000 * 109.47112 * 54.99871 * 4 2 1
34 34 H 1.08995 * 109.47162 * 174.99963 * 4 2 1
35 35 H 0.96995 * 120.00057 * 0.02562 * 6 5 4
36 36 H 0.96997 * 119.99776 * 179.97438 * 6 5 4
37 37 H 1.08992 * 109.88213 * 298.39810 * 11 10 8
38 38 H 1.08997 * 109.88343 * 59.56404 * 11 10 8
39 39 H 1.09004 * 110.84532 * 219.67061 * 12 11 10
40 40 H 1.09002 * 110.51532 * 96.45533 * 12 11 10
41 41 H 1.08996 * 109.49595 * 292.70618 * 16 15 13
42 42 H 1.09001 * 109.49018 * 52.79077 * 16 15 13
43 43 H 1.09002 * 109.63066 * 294.12175 * 17 16 15
44 44 H 1.09006 * 109.78557 * 173.63887 * 17 16 15
45 45 H 0.97000 * 119.99710 * 179.97438 * 22 21 19
46 46 H 1.09005 * 109.62634 * 291.47645 * 27 18 17
47 47 H 1.08992 * 109.79062 * 170.99371 * 27 18 17
48 48 H 1.08999 * 109.49302 * 307.21616 * 28 15 13
49 49 H 1.09001 * 109.49583 * 67.28838 * 28 15 13
50 50 H 1.09000 * 110.36430 * 322.92730 * 29 10 8
51 51 H 1.09004 * 110.36368 * 85.24951 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6413 0.0570 2.4765
6 7 1.9844 -0.3920 3.7002
7 8 1.0110 1.0869 2.3632
8 6 2.0323 -0.7104 -1.2305
9 8 2.5871 -1.7839 -1.1270
10 7 1.8651 -0.1528 -2.4460
11 6 1.2881 1.1738 -2.7081
12 6 1.3250 1.3958 -4.2350
13 6 2.4313 0.4145 -4.7043
14 1 3.4214 0.8532 -4.5794
15 7 2.2126 0.0015 -6.0970
16 6 3.0766 -1.1324 -6.4517
17 6 2.6926 -1.6471 -7.8430
18 7 2.7297 -0.5185 -8.7854
19 6 3.4267 -0.6067 -9.9607
20 1 3.8590 0.2802 -10.4000
21 6 3.5780 -1.8361 -10.5874
22 7 2.8699 -2.8706 -10.1865
23 14 4.7862 -2.0221 -11.9998
24 1 6.1163 -2.4104 -11.4655
25 1 4.3012 -3.0721 -12.9312
26 1 4.9018 -0.7317 -12.7256
27 6 1.9976 0.7073 -8.4321
28 6 2.4088 1.1293 -7.0176
29 6 2.2245 -0.7748 -3.7335
30 1 -0.3634 0.6267 0.8145
31 1 -0.3633 0.3921 -0.9499
32 1 -0.3633 -1.0187 0.1353
33 1 1.6053 -1.7198 1.2951
34 1 3.1262 -0.7995 1.2056
35 1 2.4882 -1.2159 3.7908
36 1 1.7281 0.1092 4.4901
37 1 0.2588 1.2074 -2.3514
38 1 1.8806 1.9408 -2.2095
39 1 1.5967 2.4248 -4.4709
40 1 0.3651 1.1371 -4.6819
41 1 4.1174 -0.8086 -6.4581
42 1 2.9480 -1.9304 -5.7204
43 1 1.6870 -2.0668 -7.8136
44 1 3.3998 -2.4132 -8.1612
45 1 2.9753 -3.7296 -10.6246
46 1 0.9252 0.5139 -8.4593
47 1 2.2445 1.5008 -9.1373
48 1 1.7960 1.9716 -6.6966
49 1 3.4589 1.4217 -7.0160
50 1 3.1463 -1.3478 -3.6336
51 1 1.4150 -1.4148 -4.0846
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001273376994.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:43:02
Heat of formation + Delta-G solvation = -41.440385 kcal
Electronic energy + Delta-G solvation = -30162.119532 eV
Core-core repulsion = 26096.964513 eV
Total energy + Delta-G solvation = -4065.155019 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-40.69183 -39.72911 -38.50786 -36.80443 -34.56386 -34.09018 -34.04273 -31.59062
-30.73066 -29.72775 -28.85295 -27.95190 -26.10712 -24.60878 -23.20439 -22.85217
-21.98306 -20.80287 -20.31167 -19.15583 -19.08128 -17.99402 -17.45140 -17.07738
-16.57723 -16.28493 -15.82309 -15.16275 -15.07909 -14.82595 -14.44156 -14.22224
-14.10441 -13.76745 -13.51971 -13.47063 -13.37244 -13.20406 -12.96249 -12.69233
-12.48444 -12.39470 -12.18580 -11.75575 -11.50911 -11.44272 -11.41549 -11.16821
-10.98789 -10.82513 -10.75423 -10.43056 -10.31753 -10.28484 -10.11915 -10.02305
-9.82183 -9.74688 -9.58907 -8.73897 -8.50884 -7.89524 -6.61498 -5.77172
-3.23415 2.24119 2.49021 2.69844 3.21913 3.37712 3.44245 3.45541
4.13735 4.23798 4.33955 4.49792 4.57793 4.62226 4.65315 4.76540
4.95794 5.07557 5.19369 5.29024 5.31151 5.33102 5.41496 5.42714
5.47477 5.63577 5.72371 5.73710 5.82627 5.86710 5.91920 5.93953
5.99908 6.07777 6.14742 6.18113 6.28520 6.34086 6.35384 6.53101
6.70035 6.87521 6.92794 7.24204 7.38376 7.56710 7.64838 7.71738
7.81524 7.84516 8.01161 8.46625 9.22801 9.84460 10.44305 11.31289
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.029896 B = 0.002043 C = 0.001963
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.355048 B =13702.669883 C =14262.213779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.089 4.089
3 H 0.102 0.898
4 C -0.125 4.125
5 C 0.519 3.481
6 N -0.857 5.857
7 O -0.541 6.541
8 C 0.533 3.467
9 O -0.544 6.544
10 N -0.614 5.614
11 C 0.098 3.902
12 C -0.123 4.123
13 C 0.069 3.931
14 H 0.050 0.950
15 N -0.520 5.520
16 C 0.032 3.968
17 C 0.179 3.821
18 N -0.595 5.595
19 C -0.252 4.252
20 H 0.064 0.936
21 C 0.003 3.997
22 N -0.904 5.904
23 Si 0.905 3.095
24 H -0.288 1.288
25 H -0.290 1.290
26 H -0.279 1.279
27 C 0.149 3.851
28 C 0.045 3.955
29 C 0.114 3.886
30 H 0.086 0.914
31 H 0.064 0.936
32 H 0.056 0.944
33 H 0.104 0.896
34 H 0.101 0.899
35 H 0.403 0.597
36 H 0.401 0.599
37 H 0.075 0.925
38 H 0.068 0.932
39 H 0.079 0.921
40 H 0.090 0.910
41 H 0.025 0.975
42 H 0.063 0.937
43 H 0.027 0.973
44 H 0.089 0.911
45 H 0.254 0.746
46 H 0.025 0.975
47 H 0.055 0.945
48 H 0.063 0.937
49 H 0.027 0.973
50 H 0.077 0.923
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.216 7.076 25.233 26.402
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.111 4.111
3 H 0.120 0.880
4 C -0.166 4.166
5 C 0.305 3.695
6 N -0.421 5.421
7 O -0.418 6.418
8 C 0.321 3.679
9 O -0.421 6.421
10 N -0.348 5.348
11 C -0.025 4.025
12 C -0.161 4.161
13 C -0.041 4.041
14 H 0.068 0.932
15 N -0.246 5.246
16 C -0.097 4.097
17 C 0.053 3.947
18 N -0.319 5.319
19 C -0.382 4.382
20 H 0.082 0.918
21 C -0.196 4.196
22 N -0.549 5.549
23 Si 0.735 3.265
24 H -0.215 1.215
25 H -0.217 1.217
26 H -0.205 1.205
27 C 0.022 3.978
28 C -0.084 4.084
29 C -0.008 4.008
30 H 0.104 0.896
31 H 0.083 0.917
32 H 0.075 0.925
33 H 0.122 0.878
34 H 0.119 0.881
35 H 0.231 0.769
36 H 0.231 0.769
37 H 0.093 0.907
38 H 0.086 0.914
39 H 0.098 0.902
40 H 0.108 0.892
41 H 0.044 0.956
42 H 0.081 0.919
43 H 0.045 0.955
44 H 0.107 0.893
45 H 0.064 0.936
46 H 0.043 0.957
47 H 0.074 0.926
48 H 0.081 0.919
49 H 0.046 0.954
50 H 0.095 0.905
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.792 6.777 24.932 26.114
hybrid contribution 1.675 -0.098 -0.259 1.698
sum -2.117 6.679 24.673 25.649
Atomic orbital electron populations
1.21955 0.92092 1.02963 1.03848 1.20943 0.98507 1.00699 0.90933
0.88007 1.21485 1.03813 1.00311 0.90957 1.20675 0.78290 0.85283
0.85278 1.43889 1.60268 1.29633 1.08286 1.90719 1.39713 1.24655
1.86754 1.20248 0.78746 0.85494 0.83393 1.90706 1.43200 1.22177
1.86060 1.48403 1.61969 1.18614 1.05841 1.22207 0.98816 0.84266
0.97187 1.22700 1.00809 0.99749 0.92847 1.22739 0.96940 0.94440
0.89992 0.93222 1.62039 1.55026 1.08061 0.99428 1.22973 0.93693
0.92101 1.00948 1.20864 1.00041 0.90341 0.83426 1.44073 1.56944
1.11525 1.19310 1.19177 1.25997 0.94212 0.98829 0.91808 1.25142
0.99104 0.97237 0.98102 1.69977 1.40646 1.01087 1.43185 0.86256
0.80835 0.77449 0.81983 1.21488 1.21677 1.20470 1.20970 0.95024
0.90346 0.91413 1.22628 0.98597 0.92022 0.95144 1.22271 1.01620
0.95578 0.81335 0.89562 0.91727 0.92474 0.87765 0.88051 0.76875
0.76861 0.90693 0.91395 0.90200 0.89177 0.95633 0.91908 0.95510
0.89299 0.93573 0.95662 0.92639 0.91887 0.95445 0.90494 0.90044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.33 8.76 37.16 0.33 -1.01 16
2 C -0.09 -0.83 1.76 -91.77 -0.16 -1.00 16
3 H 0.10 0.93 7.78 -51.93 -0.40 0.52 16
4 C -0.13 -0.97 4.47 -27.88 -0.12 -1.10 16
5 C 0.52 4.07 7.85 -10.99 -0.09 3.98 16
6 N -0.86 -3.62 8.87 31.22 0.28 -3.35 16
7 O -0.54 -6.12 14.82 5.56 0.08 -6.04 16
8 C 0.53 6.60 7.10 -10.99 -0.08 6.52 16
9 O -0.54 -8.50 16.26 5.56 0.09 -8.41 16
10 N -0.61 -7.36 3.32 -170.51 -0.57 -7.93 16
11 C 0.10 0.92 6.12 -3.06 -0.02 0.90 16
12 C -0.12 -1.29 5.62 -24.89 -0.14 -1.43 16
13 C 0.07 0.93 2.72 -65.57 -0.18 0.75 16
14 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
15 N -0.52 -8.78 4.53 -223.78 -1.01 -9.79 16
16 C 0.03 0.61 5.43 -3.70 -0.02 0.59 16
17 C 0.18 4.31 5.37 -3.60 -0.02 4.29 16
18 N -0.60 -14.96 3.03 -172.01 -0.52 -15.48 16
19 C -0.25 -6.92 9.63 -15.06 -0.15 -7.07 16
20 H 0.06 1.72 7.86 -52.49 -0.41 1.31 16
21 C 0.00 0.08 5.04 -17.43 -0.09 -0.01 16
22 N -0.90 -26.27 11.06 55.49 0.61 -25.66 16
23 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16
24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
27 C 0.15 3.11 6.69 -3.60 -0.02 3.08 16
28 C 0.05 0.78 5.52 -3.70 -0.02 0.76 16
29 C 0.11 1.58 5.05 -2.53 -0.01 1.56 16
30 H 0.09 0.81 6.13 -51.93 -0.32 0.50 16
31 H 0.06 0.54 5.54 -51.93 -0.29 0.25 16
32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16
33 H 0.10 0.76 8.12 -51.93 -0.42 0.34 16
34 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16
35 H 0.40 0.67 8.83 -40.82 -0.36 0.31 16
36 H 0.40 1.35 8.93 -40.82 -0.36 0.98 16
37 H 0.07 0.60 5.91 -51.93 -0.31 0.30 16
38 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16
39 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16
40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.06 1.12 6.60 -51.93 -0.34 0.78 16
43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.09 2.38 6.19 -51.93 -0.32 2.06 16
45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
47 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16
48 H 0.06 0.90 7.11 -51.93 -0.37 0.53 16
49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
50 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16
51 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16
LS Contribution 392.17 15.07 5.91 5.91
Total: -1.00 -33.89 392.17 -9.44 -43.33
By element:
Atomic # 1 Polarization: 8.37 SS G_CDS: -8.49 Total: -0.13 kcal
Atomic # 6 Polarization: 11.63 SS G_CDS: -0.79 Total: 10.84 kcal
Atomic # 7 Polarization: -60.99 SS G_CDS: -1.21 Total: -62.20 kcal
Atomic # 8 Polarization: -14.62 SS G_CDS: 0.17 Total: -14.45 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -33.89 -9.44 -43.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273376994.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.888 kcal
(2) G-P(sol) polarization free energy of solvation -33.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.001 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.440 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds