Wall clock time and date at job start Tue Mar 31 2020 22:43:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47555 * 2 1
4 4 C 1.53001 * 109.47011 * 120.00215 * 2 1 3
5 5 C 1.50696 * 109.46999 * 294.99766 * 4 2 1
6 6 N 1.34779 * 120.00089 * 179.97438 * 5 4 2
7 7 O 1.21280 * 119.99948 * 0.02562 * 5 4 2
8 8 C 1.50701 * 109.46905 * 239.99952 * 2 1 3
9 9 O 1.21281 * 120.00243 * 249.13196 * 8 2 1
10 10 N 1.34774 * 119.99947 * 69.14238 * 8 2 1
11 11 C 1.47019 * 125.64947 * 3.99868 * 10 8 2
12 12 C 1.54339 * 107.26363 * 178.85247 * 11 10 8
13 13 C 1.55153 * 103.02242 * 338.14038 * 12 11 10
14 14 H 1.09006 * 111.00343 * 277.23498 * 13 12 11
15 15 N 1.46904 * 111.00344 * 153.38235 * 13 12 11
16 16 C 1.46901 * 110.99801 * 192.10385 * 15 13 12
17 17 C 1.53238 * 109.33523 * 172.74431 * 16 15 13
18 18 N 1.47080 * 108.52224 * 53.83679 * 17 16 15
19 19 C 1.36932 * 120.88489 * 128.83740 * 18 17 16
20 20 H 1.08002 * 119.99761 * 209.91643 * 19 18 17
21 21 C 1.38813 * 120.00244 * 29.90651 * 19 18 17
22 22 N 1.31620 * 119.99761 * 11.60692 * 21 19 18
23 23 Si 1.86795 * 120.00065 * 191.60603 * 21 19 18
24 24 H 1.48505 * 109.47277 * 90.00176 * 23 21 19
25 25 H 1.48506 * 109.47159 * 210.00219 * 23 21 19
26 26 H 1.48503 * 109.47413 * 329.99932 * 23 21 19
27 27 C 1.47079 * 118.23418 * 308.81004 * 18 17 16
28 28 C 1.46898 * 111.00003 * 67.80444 * 15 13 12
29 29 C 1.47430 * 125.64702 * 184.30973 * 10 8 2
30 30 H 1.09002 * 109.47240 * 307.57627 * 1 2 3
31 31 H 1.09001 * 109.46869 * 67.56985 * 1 2 3
32 32 H 1.08995 * 109.47107 * 187.56800 * 1 2 3
33 33 H 1.09000 * 109.47112 * 54.99871 * 4 2 1
34 34 H 1.08995 * 109.47162 * 174.99963 * 4 2 1
35 35 H 0.96995 * 120.00057 * 0.02562 * 6 5 4
36 36 H 0.96997 * 119.99776 * 179.97438 * 6 5 4
37 37 H 1.08992 * 109.88213 * 298.39810 * 11 10 8
38 38 H 1.08997 * 109.88343 * 59.56404 * 11 10 8
39 39 H 1.09004 * 110.84532 * 219.67061 * 12 11 10
40 40 H 1.09002 * 110.51532 * 96.45533 * 12 11 10
41 41 H 1.08996 * 109.49595 * 292.70618 * 16 15 13
42 42 H 1.09001 * 109.49018 * 52.79077 * 16 15 13
43 43 H 1.09002 * 109.63066 * 294.12175 * 17 16 15
44 44 H 1.09006 * 109.78557 * 173.63887 * 17 16 15
45 45 H 0.97000 * 119.99710 * 179.97438 * 22 21 19
46 46 H 1.09005 * 109.62634 * 291.47645 * 27 18 17
47 47 H 1.08992 * 109.79062 * 170.99371 * 27 18 17
48 48 H 1.08999 * 109.49302 * 307.21616 * 28 15 13
49 49 H 1.09001 * 109.49583 * 67.28838 * 28 15 13
50 50 H 1.09000 * 110.36430 * 322.92730 * 29 10 8
51 51 H 1.09004 * 110.36368 * 85.24951 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6413 0.0570 2.4765
6 7 1.9844 -0.3920 3.7002
7 8 1.0110 1.0869 2.3632
8 6 2.0323 -0.7104 -1.2305
9 8 2.5871 -1.7839 -1.1270
10 7 1.8651 -0.1528 -2.4460
11 6 1.2881 1.1738 -2.7081
12 6 1.3250 1.3958 -4.2350
13 6 2.4313 0.4145 -4.7043
14 1 3.4214 0.8532 -4.5794
15 7 2.2126 0.0015 -6.0970
16 6 3.0766 -1.1324 -6.4517
17 6 2.6926 -1.6471 -7.8430
18 7 2.7297 -0.5185 -8.7854
19 6 3.4267 -0.6067 -9.9607
20 1 3.8590 0.2802 -10.4000
21 6 3.5780 -1.8361 -10.5874
22 7 2.8699 -2.8706 -10.1865
23 14 4.7862 -2.0221 -11.9998
24 1 6.1163 -2.4104 -11.4655
25 1 4.3012 -3.0721 -12.9312
26 1 4.9018 -0.7317 -12.7256
27 6 1.9976 0.7073 -8.4321
28 6 2.4088 1.1293 -7.0176
29 6 2.2245 -0.7748 -3.7335
30 1 -0.3634 0.6267 0.8145
31 1 -0.3633 0.3921 -0.9499
32 1 -0.3633 -1.0187 0.1353
33 1 1.6053 -1.7198 1.2951
34 1 3.1262 -0.7995 1.2056
35 1 2.4882 -1.2159 3.7908
36 1 1.7281 0.1092 4.4901
37 1 0.2588 1.2074 -2.3514
38 1 1.8806 1.9408 -2.2095
39 1 1.5967 2.4248 -4.4709
40 1 0.3651 1.1371 -4.6819
41 1 4.1174 -0.8086 -6.4581
42 1 2.9480 -1.9304 -5.7204
43 1 1.6870 -2.0668 -7.8136
44 1 3.3998 -2.4132 -8.1612
45 1 2.9753 -3.7296 -10.6246
46 1 0.9252 0.5139 -8.4593
47 1 2.2445 1.5008 -9.1373
48 1 1.7960 1.9716 -6.6966
49 1 3.4589 1.4217 -7.0160
50 1 3.1463 -1.3478 -3.6336
51 1 1.4150 -1.4148 -4.0846
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001273376994.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:43:01
Heat of formation + Delta-G solvation = -67.668291 kcal
Electronic energy + Delta-G solvation = -30163.256859 eV
Core-core repulsion = 26096.964513 eV
Total energy + Delta-G solvation = -4066.292346 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.58377 -40.52693 -39.74870 -38.12518 -35.86381 -35.18555 -34.61175 -33.31965
-32.06753 -31.26372 -29.90760 -28.78389 -27.71710 -25.72264 -24.53107 -24.46428
-23.12353 -21.66713 -21.31030 -20.80358 -19.95603 -18.81691 -18.71260 -18.00200
-17.62417 -17.30639 -16.81074 -16.52543 -16.13382 -16.03494 -15.73308 -15.50334
-15.29067 -15.20281 -14.89479 -14.81528 -14.54220 -14.31716 -14.04407 -13.79731
-13.55924 -13.44088 -13.16327 -13.06953 -12.94792 -12.69755 -12.56060 -12.52044
-12.22642 -12.19538 -12.14048 -12.00622 -11.85460 -11.68857 -11.43159 -11.35718
-11.02796 -10.80429 -10.59809 -10.55535 -9.70657 -9.31501 -8.63488 -7.86971
-5.36668 1.46264 1.47068 1.53668 1.56273 1.65389 1.80477 2.49943
2.66005 2.97289 3.29416 3.32417 3.53231 3.67560 3.71061 3.85831
3.95036 4.07910 4.15931 4.20391 4.30361 4.34870 4.39278 4.40693
4.55758 4.55889 4.62703 4.66874 4.69919 4.71244 4.78234 4.85963
4.90093 4.96947 5.00019 5.04906 5.10760 5.17154 5.23347 5.28508
5.34638 5.38945 5.61446 5.69723 5.94979 6.13180 6.25040 6.39542
6.45424 6.48575 7.05157 7.14283 7.37127 7.84002 8.39128 9.19340
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.029896 B = 0.002043 C = 0.001963
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.355048 B =13702.669883 C =14262.213779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.082 4.082
3 H 0.110 0.890
4 C -0.123 4.123
5 C 0.521 3.479
6 N -0.839 5.839
7 O -0.579 6.579
8 C 0.530 3.470
9 O -0.582 6.582
10 N -0.615 5.615
11 C 0.098 3.902
12 C -0.114 4.114
13 C 0.071 3.929
14 H 0.052 0.948
15 N -0.526 5.526
16 C 0.050 3.950
17 C 0.188 3.812
18 N -0.615 5.615
19 C -0.262 4.262
20 H 0.068 0.932
21 C -0.052 4.052
22 N -0.937 5.937
23 Si 0.970 3.030
24 H -0.286 1.286
25 H -0.295 1.295
26 H -0.267 1.267
27 C 0.144 3.856
28 C 0.058 3.942
29 C 0.117 3.883
30 H 0.083 0.917
31 H 0.070 0.930
32 H 0.054 0.946
33 H 0.108 0.892
34 H 0.106 0.894
35 H 0.417 0.583
36 H 0.408 0.592
37 H 0.093 0.907
38 H 0.090 0.910
39 H 0.104 0.896
40 H 0.087 0.913
41 H 0.017 0.983
42 H 0.073 0.927
43 H -0.001 1.001
44 H 0.054 0.946
45 H 0.250 0.750
46 H 0.018 0.982
47 H 0.062 0.938
48 H 0.103 0.897
49 H 0.022 0.978
50 H 0.058 0.942
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.217 9.302 26.921 28.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.103 4.103
3 H 0.128 0.872
4 C -0.163 4.163
5 C 0.307 3.693
6 N -0.403 5.403
7 O -0.459 6.459
8 C 0.320 3.680
9 O -0.463 6.463
10 N -0.348 5.348
11 C -0.024 4.024
12 C -0.152 4.152
13 C -0.038 4.038
14 H 0.070 0.930
15 N -0.251 5.251
16 C -0.079 4.079
17 C 0.062 3.938
18 N -0.339 5.339
19 C -0.393 4.393
20 H 0.085 0.915
21 C -0.248 4.248
22 N -0.583 5.583
23 Si 0.799 3.201
24 H -0.213 1.213
25 H -0.221 1.221
26 H -0.192 1.192
27 C 0.018 3.982
28 C -0.071 4.071
29 C -0.006 4.006
30 H 0.102 0.898
31 H 0.089 0.911
32 H 0.073 0.927
33 H 0.126 0.874
34 H 0.124 0.876
35 H 0.248 0.752
36 H 0.240 0.760
37 H 0.111 0.889
38 H 0.108 0.892
39 H 0.122 0.878
40 H 0.105 0.895
41 H 0.035 0.965
42 H 0.092 0.908
43 H 0.017 0.983
44 H 0.072 0.928
45 H 0.059 0.941
46 H 0.036 0.964
47 H 0.080 0.920
48 H 0.121 0.879
49 H 0.041 0.959
50 H 0.076 0.924
51 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -3.792 9.037 26.667 28.410
hybrid contribution 1.642 -0.795 -0.739 1.969
sum -2.150 8.242 25.927 27.290
Atomic orbital electron populations
1.21897 0.91519 1.02782 1.04005 1.20928 0.98792 1.00724 0.89882
0.87220 1.21459 1.04094 1.00287 0.90491 1.20619 0.77930 0.84724
0.86058 1.43737 1.59168 1.29911 1.07476 1.90706 1.41638 1.26214
1.87316 1.20822 0.77990 0.85092 0.84124 1.90687 1.44978 1.23978
1.86639 1.48489 1.61721 1.19512 1.05057 1.22409 1.00197 0.83175
0.96611 1.22707 0.99171 0.99973 0.93307 1.22745 0.98446 0.95144
0.87467 0.93014 1.61957 1.54216 1.07515 1.01391 1.22580 0.93462
0.93634 0.98223 1.20573 0.97411 0.89846 0.85964 1.44356 1.57567
1.12873 1.19085 1.19524 1.25928 0.94375 0.99428 0.91477 1.25925
1.00977 0.97056 1.00813 1.70152 1.42335 1.01308 1.44529 0.85221
0.78444 0.77523 0.78960 1.21305 1.22122 1.19155 1.21150 0.94147
0.88771 0.94131 1.22476 0.98959 0.92835 0.92827 1.22068 1.00239
0.95643 0.82664 0.89846 0.91134 0.92728 0.87421 0.87588 0.75222
0.76016 0.88867 0.89216 0.87768 0.89472 0.96461 0.90835 0.98330
0.92766 0.94112 0.96403 0.92000 0.87876 0.95945 0.92378 0.91467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 8.76 71.98 0.63 -1.65 16
2 C -0.08 -1.39 1.76 -11.54 -0.02 -1.41 16
3 H 0.11 1.72 7.78 -2.39 -0.02 1.70 16
4 C -0.12 -1.73 4.47 29.85 0.13 -1.60 16
5 C 0.52 7.28 7.85 87.66 0.69 7.97 16
6 N -0.84 -5.39 8.87 -173.53 -1.54 -6.93 16
7 O -0.58 -12.20 14.82 -3.03 -0.04 -12.25 16
8 C 0.53 12.51 7.10 87.66 0.62 13.13 16
9 O -0.58 -18.11 16.26 -3.03 -0.05 -18.16 16
10 N -0.61 -13.68 3.32 -811.77 -2.70 -16.38 16
11 C 0.10 1.49 6.12 86.73 0.53 2.02 16
12 C -0.11 -1.97 5.62 31.79 0.18 -1.79 16
13 C 0.07 1.79 2.72 46.30 0.13 1.91 16
14 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16
15 N -0.53 -17.13 4.53 -861.91 -3.90 -21.03 16
16 C 0.05 1.98 5.43 86.38 0.47 2.45 16
17 C 0.19 9.41 5.37 86.35 0.46 9.87 16
18 N -0.61 -31.44 3.03 -698.13 -2.11 -33.55 16
19 C -0.26 -14.58 9.63 84.03 0.81 -13.77 16
20 H 0.07 3.61 7.86 -2.91 -0.02 3.59 16
21 C -0.05 -2.97 5.04 84.86 0.43 -2.54 16
22 N -0.94 -56.41 11.06 21.65 0.24 -56.17 16
23 Si 0.97 45.37 29.57 68.60 2.03 47.40 16
24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16
25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16
26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
27 C 0.14 5.88 6.69 86.35 0.58 6.46 16
28 C 0.06 1.86 5.52 86.38 0.48 2.33 16
29 C 0.12 3.16 5.05 86.85 0.44 3.60 16
30 H 0.08 1.43 6.13 -2.39 -0.01 1.42 16
31 H 0.07 1.00 5.54 -2.39 -0.01 0.99 16
32 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16
33 H 0.11 1.44 8.12 -2.39 -0.02 1.42 16
34 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16
35 H 0.42 0.47 8.83 -92.71 -0.82 -0.35 16
36 H 0.41 1.91 8.93 -92.71 -0.83 1.08 16
37 H 0.09 1.14 5.91 -2.39 -0.01 1.13 16
38 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16
39 H 0.10 1.37 7.97 -2.38 -0.02 1.35 16
40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
42 H 0.07 2.69 6.60 -2.39 -0.02 2.68 16
43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16
44 H 0.05 3.06 6.19 -2.38 -0.01 3.05 16
45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16
46 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16
47 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16
48 H 0.10 2.52 7.11 -2.39 -0.02 2.50 16
49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
50 H 0.06 1.77 7.73 -2.39 -0.02 1.75 16
51 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16
Total: -1.00 -75.89 392.17 -2.23 -78.12
By element:
Atomic # 1 Polarization: 12.66 SS G_CDS: -0.70 Total: 11.97 kcal
Atomic # 6 Polarization: 20.43 SS G_CDS: 6.55 Total: 26.98 kcal
Atomic # 7 Polarization: -124.05 SS G_CDS: -10.02 Total: -134.06 kcal
Atomic # 8 Polarization: -30.31 SS G_CDS: -0.09 Total: -30.40 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -75.89 -2.23 -78.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001273376994.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.452 kcal
(2) G-P(sol) polarization free energy of solvation -75.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds