Wall clock time and date at job start Tue Mar 31 2020 21:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.28979 * 2 1 4 4 C 1.54259 * 110.32630 * 122.13191 * 2 1 3 5 5 C 1.54370 * 105.06169 * 118.89282 * 4 2 1 6 6 N 1.48560 * 104.59581 * 23.85737 * 5 4 2 7 7 C 1.46905 * 111.00030 * 200.96127 * 6 5 4 8 8 C 1.50699 * 109.46847 * 290.12114 * 7 6 5 9 9 O 1.21279 * 120.00085 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99852 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99401 * 179.97438 * 10 8 7 12 12 C 1.50711 * 109.46566 * 180.02562 * 11 10 8 13 13 C 1.30991 * 119.99596 * 127.15498 * 12 11 10 14 14 C 1.50703 * 120.00394 * 7.56303 * 13 12 11 15 15 N 1.46903 * 109.47362 * 127.00672 * 14 13 12 16 16 C 1.46902 * 111.00082 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46888 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00211 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99460 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99463 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00377 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99528 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00585 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99655 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47287 * 90.00017 * 24 22 20 26 26 H 1.48500 * 109.46895 * 210.00041 * 24 22 20 27 27 H 1.48504 * 109.47327 * 329.99638 * 24 22 20 28 28 C 1.48557 * 104.22086 * 320.51199 * 6 5 4 29 29 H 1.08999 * 109.47318 * 299.32512 * 1 2 3 30 30 H 1.08997 * 109.47394 * 179.32542 * 1 2 3 31 31 H 1.09003 * 109.47426 * 59.31917 * 1 2 3 32 32 H 1.08999 * 110.32321 * 237.79043 * 4 2 1 33 33 H 1.09004 * 110.32403 * 359.97438 * 4 2 1 34 34 H 1.09004 * 110.41271 * 142.62824 * 5 4 2 35 35 H 1.09002 * 110.41476 * 265.07360 * 5 4 2 36 36 H 1.09004 * 109.46961 * 50.11873 * 7 6 5 37 37 H 1.09001 * 109.47158 * 170.12093 * 7 6 5 38 38 H 0.96993 * 119.99833 * 0.02562 * 10 8 7 39 39 H 1.08994 * 109.47563 * 299.99804 * 11 10 8 40 40 H 1.08995 * 109.46985 * 60.00466 * 11 10 8 41 41 H 1.07994 * 119.99931 * 307.16075 * 12 11 10 42 42 H 1.08003 * 120.00091 * 187.56002 * 13 12 11 43 43 H 1.09003 * 109.47419 * 247.00416 * 14 13 12 44 44 H 1.08999 * 109.46870 * 7.00509 * 14 13 12 45 45 H 1.00906 * 110.99623 * 303.95300 * 15 14 13 46 46 H 1.08995 * 109.46743 * 300.00041 * 16 15 14 47 47 H 1.09003 * 109.46752 * 59.99490 * 16 15 14 48 48 H 0.96997 * 120.00483 * 0.02562 * 19 17 16 49 49 H 0.96993 * 120.00182 * 180.02562 * 23 22 20 50 50 H 1.09006 * 110.41488 * 280.70821 * 28 6 5 51 51 H 1.08995 * 110.41444 * 158.26252 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7694 1.2250 5 6 2.8806 -1.9416 0.6375 6 7 3.2693 -1.4835 -0.7212 7 6 3.6067 -2.6231 -1.5846 8 6 4.9010 -3.2394 -1.1199 9 8 5.4847 -2.7753 -0.1634 10 7 5.4095 -4.3070 -1.7666 11 6 6.6681 -4.9057 -1.3152 12 6 7.0142 -6.0750 -2.2008 13 6 8.1929 -6.1401 -2.7686 14 6 9.2608 -5.1410 -2.4049 15 7 10.4846 -5.8529 -2.0131 16 6 11.5499 -4.9086 -1.6504 17 6 12.7862 -5.6739 -1.2546 18 8 12.7808 -6.8867 -1.2733 19 7 13.8984 -5.0107 -0.8808 20 6 15.0234 -5.7070 -0.5213 21 1 15.0185 -6.7868 -0.5379 22 6 16.1698 -5.0232 -0.1354 23 7 16.1757 -3.7093 -0.1146 24 14 17.7029 -5.9718 0.3538 25 1 18.5455 -6.2041 -0.8467 26 1 18.4716 -5.1883 1.3541 27 1 17.3103 -7.2771 0.9432 28 6 2.0662 -0.7721 -1.2246 29 1 -0.3634 0.5033 0.8960 30 1 -0.3634 -1.0275 -0.0121 31 1 -0.3634 0.5244 -0.8838 32 1 2.7082 -0.1252 1.8253 33 1 1.2388 -1.1467 1.8265 34 1 3.7671 -2.1297 1.2432 35 1 2.2647 -2.8387 0.5745 36 1 2.8111 -3.3664 -1.5325 37 1 3.7165 -2.2797 -2.6132 38 1 4.9425 -4.6784 -2.5313 39 1 7.4636 -4.1625 -1.3680 40 1 6.5589 -5.2486 -0.2863 41 1 6.2905 -6.8590 -2.3674 42 1 8.3995 -6.9100 -3.4974 43 1 9.4704 -4.5040 -3.2643 44 1 8.9157 -4.5269 -1.5731 45 1 10.3019 -6.4983 -1.2593 46 1 11.7753 -4.2698 -2.5043 47 1 11.2203 -4.2932 -0.8133 48 1 13.9029 -4.0408 -0.8662 49 1 16.9761 -3.2321 0.1544 50 1 1.3228 -1.4863 -1.5791 51 1 2.3393 -0.0797 -2.0208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274371592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:14 Heat of formation + Delta-G solvation = -43.502860 kcal Electronic energy + Delta-G solvation = -27783.136779 eV Core-core repulsion = 23717.892325 eV Total energy + Delta-G solvation = -4065.244455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.34339 -38.96275 -38.31413 -37.01797 -35.01420 -33.89144 -33.83980 -32.81467 -31.18342 -30.19892 -28.70642 -27.61456 -26.17478 -25.00868 -24.52841 -23.13527 -21.86790 -20.85924 -20.37306 -19.43053 -18.80083 -17.85545 -17.20394 -17.05408 -16.52671 -16.11776 -15.83063 -15.65570 -15.17262 -14.93640 -14.69075 -14.50634 -14.26639 -13.94166 -13.78449 -13.62418 -13.50441 -13.40906 -13.26973 -12.92173 -12.72436 -12.61882 -12.25040 -12.16555 -11.81529 -11.75866 -11.61193 -11.44638 -11.34510 -11.13822 -11.05772 -10.92872 -10.90109 -10.37183 -10.19410 -10.13360 -9.56882 -9.48477 -9.15566 -8.88115 -8.43468 -8.03388 -7.93222 -6.38970 -3.79863 1.76600 2.40052 2.89703 3.20162 3.28587 3.34579 3.64333 3.93522 4.13702 4.14956 4.22341 4.39017 4.47209 4.50406 4.65494 4.74267 4.80075 4.84248 4.85072 4.96644 5.02442 5.06492 5.14123 5.18733 5.22971 5.27816 5.33750 5.38038 5.44073 5.60115 5.61351 5.64495 5.72140 5.73770 5.79298 5.84389 5.86061 6.00146 6.11559 6.28422 6.35670 6.40167 6.44342 6.52530 7.19423 7.23199 7.57757 7.65941 7.99834 8.08880 8.63971 9.20396 9.57014 10.08417 10.78769 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.001447 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.806057 B =19350.650096 C =20463.870722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.081 0.919 4 C -0.121 4.121 5 C 0.032 3.968 6 N -0.493 5.493 7 C 0.026 3.974 8 C 0.511 3.489 9 O -0.519 6.519 10 N -0.728 5.728 11 C 0.140 3.860 12 C -0.192 4.192 13 C -0.108 4.108 14 C 0.069 3.931 15 N -0.664 5.664 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.035 3.965 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.351 0.649 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.393 0.607 49 H 0.271 0.729 50 H 0.046 0.954 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.624 6.181 -4.059 34.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.095 4.095 6 N -0.216 5.216 7 C -0.106 4.106 8 C 0.296 3.704 9 O -0.393 6.393 10 N -0.382 5.382 11 C 0.017 3.983 12 C -0.211 4.211 13 C -0.127 4.127 14 C -0.060 4.060 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.093 4.093 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.233 0.767 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.170 0.830 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.226 0.774 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -32.312 6.111 -3.927 33.119 hybrid contribution -0.388 -0.324 0.534 0.736 sum -32.701 5.787 -3.393 33.382 Atomic orbital electron populations 1.21868 0.94585 1.01747 1.01984 1.21874 0.95398 1.00068 0.94305 0.90043 1.22403 0.99224 0.97011 0.97304 1.23223 0.99569 0.96036 0.90711 1.65184 1.33183 1.21289 1.01986 1.22150 0.95279 0.93868 0.99305 1.20467 0.86725 0.79833 0.83361 1.90726 1.60812 1.60843 1.26924 1.45973 1.25453 1.32218 1.34514 1.20517 0.85985 0.94089 0.97686 1.22760 0.98969 0.98778 1.00630 1.22966 0.93761 0.98955 0.97011 1.21274 0.89305 0.94921 1.00473 1.60058 1.05445 1.18184 1.45938 1.21694 0.92067 0.94474 1.00065 1.19787 0.84821 0.88427 0.84337 1.90519 1.84065 1.13785 1.58429 1.41859 1.10389 1.09262 1.58468 1.19712 0.88668 0.93312 1.41276 0.87912 1.25262 0.99457 0.95670 0.97525 1.69610 1.30151 1.06248 1.48254 0.85854 0.80819 0.79270 0.78312 1.20397 1.20945 1.19428 1.23255 0.90786 0.97378 0.97848 0.92293 0.92775 0.92494 0.90796 0.91219 0.88633 0.94328 0.91764 0.87721 0.76692 0.89904 0.91026 0.86425 0.85884 0.90120 0.93953 0.83000 0.89505 0.93715 0.77422 0.91871 0.93620 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.91 37.16 0.33 -0.30 16 2 C -0.10 -0.58 3.65 -89.24 -0.33 -0.90 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.83 6.65 -25.35 -0.17 -1.00 16 5 C 0.03 0.28 5.80 -2.19 -0.01 0.26 16 6 N -0.49 -4.27 5.06 -231.41 -1.17 -5.45 16 7 C 0.03 0.18 5.30 -4.97 -0.03 0.15 16 8 C 0.51 5.11 7.63 -10.98 -0.08 5.02 16 9 O -0.52 -7.53 14.84 5.56 0.08 -7.45 16 10 N -0.73 -5.74 5.55 -61.47 -0.34 -6.08 16 11 C 0.14 1.34 5.76 -5.19 -0.03 1.31 16 12 C -0.19 -1.63 9.63 -36.02 -0.35 -1.97 16 13 C -0.11 -1.10 9.77 -36.02 -0.35 -1.45 16 14 C 0.07 0.85 5.77 -4.97 -0.03 0.82 16 15 N -0.66 -10.92 6.12 -116.33 -0.71 -11.64 16 16 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 17 C 0.44 10.66 7.82 -10.99 -0.09 10.57 16 18 O -0.58 -16.15 15.78 5.55 0.09 -16.06 16 19 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 C 0.04 0.22 6.03 -2.18 -0.01 0.21 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.23 8.12 -51.93 -0.42 -0.19 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.40 7.71 -51.93 -0.40 0.00 16 34 H 0.10 1.05 6.91 -51.93 -0.36 0.70 16 35 H 0.04 0.29 7.82 -51.93 -0.41 -0.11 16 36 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 37 H 0.10 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.40 1.92 8.46 -40.82 -0.35 1.58 16 39 H 0.08 0.94 5.30 -51.93 -0.28 0.66 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.52 5.29 -51.93 -0.27 0.24 16 45 H 0.35 5.99 8.42 -39.29 -0.33 5.66 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 49 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.05 0.23 7.70 -51.93 -0.40 -0.17 16 51 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 415.13 15.07 6.26 6.26 Total: -1.00 -34.46 415.13 -10.10 -44.56 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -8.53 Total: 12.90 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.41 Total: 5.46 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -1.56 Total: -61.96 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.46 -10.10 -44.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274371592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.054 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds