Wall clock time and date at job start Tue Mar 31 2020 21:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.28979 * 2 1 4 4 C 1.54259 * 110.32630 * 122.13191 * 2 1 3 5 5 C 1.54370 * 105.06169 * 118.89282 * 4 2 1 6 6 N 1.48560 * 104.59581 * 23.85737 * 5 4 2 7 7 C 1.46905 * 111.00030 * 200.96127 * 6 5 4 8 8 C 1.50699 * 109.46847 * 290.12114 * 7 6 5 9 9 O 1.21279 * 120.00085 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99852 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99401 * 179.97438 * 10 8 7 12 12 C 1.50711 * 109.46566 * 180.02562 * 11 10 8 13 13 C 1.30991 * 119.99596 * 127.15498 * 12 11 10 14 14 C 1.50703 * 120.00394 * 7.56303 * 13 12 11 15 15 N 1.46903 * 109.47362 * 127.00672 * 14 13 12 16 16 C 1.46902 * 111.00082 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46888 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00211 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99460 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99463 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00377 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99528 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00585 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99655 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47287 * 90.00017 * 24 22 20 26 26 H 1.48500 * 109.46895 * 210.00041 * 24 22 20 27 27 H 1.48504 * 109.47327 * 329.99638 * 24 22 20 28 28 C 1.48557 * 104.22086 * 320.51199 * 6 5 4 29 29 H 1.08999 * 109.47318 * 299.32512 * 1 2 3 30 30 H 1.08997 * 109.47394 * 179.32542 * 1 2 3 31 31 H 1.09003 * 109.47426 * 59.31917 * 1 2 3 32 32 H 1.08999 * 110.32321 * 237.79043 * 4 2 1 33 33 H 1.09004 * 110.32403 * 359.97438 * 4 2 1 34 34 H 1.09004 * 110.41271 * 142.62824 * 5 4 2 35 35 H 1.09002 * 110.41476 * 265.07360 * 5 4 2 36 36 H 1.09004 * 109.46961 * 50.11873 * 7 6 5 37 37 H 1.09001 * 109.47158 * 170.12093 * 7 6 5 38 38 H 0.96993 * 119.99833 * 0.02562 * 10 8 7 39 39 H 1.08994 * 109.47563 * 299.99804 * 11 10 8 40 40 H 1.08995 * 109.46985 * 60.00466 * 11 10 8 41 41 H 1.07994 * 119.99931 * 307.16075 * 12 11 10 42 42 H 1.08003 * 120.00091 * 187.56002 * 13 12 11 43 43 H 1.09003 * 109.47419 * 247.00416 * 14 13 12 44 44 H 1.08999 * 109.46870 * 7.00509 * 14 13 12 45 45 H 1.00906 * 110.99623 * 303.95300 * 15 14 13 46 46 H 1.08995 * 109.46743 * 300.00041 * 16 15 14 47 47 H 1.09003 * 109.46752 * 59.99490 * 16 15 14 48 48 H 0.96997 * 120.00483 * 0.02562 * 19 17 16 49 49 H 0.96993 * 120.00182 * 180.02562 * 23 22 20 50 50 H 1.09006 * 110.41488 * 280.70821 * 28 6 5 51 51 H 1.08995 * 110.41444 * 158.26252 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7694 1.2250 5 6 2.8806 -1.9416 0.6375 6 7 3.2693 -1.4835 -0.7212 7 6 3.6067 -2.6231 -1.5846 8 6 4.9010 -3.2394 -1.1199 9 8 5.4847 -2.7753 -0.1634 10 7 5.4095 -4.3070 -1.7666 11 6 6.6681 -4.9057 -1.3152 12 6 7.0142 -6.0750 -2.2008 13 6 8.1929 -6.1401 -2.7686 14 6 9.2608 -5.1410 -2.4049 15 7 10.4846 -5.8529 -2.0131 16 6 11.5499 -4.9086 -1.6504 17 6 12.7862 -5.6739 -1.2546 18 8 12.7808 -6.8867 -1.2733 19 7 13.8984 -5.0107 -0.8808 20 6 15.0234 -5.7070 -0.5213 21 1 15.0185 -6.7868 -0.5379 22 6 16.1698 -5.0232 -0.1354 23 7 16.1757 -3.7093 -0.1146 24 14 17.7029 -5.9718 0.3538 25 1 18.5455 -6.2041 -0.8467 26 1 18.4716 -5.1883 1.3541 27 1 17.3103 -7.2771 0.9432 28 6 2.0662 -0.7721 -1.2246 29 1 -0.3634 0.5033 0.8960 30 1 -0.3634 -1.0275 -0.0121 31 1 -0.3634 0.5244 -0.8838 32 1 2.7082 -0.1252 1.8253 33 1 1.2388 -1.1467 1.8265 34 1 3.7671 -2.1297 1.2432 35 1 2.2647 -2.8387 0.5745 36 1 2.8111 -3.3664 -1.5325 37 1 3.7165 -2.2797 -2.6132 38 1 4.9425 -4.6784 -2.5313 39 1 7.4636 -4.1625 -1.3680 40 1 6.5589 -5.2486 -0.2863 41 1 6.2905 -6.8590 -2.3674 42 1 8.3995 -6.9100 -3.4974 43 1 9.4704 -4.5040 -3.2643 44 1 8.9157 -4.5269 -1.5731 45 1 10.3019 -6.4983 -1.2593 46 1 11.7753 -4.2698 -2.5043 47 1 11.2203 -4.2932 -0.8133 48 1 13.9029 -4.0408 -0.8662 49 1 16.9761 -3.2321 0.1544 50 1 1.3228 -1.4863 -1.5791 51 1 2.3393 -0.0797 -2.0208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274371592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:13 Heat of formation + Delta-G solvation = -71.429954 kcal Electronic energy + Delta-G solvation = -27784.347789 eV Core-core repulsion = 23717.892325 eV Total energy + Delta-G solvation = -4066.455464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.04899 -40.19558 -39.56725 -38.06472 -36.24502 -35.73556 -34.41714 -33.81480 -33.24486 -30.74240 -29.59878 -28.68912 -27.13912 -26.32337 -25.34069 -24.48123 -22.48171 -21.52482 -21.19301 -20.91625 -20.01062 -19.63463 -18.18002 -17.87886 -17.43254 -17.09150 -16.87167 -16.67804 -16.44749 -16.20350 -15.94744 -15.58747 -15.37780 -15.13495 -14.83064 -14.72625 -14.50890 -14.35959 -13.94712 -13.86184 -13.59508 -13.49715 -13.25618 -13.18470 -13.13744 -12.89085 -12.76628 -12.68053 -12.42751 -12.35382 -12.12201 -11.86466 -11.78166 -11.60675 -11.51860 -11.41232 -10.93495 -10.38548 -10.35141 -10.03336 -9.93918 -9.44447 -9.33214 -8.47581 -5.96913 0.99667 1.37828 1.41488 1.54661 1.65240 2.02701 2.22884 2.29509 2.98312 3.09315 3.19366 3.53193 3.65158 3.69099 3.78144 3.96027 4.01024 4.06332 4.16390 4.27053 4.28603 4.29861 4.36885 4.42459 4.51302 4.52430 4.53077 4.63550 4.69364 4.69831 4.76349 4.79876 4.86352 4.98259 5.01458 5.14283 5.22719 5.29724 5.38311 5.39840 5.41304 5.57248 5.71860 5.84825 5.85987 5.93330 6.06535 6.36349 6.58201 6.60852 7.10784 7.30400 7.53890 8.08829 8.69831 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.001447 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.806057 B =19350.650096 C =20463.870722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.034 3.966 6 N -0.521 5.521 7 C 0.030 3.970 8 C 0.506 3.494 9 O -0.572 6.572 10 N -0.713 5.713 11 C 0.139 3.861 12 C -0.163 4.163 13 C -0.124 4.124 14 C 0.071 3.929 15 N -0.676 5.676 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.038 3.962 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.418 0.582 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.345 0.655 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.063 0.937 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.574 6.218 -5.248 36.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.094 4.094 6 N -0.245 5.245 7 C -0.101 4.101 8 C 0.293 3.707 9 O -0.450 6.450 10 N -0.367 5.367 11 C 0.016 3.984 12 C -0.182 4.182 13 C -0.144 4.144 14 C -0.056 4.056 15 N -0.308 5.308 16 C -0.069 4.069 17 C 0.224 3.776 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.089 4.089 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.146 0.854 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.146 0.854 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.163 0.837 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -34.302 6.162 -5.166 35.232 hybrid contribution 0.152 -0.324 0.903 0.971 sum -34.150 5.838 -4.263 34.907 Atomic orbital electron populations 1.21823 0.93118 1.02173 1.02521 1.21880 0.96549 0.99471 0.93684 0.90703 1.22399 0.99198 0.96454 0.97808 1.23102 0.98384 0.97072 0.90801 1.65112 1.34756 1.22391 1.02277 1.22206 0.94029 0.94051 0.99796 1.21126 0.87404 0.79660 0.82549 1.90712 1.62483 1.62510 1.29341 1.45823 1.24700 1.31521 1.34645 1.20392 0.86333 0.94170 0.97522 1.22838 0.98769 0.98220 0.98340 1.22836 0.93751 0.99233 0.98557 1.21311 0.88280 0.95429 1.00616 1.60077 1.06813 1.18358 1.45550 1.21553 0.89890 0.94138 1.01338 1.20825 0.85876 0.88345 0.82509 1.90483 1.84975 1.15802 1.59641 1.41933 1.10595 1.09364 1.59033 1.19701 0.90511 0.92705 1.43702 0.90216 1.26070 1.01827 0.96632 0.96698 1.69674 1.31194 1.07223 1.48020 0.84903 0.77066 0.77862 0.78345 1.19526 1.19522 1.19706 1.23292 0.90235 0.97553 0.97852 0.92102 0.92358 0.91650 0.92151 0.89969 0.92055 0.93349 0.89143 0.85435 0.74525 0.91706 0.92257 0.83663 0.85417 0.89624 0.93719 0.83701 0.87642 0.91957 0.76990 0.91260 0.91924 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.91 71.98 0.64 -0.29 16 2 C -0.10 -1.03 3.65 -9.90 -0.04 -1.06 16 3 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -1.62 6.65 31.49 0.21 -1.41 16 5 C 0.03 0.59 5.80 86.45 0.50 1.09 16 6 N -0.52 -8.54 5.06 -886.04 -4.49 -13.02 16 7 C 0.03 0.36 5.30 85.56 0.45 0.81 16 8 C 0.51 9.71 7.63 87.66 0.67 10.38 16 9 O -0.57 -17.14 14.84 -3.03 -0.04 -17.19 16 10 N -0.71 -10.01 5.55 -466.77 -2.59 -12.60 16 11 C 0.14 2.54 5.76 85.64 0.49 3.03 16 12 C -0.16 -2.39 9.63 25.66 0.25 -2.14 16 13 C -0.12 -2.33 9.77 25.66 0.25 -2.08 16 14 C 0.07 1.70 5.77 85.56 0.49 2.19 16 15 N -0.68 -21.99 6.12 -521.97 -3.19 -25.18 16 16 C 0.06 2.27 6.17 85.56 0.53 2.80 16 17 C 0.44 21.51 7.82 87.66 0.69 22.20 16 18 O -0.62 -35.37 15.78 -3.07 -0.05 -35.42 16 19 N -0.57 -30.26 5.29 -306.98 -1.62 -31.88 16 20 C -0.34 -19.57 9.68 84.04 0.81 -18.75 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -50.65 13.05 21.66 0.28 -50.36 16 24 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 C 0.04 0.40 6.03 86.45 0.52 0.92 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.35 8.12 -2.39 -0.02 0.34 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 0.86 7.71 -2.39 -0.02 0.85 16 34 H 0.06 1.46 6.91 -2.39 -0.02 1.45 16 35 H 0.05 0.69 7.82 -2.39 -0.02 0.67 16 36 H 0.09 0.62 7.88 -2.39 -0.02 0.60 16 37 H 0.13 0.93 8.13 -2.39 -0.02 0.91 16 38 H 0.42 2.78 8.46 -92.71 -0.78 2.00 16 39 H 0.06 1.45 5.30 -2.39 -0.01 1.44 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.07 5.29 -2.39 -0.01 1.05 16 45 H 0.34 11.84 8.42 -89.69 -0.76 11.08 16 46 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 47 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 49 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.06 0.45 7.70 -2.38 -0.02 0.43 16 51 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -76.99 415.13 -4.06 -81.05 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: -1.32 Total: 41.49 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.94 Total: 17.48 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -11.61 Total: -133.06 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.09 Total: -52.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -76.99 -4.06 -81.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274371592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.616 kcal (2) G-P(sol) polarization free energy of solvation -76.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds