Wall clock time and date at job start Tue Mar 31 2020 22:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 C 1.50695 * 109.47196 * 175.00240 * 4 2 1 6 6 O 1.21283 * 120.00019 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00071 * 180.02562 * 5 4 2 8 8 C 1.46940 * 120.70384 * 359.97438 * 7 5 4 9 9 C 1.53184 * 108.92641 * 125.81674 * 8 7 5 10 10 C 1.53163 * 109.28025 * 55.21585 * 9 8 7 11 11 C 1.52240 * 109.65050 * 299.83121 * 10 9 8 12 12 C 1.54495 * 110.24694 * 297.10670 * 11 10 9 13 13 C 1.55028 * 101.52419 * 276.20505 * 12 11 10 14 14 N 1.47484 * 104.90066 * 323.64950 * 13 12 11 15 15 C 1.36938 * 125.66259 * 204.00769 * 14 13 12 16 16 H 1.07994 * 120.00247 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99667 * 0.02562 * 15 14 13 18 18 N 1.31618 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46817 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47364 * 119.99619 * 19 17 15 22 22 H 1.48504 * 109.47007 * 239.99668 * 19 17 15 23 23 C 1.47193 * 108.67851 * 24.01149 * 14 13 12 24 24 C 1.47083 * 120.70414 * 179.72183 * 7 5 4 25 25 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 26 26 C 1.34774 * 119.99618 * 275.00242 * 25 2 1 27 27 N 1.34779 * 120.00064 * 179.97438 * 26 25 2 28 28 O 1.21584 * 120.00489 * 359.97438 * 26 25 2 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 32 32 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 33 33 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 34 34 H 1.08994 * 109.56069 * 245.65323 * 8 7 5 35 35 H 1.08997 * 109.55995 * 5.87602 * 8 7 5 36 36 H 1.09003 * 109.49850 * 175.15559 * 9 8 7 37 37 H 1.08993 * 109.50730 * 295.27358 * 9 8 7 38 38 H 1.09001 * 109.44178 * 59.88730 * 10 9 8 39 39 H 1.08999 * 109.44206 * 179.81004 * 10 9 8 40 40 H 1.09000 * 111.01620 * 34.26512 * 12 11 10 41 41 H 1.08997 * 111.01810 * 158.14876 * 12 11 10 42 42 H 1.09001 * 110.35519 * 204.79309 * 13 12 11 43 43 H 1.09003 * 110.44455 * 82.54732 * 13 12 11 44 44 H 0.97000 * 120.00185 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.90661 * 239.11775 * 23 14 13 46 46 H 1.08996 * 110.07143 * 117.93795 * 23 14 13 47 47 H 1.08995 * 109.58031 * 352.28425 * 24 7 5 48 48 H 1.08998 * 109.58183 * 112.68825 * 24 7 5 49 49 H 0.96990 * 120.00057 * 94.99539 * 25 2 1 50 50 H 0.97007 * 119.99688 * 359.97438 * 27 26 25 51 51 H 0.96993 * 120.00487 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 8 4.1449 -0.0205 -0.4445 7 7 4.2148 -1.1797 -2.3348 8 6 3.4998 -1.9031 -3.3953 9 6 3.8985 -1.3163 -4.7529 10 6 5.4228 -1.3622 -4.8957 11 6 6.0659 -0.5442 -3.7844 12 6 5.6548 0.9400 -3.9065 13 6 6.6795 1.4606 -4.9469 14 7 7.9295 0.7401 -4.6414 15 6 9.1931 1.1660 -4.9532 16 1 10.0478 0.5631 -4.6845 17 6 9.3754 2.3732 -5.6137 18 7 8.3337 3.1083 -5.9408 19 14 11.0990 2.9545 -6.0385 20 1 12.0894 1.9544 -5.5651 21 1 11.2195 3.1127 -7.5101 22 1 11.3585 4.2588 -5.3776 23 6 7.5935 -0.5127 -3.9457 24 6 5.6801 -1.0803 -2.4153 25 7 2.0184 -0.6906 1.1962 26 6 2.1471 -0.0182 2.3571 27 7 2.5959 -0.6536 3.4577 28 8 1.8583 1.1616 2.4116 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2617 -2.1369 34 1 3.7677 -2.9591 -3.3612 35 1 2.4250 -1.7944 -3.2504 36 1 3.4405 -1.9011 -5.5507 37 1 3.5580 -0.2829 -4.8169 38 1 5.7626 -2.3957 -4.8286 39 1 5.7093 -0.9482 -5.8625 40 1 4.6355 1.0338 -4.2811 41 1 5.7684 1.4569 -2.9536 42 1 6.8234 2.5350 -4.8325 43 1 6.3460 1.2291 -5.9585 44 1 8.4610 3.9517 -6.4027 45 1 8.0707 -0.5327 -2.9659 46 1 7.9222 -1.3681 -4.5359 47 1 6.0431 -0.4020 -1.6432 48 1 6.1215 -2.0669 -2.2746 49 1 2.2490 -1.6317 1.1526 50 1 2.8260 -1.5950 3.4143 51 1 2.6889 -0.1697 4.2931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281084799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:21 Heat of formation + Delta-G solvation = -43.935737 kcal Electronic energy + Delta-G solvation = -31079.029217 eV Core-core repulsion = 27013.765991 eV Total energy + Delta-G solvation = -4065.263226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.64877 -39.83863 -38.47217 -36.03728 -35.67205 -33.80536 -33.09786 -31.86902 -31.19217 -30.15895 -28.73828 -28.17041 -25.67632 -25.22263 -23.58548 -22.49546 -22.13293 -20.87483 -20.17418 -19.34675 -18.39538 -18.11898 -17.32776 -17.10519 -16.75768 -15.87831 -15.74634 -15.21639 -15.05929 -14.77330 -14.62789 -14.27873 -14.06878 -13.83600 -13.36317 -13.31581 -13.25983 -13.13338 -12.74492 -12.46206 -12.32753 -12.12698 -12.05297 -11.95544 -11.52519 -11.29187 -11.06740 -10.98045 -10.88991 -10.75108 -10.53193 -10.31304 -10.08938 -10.04333 -9.97508 -9.77920 -9.68816 -9.63305 -9.42010 -9.10484 -8.61111 -8.47119 -6.78983 -5.61535 -3.02988 2.64537 2.81410 2.98957 3.23755 3.41841 3.47198 3.49796 4.31004 4.38266 4.44271 4.51888 4.72865 4.88357 4.97251 5.01839 5.12341 5.18607 5.23280 5.28361 5.31258 5.37036 5.47685 5.53875 5.57943 5.69917 5.82108 5.85431 5.90765 5.95540 6.00024 6.01384 6.14529 6.29292 6.40504 6.42154 6.46797 6.52092 6.59029 6.64723 6.75368 6.81308 6.84517 6.96679 7.45610 7.56734 7.67050 7.87321 7.90850 8.23621 8.40648 8.59183 9.25849 9.86871 10.52344 11.42197 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002713 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.527409 B =10317.590838 C =11124.245060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.098 0.902 4 C -0.150 4.150 5 C 0.509 3.491 6 O -0.527 6.527 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.138 4.138 10 C -0.099 4.099 11 C -0.084 4.084 12 C -0.130 4.130 13 C 0.155 3.845 14 N -0.602 5.602 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.150 3.850 24 C 0.131 3.869 25 N -0.729 5.729 26 C 0.712 3.288 27 N -0.871 5.871 28 O -0.595 6.595 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.023 0.977 46 H 0.022 0.978 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.391 0.609 50 H 0.394 0.606 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -15.644 9.936 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.069 3.931 3 H 0.116 0.884 4 C -0.191 4.191 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.341 5.341 8 C -0.015 4.015 9 C -0.176 4.176 10 C -0.137 4.137 11 C -0.085 4.085 12 C -0.168 4.168 13 C 0.030 3.970 14 N -0.328 5.328 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.023 3.977 24 C 0.009 3.991 25 N -0.384 5.384 26 C 0.410 3.590 27 N -0.438 5.438 28 O -0.473 6.473 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.224 0.776 50 H 0.221 0.779 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -17.673 -14.138 10.170 24.812 hybrid contribution 1.225 -0.590 -0.193 1.373 sum -16.448 -14.727 9.977 24.228 Atomic orbital electron populations 1.22214 0.94975 1.01993 1.03002 1.20530 0.93041 0.98008 0.81522 0.88423 1.22094 0.93513 1.03163 1.00299 1.20505 0.89657 0.78676 0.81532 1.90767 1.69901 1.41353 1.38277 1.48152 1.07763 1.54442 1.23736 1.21735 0.96412 0.95811 0.87523 1.22006 0.97533 1.02099 0.95912 1.21331 0.93552 0.99273 0.99500 1.21265 0.96815 0.96925 0.93543 1.23008 0.99173 0.93540 1.01105 1.21912 0.82698 1.00078 0.92286 1.44531 1.02816 1.18421 1.67074 1.19118 0.82868 1.02275 1.30638 0.90518 1.24783 0.97497 0.97427 1.01040 1.69826 1.27062 1.14259 1.45877 0.86013 0.83447 0.78450 0.77682 1.20566 1.21823 1.21764 1.21138 0.90585 0.90442 0.95521 1.21432 0.78523 1.01021 0.98147 1.44921 1.71440 1.13097 1.08913 1.15858 0.77701 0.84829 0.80579 1.42962 1.73896 1.14708 1.12249 1.90956 1.57402 1.14273 1.84647 0.91383 0.92568 0.91638 0.88649 0.87269 0.91520 0.90182 0.91012 0.90894 0.92391 0.90818 0.92530 0.92375 0.87967 0.97220 0.93857 0.95941 0.95978 0.88969 0.92190 0.77589 0.77870 0.75596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.17 1.75 2.14 -67.93 -0.15 1.60 16 3 H 0.10 1.37 7.39 -51.93 -0.38 0.98 16 4 C -0.15 -1.20 3.59 -27.88 -0.10 -1.30 16 5 C 0.51 6.37 7.56 -10.99 -0.08 6.28 16 6 O -0.53 -8.99 14.78 5.56 0.08 -8.90 16 7 N -0.61 -7.24 2.83 -173.36 -0.49 -7.73 16 8 C 0.11 0.93 6.33 -3.71 -0.02 0.91 16 9 C -0.14 -1.44 5.89 -26.55 -0.16 -1.60 16 10 C -0.10 -1.39 4.55 -27.03 -0.12 -1.51 16 11 C -0.08 -1.41 0.55 -154.28 -0.09 -1.50 16 12 C -0.13 -2.53 5.72 -24.87 -0.14 -2.68 16 13 C 0.15 3.81 5.57 -2.43 -0.01 3.80 16 14 N -0.60 -15.57 3.40 -170.23 -0.58 -16.15 16 15 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -27.33 10.09 55.49 0.56 -26.77 16 19 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C 0.15 3.11 6.43 -3.33 -0.02 3.09 16 24 C 0.13 1.93 4.95 -4.23 -0.02 1.91 16 25 N -0.73 -7.12 4.22 -58.67 -0.25 -7.37 16 26 C 0.71 8.83 8.80 -86.92 -0.77 8.06 16 27 N -0.87 -6.97 8.88 27.63 0.25 -6.72 16 28 O -0.59 -10.25 16.84 5.29 0.09 -10.16 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.49 7.93 -51.93 -0.41 0.07 16 33 H 0.11 0.71 7.71 -51.93 -0.40 0.31 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.86 6.22 -51.93 -0.32 0.54 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 40 H 0.06 1.00 5.99 -51.93 -0.31 0.69 16 41 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 42 H 0.10 2.89 5.88 -51.93 -0.31 2.59 16 43 H 0.01 0.25 7.76 -51.93 -0.40 -0.15 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.02 0.48 7.80 -51.93 -0.40 0.07 16 46 H 0.02 0.45 7.83 -51.93 -0.41 0.05 16 47 H 0.09 1.63 6.86 -51.93 -0.36 1.27 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.39 2.77 8.62 -40.82 -0.35 2.41 16 50 H 0.39 1.90 8.84 -40.82 -0.36 1.54 16 51 H 0.41 2.96 8.93 -40.82 -0.36 2.59 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -37.14 391.46 -9.44 -46.58 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.40 Total: 4.59 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.58 Total: 9.31 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.51 Total: -64.74 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.14 -9.44 -46.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281084799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.640 kcal (2) G-P(sol) polarization free energy of solvation -37.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds