Wall clock time and date at job start Tue Mar 31 2020 22:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47612 * 2 1 4 4 C 1.53003 * 109.46721 * 239.99776 * 2 1 3 5 5 C 1.50709 * 109.46655 * 175.00372 * 4 2 1 6 6 O 1.21279 * 120.00082 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.46932 * 120.69973 * 0.02562 * 7 5 4 9 9 C 1.53192 * 108.92517 * 234.13862 * 8 7 5 10 10 C 1.53171 * 109.27241 * 304.77527 * 9 8 7 11 11 C 1.52240 * 109.65342 * 60.17825 * 10 9 8 12 12 C 1.54497 * 110.25144 * 62.91396 * 11 10 9 13 13 C 1.55028 * 101.51945 * 83.78451 * 12 11 10 14 14 N 1.47484 * 104.90567 * 36.35499 * 13 12 11 15 15 C 1.36936 * 125.66484 * 156.25283 * 14 13 12 16 16 H 1.08001 * 120.00285 * 179.69765 * 15 14 13 17 17 C 1.38816 * 119.99847 * 359.69050 * 15 14 13 18 18 N 1.31613 * 119.99787 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47056 * 60.00008 * 19 17 15 21 21 H 1.48493 * 109.46989 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46923 * 300.00290 * 19 17 15 23 23 C 1.47196 * 108.67297 * 335.99003 * 14 13 12 24 24 C 1.47079 * 120.70141 * 179.97438 * 7 5 4 25 25 N 1.46500 * 109.46846 * 120.00080 * 2 1 3 26 26 C 1.34780 * 119.99865 * 274.99873 * 25 2 1 27 27 N 1.34780 * 119.99990 * 180.02562 * 26 25 2 28 28 O 1.21585 * 119.99995 * 359.97438 * 26 25 2 29 29 H 1.08995 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46953 * 300.00349 * 1 2 3 31 31 H 1.08999 * 109.46517 * 59.99853 * 1 2 3 32 32 H 1.08989 * 109.47121 * 55.00541 * 4 2 1 33 33 H 1.08997 * 109.47257 * 295.00043 * 4 2 1 34 34 H 1.09008 * 109.55866 * 114.30807 * 8 7 5 35 35 H 1.08996 * 109.56701 * 353.97303 * 8 7 5 36 36 H 1.08995 * 109.50783 * 184.83940 * 9 8 7 37 37 H 1.09005 * 109.53547 * 64.73151 * 9 8 7 38 38 H 1.08998 * 109.44315 * 300.12104 * 10 9 8 39 39 H 1.09004 * 109.41126 * 180.21391 * 10 9 8 40 40 H 1.08992 * 111.02163 * 201.84112 * 12 11 10 41 41 H 1.08996 * 111.01565 * 325.72886 * 12 11 10 42 42 H 1.09006 * 110.35503 * 277.49738 * 13 12 11 43 43 H 1.09000 * 110.35709 * 155.21379 * 13 12 11 44 44 H 0.97003 * 119.99806 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.90656 * 120.87813 * 23 14 13 46 46 H 1.09004 * 109.90845 * 242.14404 * 23 14 13 47 47 H 1.09003 * 109.57832 * 7.77475 * 24 7 5 48 48 H 1.08996 * 109.58090 * 247.37729 * 24 7 5 49 49 H 0.97007 * 120.00106 * 94.99559 * 25 2 1 50 50 H 0.96998 * 119.99625 * 0.02562 * 27 26 25 51 51 H 0.96999 * 119.99974 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6151 -1.3127 6 8 4.1450 -0.0205 -0.4445 7 7 4.2149 -1.1807 -2.3342 8 6 3.4998 -1.9041 -3.3945 9 6 4.0923 -3.3109 -3.5228 10 6 5.6018 -3.2041 -3.7600 11 6 6.2550 -2.4872 -2.5865 12 6 6.0685 -3.3052 -1.2892 13 6 7.2420 -4.3135 -1.3876 14 7 8.3475 -3.5507 -1.9970 15 6 9.6802 -3.8404 -1.8742 16 1 10.4152 -3.2201 -2.3656 17 6 10.0866 -4.9313 -1.1180 18 7 9.1909 -5.6874 -0.5196 19 14 11.9046 -5.3261 -0.9500 20 1 12.6053 -4.1755 -0.3252 21 1 12.0728 -6.5306 -0.0981 22 1 12.4809 -5.5862 -2.2937 23 6 7.7800 -2.4299 -2.7642 24 6 5.6806 -1.0860 -2.4117 25 7 2.0183 -0.6906 1.1962 26 6 2.1470 -0.0183 2.3572 27 7 2.5967 -0.6535 3.4575 28 8 1.8583 1.1616 2.4116 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.6134 -1.3726 -4.3394 35 1 2.4427 -1.9752 -3.1388 36 1 3.6275 -3.8263 -4.3633 37 1 3.9067 -3.8697 -2.6055 38 1 5.7863 -2.6430 -4.6761 39 1 6.0251 -4.2040 -3.8555 40 1 6.1711 -2.6709 -0.4089 41 1 5.1087 -3.8216 -1.2873 42 1 6.9666 -5.1550 -2.0233 43 1 7.5251 -4.6639 -0.3951 44 1 9.4748 -6.4499 0.0085 45 1 8.1634 -1.4849 -2.3793 46 1 8.0352 -2.5351 -3.8187 47 1 6.0672 -0.6447 -1.4931 48 1 5.9621 -0.4667 -3.2634 49 1 2.2489 -1.6319 1.1526 50 1 2.8280 -1.5945 3.4138 51 1 2.6897 -0.1695 4.2930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281084800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:26 Heat of formation + Delta-G solvation = -44.583008 kcal Electronic energy + Delta-G solvation = -31287.225720 eV Core-core repulsion = 27221.934427 eV Total energy + Delta-G solvation = -4065.291293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.63737 -39.78988 -38.46848 -36.03398 -35.66081 -33.72228 -33.11077 -31.87889 -31.15334 -30.15883 -28.76876 -28.17531 -25.68929 -25.22280 -23.60569 -22.46201 -22.14750 -20.81127 -20.20196 -19.33059 -18.34340 -18.10834 -17.28732 -17.10651 -16.76781 -15.84562 -15.74251 -15.19306 -15.06457 -14.76675 -14.61727 -14.22869 -14.03812 -13.84206 -13.44908 -13.34264 -13.28813 -13.09390 -12.71113 -12.46862 -12.34629 -12.13417 -12.05924 -11.94992 -11.55526 -11.31849 -11.06003 -11.00715 -10.89337 -10.76688 -10.56070 -10.26301 -10.13645 -10.07608 -10.01106 -9.71155 -9.69609 -9.63984 -9.45055 -9.05341 -8.63506 -8.47165 -6.81851 -5.64414 -3.05611 2.65656 2.88331 2.98369 3.29751 3.40680 3.44883 3.46018 4.34015 4.40278 4.48976 4.49704 4.71141 4.90187 4.97021 5.01304 5.10416 5.17825 5.22614 5.28945 5.30152 5.35375 5.46823 5.51668 5.56798 5.67753 5.81755 5.84757 5.89629 5.93106 5.98626 6.00374 6.13300 6.26341 6.36602 6.44660 6.47327 6.50823 6.61371 6.67335 6.71733 6.81516 6.90433 6.94320 7.45596 7.52542 7.63528 7.86714 7.94554 8.23792 8.37231 8.65577 9.23156 9.84129 10.49626 11.39268 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003051 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.122509 B = 9176.280028 C =10480.919111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.096 0.904 4 C -0.151 4.151 5 C 0.509 3.491 6 O -0.527 6.527 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.136 4.136 10 C -0.100 4.100 11 C -0.083 4.083 12 C -0.129 4.129 13 C 0.156 3.844 14 N -0.602 5.602 15 C -0.222 4.222 16 H 0.076 0.924 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.149 3.851 24 C 0.130 3.870 25 N -0.729 5.729 26 C 0.714 3.286 27 N -0.869 5.869 28 O -0.600 6.600 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.009 0.991 43 H 0.102 0.898 44 H 0.251 0.749 45 H 0.024 0.976 46 H 0.023 0.977 47 H 0.092 0.908 48 H 0.061 0.939 49 H 0.394 0.606 50 H 0.396 0.604 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 5.608 -3.164 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 H 0.114 0.886 4 C -0.191 4.191 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.341 5.341 8 C -0.015 4.015 9 C -0.174 4.174 10 C -0.137 4.137 11 C -0.084 4.084 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.022 3.978 24 C 0.008 3.992 25 N -0.384 5.384 26 C 0.412 3.588 27 N -0.437 5.437 28 O -0.478 6.478 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.120 0.880 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.110 0.890 48 H 0.079 0.921 49 H 0.227 0.773 50 H 0.224 0.776 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.685 6.789 -2.729 21.001 hybrid contribution 1.302 -1.170 0.137 1.756 sum -18.383 5.619 -2.592 19.396 Atomic orbital electron populations 1.22218 0.95044 1.02106 1.02845 1.20497 0.92994 0.97814 0.81683 0.88629 1.22099 0.93472 1.03394 1.00165 1.20507 0.89688 0.78971 0.81205 1.90766 1.69908 1.41877 1.37754 1.48142 1.07651 1.54073 1.24228 1.21743 0.95980 0.92971 0.90837 1.22002 0.96982 0.95938 1.02523 1.21340 0.93755 1.01604 0.97026 1.21336 0.96159 0.94197 0.96725 1.22988 0.99601 0.98855 0.95258 1.21913 0.83879 0.90299 1.00832 1.44514 1.02358 1.28916 1.57034 1.19038 0.81382 1.08957 1.25620 0.90612 1.24766 0.97847 0.97813 1.00232 1.69799 1.30902 1.19134 1.37321 0.86161 0.84425 0.77468 0.77507 1.21169 1.21604 1.21275 1.21160 0.89431 0.92221 0.94988 1.21532 0.78238 0.96623 1.02821 1.44931 1.71369 1.13291 1.08828 1.15839 0.77600 0.84766 0.80586 1.42967 1.73572 1.14952 1.12186 1.90931 1.57798 1.14327 1.84770 0.92463 0.91631 0.91550 0.87486 0.88438 0.91443 0.90170 0.91030 0.91008 0.92347 0.90849 0.92470 0.92612 0.97296 0.87982 0.93791 0.95848 0.95947 0.88960 0.92099 0.77312 0.77606 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.18 1.77 2.14 -67.93 -0.15 1.62 16 3 H 0.10 1.28 7.39 -51.93 -0.38 0.90 16 4 C -0.15 -1.21 3.59 -27.88 -0.10 -1.31 16 5 C 0.51 6.37 7.56 -10.98 -0.08 6.29 16 6 O -0.53 -8.99 14.78 5.56 0.08 -8.91 16 7 N -0.61 -7.24 2.82 -173.09 -0.49 -7.73 16 8 C 0.11 0.93 6.32 -3.71 -0.02 0.90 16 9 C -0.14 -1.39 5.90 -26.54 -0.16 -1.54 16 10 C -0.10 -1.37 4.55 -27.03 -0.12 -1.49 16 11 C -0.08 -1.36 0.55 -154.06 -0.09 -1.44 16 12 C -0.13 -2.39 5.73 -24.87 -0.14 -2.53 16 13 C 0.16 3.71 5.57 -2.43 -0.01 3.69 16 14 N -0.60 -15.30 3.40 -170.23 -0.58 -15.87 16 15 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 19 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.15 3.05 6.43 -3.33 -0.02 3.03 16 24 C 0.13 1.92 4.98 -4.01 -0.02 1.90 16 25 N -0.73 -7.80 4.22 -58.67 -0.25 -8.05 16 26 C 0.71 9.44 8.80 -86.91 -0.77 8.67 16 27 N -0.87 -8.21 8.88 27.64 0.25 -7.97 16 28 O -0.60 -10.47 16.84 5.29 0.09 -10.38 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.61 7.93 -51.94 -0.41 0.19 16 33 H 0.10 0.58 7.71 -51.93 -0.40 0.18 16 34 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.47 5.94 -51.93 -0.31 0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.80 6.23 -51.93 -0.32 0.48 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.19 7.49 -51.93 -0.39 0.80 16 40 H 0.06 1.16 7.91 -51.93 -0.41 0.74 16 41 H 0.06 0.92 6.00 -51.93 -0.31 0.61 16 42 H 0.01 0.23 7.76 -51.93 -0.40 -0.17 16 43 H 0.10 2.79 5.88 -51.93 -0.31 2.49 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.49 7.80 -51.93 -0.40 0.09 16 46 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 47 H 0.09 1.62 6.87 -51.93 -0.36 1.26 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.39 3.44 8.62 -40.82 -0.35 3.09 16 50 H 0.40 2.73 8.84 -40.82 -0.36 2.37 16 51 H 0.41 3.48 8.93 -40.82 -0.36 3.11 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -36.23 391.52 -9.44 -45.67 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.40 Total: 6.35 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -1.58 Total: 10.11 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.51 Total: -65.85 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.23 -9.44 -45.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281084800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.084 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds