Wall clock time and date at job start Tue Mar 31 2020 22:04:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08994 * 109.47002 * 2 1
4 4 N 1.46498 * 109.46805 * 240.00416 * 2 1 3
5 5 C 1.34776 * 120.00431 * 85.00258 * 4 2 1
6 6 O 1.21280 * 119.99472 * 359.97438 * 5 4 2
7 7 C 1.50691 * 120.00085 * 179.97438 * 5 4 2
8 8 N 1.46903 * 109.47060 * 179.97438 * 7 5 4
9 9 C 1.47187 * 110.99925 * 188.93971 * 8 7 5
10 10 C 1.52995 * 108.71968 * 167.62130 * 9 8 7
11 11 N 1.46013 * 110.03922 * 50.29915 * 10 9 8
12 12 C 1.33708 * 122.92673 * 341.84606 * 11 10 9
13 13 O 1.21284 * 118.62383 * 181.68569 * 12 11 10
14 14 C 1.46895 * 111.00289 * 66.04608 * 8 7 5
15 15 C 1.53001 * 109.47017 * 120.00295 * 2 1 3
16 16 C 1.53032 * 109.46466 * 60.06874 * 15 2 1
17 17 C 1.53191 * 109.31635 * 178.61394 * 16 15 2
18 18 N 1.46929 * 108.77529 * 54.63636 * 17 16 15
19 19 C 1.36927 * 120.63127 * 126.41436 * 18 17 16
20 20 H 1.08001 * 120.00248 * 207.65976 * 19 18 17
21 21 C 1.38817 * 120.00037 * 27.66420 * 19 18 17
22 22 N 1.31618 * 120.00060 * 17.36851 * 21 19 18
23 23 Si 1.86796 * 119.99949 * 197.36488 * 21 19 18
24 24 H 1.48499 * 109.47308 * 59.99962 * 23 21 19
25 25 H 1.48498 * 109.47264 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.47367 * 300.00079 * 23 21 19
27 27 C 1.46925 * 118.73541 * 306.39229 * 18 17 16
28 28 C 1.53046 * 109.45864 * 299.99760 * 15 2 1
29 29 H 1.09001 * 109.47337 * 59.99926 * 1 2 3
30 30 H 1.09004 * 109.47029 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47181 * 299.99577 * 1 2 3
32 32 H 0.97004 * 119.99593 * 264.99080 * 4 2 1
33 33 H 1.09002 * 109.47636 * 59.99791 * 7 5 4
34 34 H 1.09000 * 109.47406 * 299.99597 * 7 5 4
35 35 H 1.08998 * 109.59577 * 287.40408 * 9 8 7
36 36 H 1.09001 * 109.59550 * 47.86106 * 9 8 7
37 37 H 1.09005 * 109.37217 * 290.12583 * 10 9 8
38 38 H 1.08996 * 109.37994 * 170.47793 * 10 9 8
39 39 H 0.97002 * 118.53102 * 162.12712 * 11 10 9
40 40 H 1.09000 * 109.38785 * 53.50523 * 14 8 7
41 41 H 1.09004 * 109.38387 * 293.82680 * 14 8 7
42 42 H 1.09004 * 109.45739 * 180.02562 * 15 2 1
43 43 H 1.09005 * 109.49654 * 298.57026 * 16 15 2
44 44 H 1.09000 * 109.49698 * 58.65974 * 16 15 2
45 45 H 1.08998 * 109.58608 * 294.84769 * 17 16 15
46 46 H 1.08997 * 109.58768 * 174.42469 * 17 16 15
47 47 H 0.96997 * 119.99973 * 180.02562 * 22 21 19
48 48 H 1.08999 * 109.58791 * 293.82505 * 27 18 17
49 49 H 1.08998 * 109.58518 * 173.39974 * 27 18 17
50 50 H 1.08999 * 109.49861 * 301.34186 * 28 15 2
51 51 H 1.08997 * 109.49501 * 61.40880 * 28 15 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6905 -1.1962
5 6 2.1470 -0.0182 -2.3572
6 8 1.8582 1.1585 -2.4116
7 6 2.6498 -0.7284 -3.5875
8 7 2.6986 0.2154 -4.7121
9 6 2.9800 -0.4843 -5.9761
10 6 2.7157 0.4753 -7.1380
11 7 3.4036 1.7423 -6.9069
12 6 3.8431 2.1215 -5.7024
13 8 4.3774 3.2049 -5.5934
14 6 3.7025 1.2620 -4.4780
15 6 2.0400 -0.7213 1.2492
16 6 1.5312 -2.1646 1.2481
17 6 2.0721 -2.8935 2.4822
18 7 1.7086 -2.1265 3.6815
19 6 1.0455 -2.7261 4.7187
20 1 0.4035 -2.1403 5.3599
21 6 1.1986 -4.0869 4.9462
22 7 2.2123 -4.7337 4.4110
23 14 -0.0340 -5.0001 6.0121
24 1 -1.3874 -4.8868 5.4116
25 1 0.3506 -6.4319 6.0977
26 1 -0.0455 -4.4078 7.3738
27 6 2.0706 -0.7040 3.7469
28 6 1.5297 0.0003 2.4987
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 2.2491 -1.6317 -1.1526
33 1 1.9776 -1.5507 -3.8326
34 1 3.6492 -1.1202 -3.3980
35 1 4.0226 -0.8018 -5.9939
36 1 2.3292 -1.3541 -6.0652
37 1 1.6439 0.6556 -7.2214
38 1 3.0789 0.0303 -8.0643
39 1 3.5445 2.3372 -7.6600
40 1 4.6620 0.7983 -4.2493
41 1 3.3912 1.8800 -3.6358
42 1 3.1300 -0.7208 1.2492
43 1 0.4415 -2.1662 1.2731
44 1 1.8756 -2.6710 0.3464
45 1 3.1570 -2.9723 2.4137
46 1 1.6342 -3.8900 2.5391
47 1 2.3190 -5.6846 4.5696
48 1 3.1554 -0.6043 3.7815
49 1 1.6317 -0.2559 4.6384
50 1 1.8731 1.0348 2.4871
51 1 0.4400 -0.0212 2.5116
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001284718847.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:04:48
Heat of formation + Delta-G solvation = -68.385163 kcal
Electronic energy + Delta-G solvation = -30173.162029 eV
Core-core repulsion = 26106.838596 eV
Total energy + Delta-G solvation = -4066.323432 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-41.57048 -40.82831 -39.51747 -38.12614 -36.74013 -35.50065 -34.49075 -32.72668
-31.58534 -30.78032 -30.57759 -29.38183 -27.12384 -26.02565 -24.78207 -24.01674
-23.77752 -22.16363 -21.21894 -20.25956 -20.13716 -18.65347 -18.42959 -18.33915
-17.51717 -17.09300 -16.82086 -16.66702 -16.18179 -15.78541 -15.66759 -15.58413
-15.42260 -15.29573 -15.00011 -14.67879 -14.59626 -14.15129 -14.06404 -13.88815
-13.57475 -13.44598 -13.12907 -12.95775 -12.91134 -12.85155 -12.65486 -12.51590
-12.44047 -12.35486 -12.15544 -11.92482 -11.67000 -11.50604 -11.18464 -11.12147
-10.95365 -10.68513 -10.48549 -10.12259 -9.99722 -9.48006 -8.64078 -7.84843
-5.28770 1.47437 1.48525 1.50058 1.56870 1.72948 2.07481 2.30356
2.53442 2.80179 3.29039 3.56200 3.73237 3.77737 3.85852 3.90496
3.94829 4.06083 4.09100 4.28617 4.34831 4.42242 4.44133 4.47681
4.59168 4.61343 4.63909 4.68397 4.74967 4.78634 4.83444 4.97609
5.01568 5.02079 5.06021 5.20614 5.28526 5.31358 5.36528 5.46746
5.57683 5.60621 5.64571 5.67794 5.71665 5.85978 5.94054 6.21939
6.42484 6.67562 7.11777 7.19008 7.37220 7.91099 8.41738 9.20917
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.026334 B = 0.002067 C = 0.002004
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1063.024435 B =13543.937553 C =13971.933019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.159 3.841
3 H 0.071 0.929
4 N -0.715 5.715
5 C 0.507 3.493
6 O -0.570 6.570
7 C 0.038 3.962
8 N -0.530 5.530
9 C 0.029 3.971
10 C 0.110 3.890
11 N -0.710 5.710
12 C 0.522 3.478
13 O -0.607 6.607
14 C 0.039 3.961
15 C -0.074 4.074
16 C -0.119 4.119
17 C 0.175 3.825
18 N -0.610 5.610
19 C -0.261 4.261
20 H 0.063 0.937
21 C -0.050 4.050
22 N -0.933 5.933
23 Si 0.964 3.036
24 H -0.278 1.278
25 H -0.294 1.294
26 H -0.279 1.279
27 C 0.140 3.860
28 C -0.117 4.117
29 H 0.047 0.953
30 H 0.062 0.938
31 H 0.066 0.934
32 H 0.411 0.589
33 H 0.143 0.857
34 H 0.093 0.907
35 H 0.059 0.941
36 H 0.130 0.870
37 H 0.079 0.921
38 H 0.118 0.882
39 H 0.405 0.595
40 H 0.081 0.919
41 H 0.101 0.899
42 H 0.065 0.935
43 H 0.057 0.943
44 H 0.074 0.926
45 H -0.006 1.006
46 H 0.053 0.947
47 H 0.250 0.750
48 H 0.010 0.990
49 H 0.050 0.950
50 H 0.074 0.926
51 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.450 3.906 -24.863 25.172
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.054 3.946
3 H 0.089 0.911
4 N -0.368 5.368
5 C 0.294 3.706
6 O -0.449 6.449
7 C -0.092 4.092
8 N -0.256 5.256
9 C -0.098 4.098
10 C -0.013 4.013
11 N -0.361 5.361
12 C 0.309 3.691
13 O -0.489 6.489
14 C -0.092 4.092
15 C -0.093 4.093
16 C -0.158 4.158
17 C 0.049 3.951
18 N -0.334 5.334
19 C -0.391 4.391
20 H 0.080 0.920
21 C -0.245 4.245
22 N -0.580 5.580
23 Si 0.792 3.208
24 H -0.204 1.204
25 H -0.220 1.220
26 H -0.205 1.205
27 C 0.015 3.985
28 C -0.156 4.156
29 H 0.066 0.934
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.249 0.751
33 H 0.161 0.839
34 H 0.111 0.889
35 H 0.077 0.923
36 H 0.148 0.852
37 H 0.097 0.903
38 H 0.136 0.864
39 H 0.242 0.758
40 H 0.099 0.901
41 H 0.119 0.881
42 H 0.083 0.917
43 H 0.076 0.924
44 H 0.093 0.907
45 H 0.012 0.988
46 H 0.072 0.928
47 H 0.059 0.941
48 H 0.028 0.972
49 H 0.068 0.932
50 H 0.092 0.908
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 0.048 5.189 -24.689 25.228
hybrid contribution 0.542 -1.045 0.938 1.505
sum 0.590 4.144 -23.751 24.117
Atomic orbital electron populations
1.22149 0.95154 1.02359 1.01670 1.20767 0.94187 0.96048 0.83578
0.91122 1.46112 1.66851 1.14766 1.09115 1.21119 0.77191 0.87142
0.85150 1.90682 1.51104 1.17875 1.85240 1.22166 1.03993 0.95108
0.87958 1.62115 1.47568 1.12713 1.03203 1.22769 1.02448 0.97515
0.87035 1.21819 0.98063 0.82138 0.99250 1.45588 1.58212 1.23013
1.09316 1.20376 0.76622 0.86222 0.85831 1.90742 1.47165 1.24651
1.86364 1.22290 0.95829 0.94865 0.96219 1.21165 0.99712 0.95163
0.93297 1.22062 1.00560 0.95082 0.98078 1.20625 0.94854 0.95024
0.84548 1.44324 1.66903 1.06151 1.16022 1.19455 1.19137 0.92430
1.08127 0.91955 1.25728 0.98742 0.99013 1.01058 1.70169 1.29447
1.08712 1.49632 0.85399 0.79256 0.77210 0.78925 1.20429 1.22009
1.20477 1.21036 0.95989 0.84729 0.96747 1.21941 1.00927 0.98519
0.94237 0.93415 0.91854 0.91471 0.75135 0.83893 0.88885 0.92265
0.85243 0.90322 0.86375 0.75849 0.90143 0.88142 0.91701 0.92421
0.90718 0.98770 0.92822 0.94136 0.97179 0.93156 0.90757 0.91790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.85 8.78 71.98 0.63 -3.22 16
2 C 0.16 3.94 2.40 44.99 0.11 4.04 16
3 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16
4 N -0.72 -14.17 5.00 -442.55 -2.21 -16.39 16
5 C 0.51 10.64 7.55 87.65 0.66 11.30 16
6 O -0.57 -17.30 13.97 -3.03 -0.04 -17.34 16
7 C 0.04 0.44 5.44 85.55 0.47 0.91 16
8 N -0.53 -7.68 4.47 -905.48 -4.05 -11.72 16
9 C 0.03 0.18 5.60 86.25 0.48 0.66 16
10 C 0.11 0.66 7.39 86.47 0.64 1.30 16
11 N -0.71 -9.99 5.52 -466.07 -2.57 -12.56 16
12 C 0.52 12.06 7.81 87.68 0.69 12.74 16
13 O -0.61 -19.91 17.82 -3.04 -0.05 -19.96 16
14 C 0.04 0.79 5.14 85.42 0.44 1.23 16
15 C -0.07 -2.11 2.14 -10.77 -0.02 -2.13 16
16 C -0.12 -3.79 4.81 30.67 0.15 -3.64 16
17 C 0.18 7.87 5.31 86.36 0.46 8.32 16
18 N -0.61 -29.66 2.99 -699.10 -2.09 -31.76 16
19 C -0.26 -14.13 9.59 84.04 0.81 -13.32 16
20 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16
21 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16
22 N -0.93 -53.86 11.19 21.65 0.24 -53.62 16
23 Si 0.96 44.09 29.59 68.60 2.03 46.12 16
24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16
25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
27 C 0.14 5.66 6.52 86.36 0.56 6.23 16
28 C -0.12 -3.66 4.97 30.67 0.15 -3.51 16
29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
30 H 0.06 1.55 6.46 -2.38 -0.02 1.53 16
31 H 0.07 1.68 6.46 -2.39 -0.02 1.66 16
32 H 0.41 6.35 6.84 -92.71 -0.63 5.71 16
33 H 0.14 0.80 7.93 -2.39 -0.02 0.78 16
34 H 0.09 0.71 8.05 -2.39 -0.02 0.69 16
35 H 0.06 0.28 8.08 -2.39 -0.02 0.26 16
36 H 0.13 0.07 7.91 -2.39 -0.02 0.05 16
37 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16
38 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16
39 H 0.41 4.84 8.84 -92.71 -0.82 4.02 16
40 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16
41 H 0.10 2.81 6.00 -2.38 -0.01 2.80 16
42 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16
43 H 0.06 1.92 6.51 -2.38 -0.02 1.91 16
44 H 0.07 1.89 6.46 -2.39 -0.02 1.87 16
45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16
46 H 0.05 2.77 6.04 -2.39 -0.01 2.75 16
47 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16
48 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16
49 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16
50 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
51 H 0.06 2.04 6.51 -2.39 -0.02 2.02 16
Total: -1.00 -78.75 389.08 -2.62 -81.36
By element:
Atomic # 1 Polarization: 17.79 SS G_CDS: -0.50 Total: 17.29 kcal
Atomic # 6 Polarization: 11.95 SS G_CDS: 6.63 Total: 18.58 kcal
Atomic # 7 Polarization: -115.37 SS G_CDS: -10.68 Total: -126.05 kcal
Atomic # 8 Polarization: -37.21 SS G_CDS: -0.10 Total: -37.31 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal
Total: -78.75 -2.62 -81.36 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001284718847.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.979 kcal
(2) G-P(sol) polarization free energy of solvation -78.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.385 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds