Wall clock time and date at job start Tue Mar 31 2020 22:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47155 * 2 1 4 4 N 1.46496 * 109.47333 * 119.99242 * 2 1 3 5 5 C 1.36938 * 120.00490 * 275.00623 * 4 2 1 6 6 H 1.07992 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99859 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00229 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99755 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47285 * 119.99456 * 9 7 5 12 12 H 1.48502 * 109.47110 * 239.99965 * 9 7 5 13 13 C 1.52990 * 109.47162 * 239.99832 * 2 1 3 14 14 H 1.08999 * 109.49825 * 299.93560 * 13 2 1 15 15 C 1.53041 * 109.50004 * 59.99705 * 13 2 1 16 16 C 1.53044 * 109.53986 * 181.34791 * 15 13 2 17 17 C 1.53189 * 109.31301 * 298.63704 * 16 15 13 18 18 N 1.46933 * 108.77770 * 54.63619 * 17 16 15 19 19 C 1.34768 * 120.63355 * 126.36374 * 18 17 16 20 20 O 1.21277 * 120.00331 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99995 * 0.02562 * 19 18 17 22 22 N 1.46897 * 109.47265 * 173.82870 * 21 19 18 23 23 C 1.46913 * 111.00079 * 170.74389 * 22 21 19 24 24 C 1.52986 * 108.87345 * 54.32155 * 23 22 21 25 25 N 1.46004 * 109.95329 * 50.31750 * 24 23 22 26 26 C 1.33718 * 122.92329 * 341.87375 * 25 24 23 27 27 O 1.21282 * 118.62547 * 181.70585 * 26 25 24 28 28 C 1.46900 * 111.00312 * 293.59285 * 22 21 19 29 29 C 1.46926 * 118.73260 * 306.64307 * 18 17 16 30 30 H 1.09001 * 109.47164 * 300.00570 * 1 2 3 31 31 H 1.09000 * 109.47217 * 60.00303 * 1 2 3 32 32 H 1.08996 * 109.47519 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99982 * 94.99665 * 4 2 1 34 34 H 0.96998 * 119.99927 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.45734 * 61.32897 * 15 13 2 36 36 H 1.08995 * 109.44976 * 301.36613 * 15 13 2 37 37 H 1.09000 * 109.49443 * 178.68379 * 16 15 13 38 38 H 1.08998 * 109.51977 * 58.60562 * 16 15 13 39 39 H 1.08996 * 109.59003 * 294.84682 * 17 16 15 40 40 H 1.09002 * 109.70382 * 174.48675 * 17 16 15 41 41 H 1.09002 * 109.46996 * 53.82757 * 21 19 18 42 42 H 1.08999 * 109.47496 * 293.83076 * 21 19 18 43 43 H 1.08992 * 109.45435 * 294.54389 * 23 22 21 44 44 H 1.08993 * 109.58971 * 174.18114 * 23 22 21 45 45 H 1.09006 * 109.37460 * 290.19763 * 24 23 22 46 46 H 1.09007 * 109.37269 * 170.43590 * 24 23 22 47 47 H 0.96991 * 118.54104 * 161.89214 * 25 24 23 48 48 H 1.08995 * 109.39173 * 166.77422 * 28 22 21 49 49 H 1.08995 * 109.30442 * 47.02957 * 28 22 21 50 50 H 1.09005 * 109.58390 * 173.14197 * 29 18 17 51 51 H 1.08995 * 109.58895 * 293.56593 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6904 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6114 -0.6617 3.5093 8 7 2.9236 -1.9390 3.4505 9 14 2.7904 0.2704 5.1182 10 1 2.3775 1.6831 4.9204 11 1 1.9292 -0.3573 6.1524 12 1 4.2073 0.2266 5.5607 13 6 2.0400 -0.7212 -1.2491 14 1 1.6778 -1.7493 -1.2490 15 6 1.5301 -0.0004 -2.4992 16 6 2.0119 -0.7405 -3.7491 17 6 3.5435 -0.7382 -3.7805 18 7 4.0433 -1.2983 -2.5174 19 6 4.9169 -2.3245 -2.5193 20 8 5.3217 -2.7783 -1.4700 21 6 5.3910 -2.9080 -3.8254 22 7 6.4390 -3.9039 -3.5651 23 6 6.7713 -4.6501 -4.7862 24 6 7.1344 -3.6555 -5.8905 25 7 8.1267 -2.7045 -5.3980 26 6 8.3583 -2.5046 -4.0963 27 8 9.1791 -1.6722 -3.7734 28 6 7.6447 -3.2684 -3.0169 29 6 3.5676 -0.7225 -1.2522 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6316 1.1528 34 1 3.2469 -2.3962 4.2425 35 1 1.9129 1.0202 -2.5113 36 1 0.4405 0.0206 -2.4870 37 1 1.6290 -0.2399 -4.6385 38 1 1.6500 -1.7684 -3.7259 39 1 3.9051 0.2836 -3.8955 40 1 3.8949 -1.3462 -4.6141 41 1 5.7930 -2.1133 -4.4539 42 1 4.5542 -3.3859 -4.3349 43 1 5.9098 -5.2416 -5.0959 44 1 7.6188 -5.3077 -4.5934 45 1 6.2391 -3.1163 -6.2002 46 1 7.5441 -4.1963 -6.7438 47 1 8.6405 -2.1948 -6.0437 48 1 8.3081 -4.0353 -2.6173 49 1 7.3597 -2.5843 -2.2176 50 1 3.9328 -1.3215 -0.4179 51 1 3.9312 0.3006 -1.1568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319818783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:49 Heat of formation + Delta-G solvation = -42.384320 kcal Electronic energy + Delta-G solvation = -31092.017857 eV Core-core repulsion = 27026.821906 eV Total energy + Delta-G solvation = -4065.195951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17898 -39.89181 -38.05586 -37.21600 -35.43244 -34.44280 -32.95766 -31.74614 -30.32604 -30.17242 -29.03125 -27.96296 -25.64528 -25.07053 -23.86971 -23.20001 -22.76659 -21.19511 -19.92225 -19.49376 -18.63383 -17.72729 -17.50127 -17.03197 -16.65039 -16.17448 -15.69206 -15.43906 -15.03734 -14.85375 -14.71410 -14.45572 -14.29053 -13.92096 -13.71325 -13.57005 -13.26603 -13.13952 -12.92976 -12.81461 -12.65575 -12.32856 -12.03396 -11.95700 -11.90013 -11.71930 -11.32680 -11.10174 -10.98474 -10.82418 -10.70044 -10.68509 -10.57952 -10.22647 -10.10180 -9.81229 -9.57339 -9.54385 -9.48156 -8.84958 -8.63166 -8.41275 -6.87287 -5.66803 -2.96173 2.30045 2.72289 2.75955 2.98052 3.49472 3.54460 3.55802 3.57240 4.12271 4.35969 4.41806 4.44602 4.62544 4.69198 4.76297 4.84969 4.88931 4.97693 5.02426 5.07029 5.20684 5.25959 5.32462 5.36003 5.40797 5.57803 5.64431 5.70731 5.78652 5.82283 5.93351 6.02735 6.12385 6.20875 6.21812 6.24596 6.39290 6.46573 6.49734 6.52721 6.55312 6.76158 6.78495 6.87756 6.95328 7.13597 7.56328 7.78366 7.84373 8.36036 8.50614 9.61895 10.19590 10.53886 11.55351 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003094 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.123280 B = 9048.407360 C =10469.190685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.612 5.612 19 C 0.508 3.492 20 O -0.508 6.508 21 C 0.030 3.970 22 N -0.505 5.505 23 C 0.036 3.964 24 C 0.071 3.929 25 N -0.727 5.727 26 C 0.486 3.514 27 O -0.546 6.546 28 C 0.037 3.963 29 C 0.123 3.877 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.398 0.602 48 H 0.118 0.882 49 H 0.127 0.873 50 H 0.108 0.892 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -3.287 -26.617 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.123 4.123 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.016 4.016 18 N -0.347 5.347 19 C 0.294 3.706 20 O -0.382 6.382 21 C -0.101 4.101 22 N -0.228 5.228 23 C -0.093 4.093 24 C -0.056 4.056 25 N -0.382 5.382 26 C 0.272 3.728 27 O -0.422 6.422 28 C -0.094 4.094 29 C 0.002 3.998 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.234 0.766 48 H 0.136 0.864 49 H 0.145 0.855 50 H 0.126 0.874 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.409 -3.447 -25.170 25.632 hybrid contribution 0.472 0.903 -0.181 1.035 sum 3.881 -2.544 -25.350 25.771 Atomic orbital electron populations 1.22482 0.99357 1.00773 0.99839 1.20164 0.91796 0.95238 0.85822 0.93589 1.42456 1.78060 1.10764 1.05275 1.19224 1.36680 0.93762 0.87324 0.91291 1.24733 1.02200 0.95927 0.97960 1.69676 1.50652 1.08566 1.28679 0.86182 0.77307 0.78748 0.84324 1.20666 1.22005 1.21909 1.21676 0.94802 1.00477 0.95298 0.91207 1.21628 1.01075 0.99055 0.93550 1.21914 0.94727 1.01616 0.98876 1.21711 0.94929 0.99151 0.85850 1.48199 1.44603 1.34057 1.07822 1.20293 0.79609 0.79751 0.90968 1.90786 1.55508 1.59010 1.32870 1.22172 0.96574 0.95247 0.96132 1.62105 1.07653 1.25521 1.27498 1.22629 1.03368 0.95798 0.87456 1.22171 0.92415 0.92094 0.98875 1.45672 1.41466 1.43542 1.07474 1.21520 0.83287 0.83494 0.84532 1.90780 1.35332 1.34432 1.81681 1.22630 0.90971 0.99785 0.95969 1.21609 0.93824 0.98987 0.85398 0.92903 0.94337 0.93619 0.78163 0.93585 0.91899 0.91174 0.91058 0.91518 0.91467 0.90709 0.91914 0.87288 0.87946 0.88963 0.91323 0.89747 0.76639 0.86422 0.85507 0.87382 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.14 37.16 0.34 -2.56 16 2 C 0.18 3.48 2.48 -67.94 -0.17 3.31 16 3 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 4 N -0.72 -18.11 4.52 -53.43 -0.24 -18.35 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 9 Si 0.90 22.95 29.55 -169.99 -5.02 17.92 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 C -0.10 -1.63 1.96 -90.73 -0.18 -1.81 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.12 -1.35 4.85 -26.69 -0.13 -1.48 16 16 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 17 C 0.11 1.01 6.30 -3.71 -0.02 0.98 16 18 N -0.61 -8.44 2.98 -173.03 -0.52 -8.95 16 19 C 0.51 7.53 7.14 -10.99 -0.08 7.46 16 20 O -0.51 -10.05 14.21 5.56 0.08 -9.97 16 21 C 0.03 0.29 2.90 -4.98 -0.01 0.28 16 22 N -0.50 -5.11 4.72 -237.79 -1.12 -6.24 16 23 C 0.04 0.21 6.01 -3.82 -0.02 0.18 16 24 C 0.07 0.31 6.47 -4.32 -0.03 0.28 16 25 N -0.73 -5.59 5.33 -61.06 -0.33 -5.92 16 26 C 0.49 5.78 7.07 -11.67 -0.08 5.70 16 27 O -0.55 -8.96 17.82 5.56 0.10 -8.86 16 28 C 0.04 0.44 5.51 -5.19 -0.03 0.42 16 29 C 0.12 2.12 5.45 -3.93 -0.02 2.09 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.38 10.47 7.61 -40.82 -0.31 10.16 16 34 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.50 5.95 -51.93 -0.31 0.19 16 41 H 0.06 0.54 5.69 -51.93 -0.30 0.25 16 42 H 0.11 0.79 7.91 -51.93 -0.41 0.38 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 45 H 0.07 0.24 7.08 -51.93 -0.37 -0.13 16 46 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.40 2.69 8.84 -40.82 -0.36 2.32 16 48 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.13 1.95 6.02 -51.93 -0.31 1.63 16 50 H 0.11 2.37 6.50 -51.93 -0.34 2.03 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -36.63 390.50 -9.69 -46.31 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.40 Total: 10.03 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.84 Total: 6.23 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.48 Total: -67.55 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.63 -9.69 -46.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319818783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.929 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds