Wall clock time and date at job start Tue Mar 31 2020 22:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47155 * 2 1 4 4 N 1.46496 * 109.47333 * 119.99242 * 2 1 3 5 5 C 1.36938 * 120.00490 * 275.00623 * 4 2 1 6 6 H 1.07992 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99859 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00229 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99755 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47285 * 119.99456 * 9 7 5 12 12 H 1.48502 * 109.47110 * 239.99965 * 9 7 5 13 13 C 1.52990 * 109.47162 * 239.99832 * 2 1 3 14 14 H 1.08999 * 109.49825 * 299.93560 * 13 2 1 15 15 C 1.53041 * 109.50004 * 59.99705 * 13 2 1 16 16 C 1.53044 * 109.53986 * 181.34791 * 15 13 2 17 17 C 1.53189 * 109.31301 * 298.63704 * 16 15 13 18 18 N 1.46933 * 108.77770 * 54.63619 * 17 16 15 19 19 C 1.34768 * 120.63355 * 126.36374 * 18 17 16 20 20 O 1.21277 * 120.00331 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99995 * 0.02562 * 19 18 17 22 22 N 1.46897 * 109.47265 * 173.82870 * 21 19 18 23 23 C 1.46913 * 111.00079 * 170.74389 * 22 21 19 24 24 C 1.52986 * 108.87345 * 54.32155 * 23 22 21 25 25 N 1.46004 * 109.95329 * 50.31750 * 24 23 22 26 26 C 1.33718 * 122.92329 * 341.87375 * 25 24 23 27 27 O 1.21282 * 118.62547 * 181.70585 * 26 25 24 28 28 C 1.46900 * 111.00312 * 293.59285 * 22 21 19 29 29 C 1.46926 * 118.73260 * 306.64307 * 18 17 16 30 30 H 1.09001 * 109.47164 * 300.00570 * 1 2 3 31 31 H 1.09000 * 109.47217 * 60.00303 * 1 2 3 32 32 H 1.08996 * 109.47519 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99982 * 94.99665 * 4 2 1 34 34 H 0.96998 * 119.99927 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.45734 * 61.32897 * 15 13 2 36 36 H 1.08995 * 109.44976 * 301.36613 * 15 13 2 37 37 H 1.09000 * 109.49443 * 178.68379 * 16 15 13 38 38 H 1.08998 * 109.51977 * 58.60562 * 16 15 13 39 39 H 1.08996 * 109.59003 * 294.84682 * 17 16 15 40 40 H 1.09002 * 109.70382 * 174.48675 * 17 16 15 41 41 H 1.09002 * 109.46996 * 53.82757 * 21 19 18 42 42 H 1.08999 * 109.47496 * 293.83076 * 21 19 18 43 43 H 1.08992 * 109.45435 * 294.54389 * 23 22 21 44 44 H 1.08993 * 109.58971 * 174.18114 * 23 22 21 45 45 H 1.09006 * 109.37460 * 290.19763 * 24 23 22 46 46 H 1.09007 * 109.37269 * 170.43590 * 24 23 22 47 47 H 0.96991 * 118.54104 * 161.89214 * 25 24 23 48 48 H 1.08995 * 109.39173 * 166.77422 * 28 22 21 49 49 H 1.08995 * 109.30442 * 47.02957 * 28 22 21 50 50 H 1.09005 * 109.58390 * 173.14197 * 29 18 17 51 51 H 1.08995 * 109.58895 * 293.56593 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6904 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6114 -0.6617 3.5093 8 7 2.9236 -1.9390 3.4505 9 14 2.7904 0.2704 5.1182 10 1 2.3775 1.6831 4.9204 11 1 1.9292 -0.3573 6.1524 12 1 4.2073 0.2266 5.5607 13 6 2.0400 -0.7212 -1.2491 14 1 1.6778 -1.7493 -1.2490 15 6 1.5301 -0.0004 -2.4992 16 6 2.0119 -0.7405 -3.7491 17 6 3.5435 -0.7382 -3.7805 18 7 4.0433 -1.2983 -2.5174 19 6 4.9169 -2.3245 -2.5193 20 8 5.3217 -2.7783 -1.4700 21 6 5.3910 -2.9080 -3.8254 22 7 6.4390 -3.9039 -3.5651 23 6 6.7713 -4.6501 -4.7862 24 6 7.1344 -3.6555 -5.8905 25 7 8.1267 -2.7045 -5.3980 26 6 8.3583 -2.5046 -4.0963 27 8 9.1791 -1.6722 -3.7734 28 6 7.6447 -3.2684 -3.0169 29 6 3.5676 -0.7225 -1.2522 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6316 1.1528 34 1 3.2469 -2.3962 4.2425 35 1 1.9129 1.0202 -2.5113 36 1 0.4405 0.0206 -2.4870 37 1 1.6290 -0.2399 -4.6385 38 1 1.6500 -1.7684 -3.7259 39 1 3.9051 0.2836 -3.8955 40 1 3.8949 -1.3462 -4.6141 41 1 5.7930 -2.1133 -4.4539 42 1 4.5542 -3.3859 -4.3349 43 1 5.9098 -5.2416 -5.0959 44 1 7.6188 -5.3077 -4.5934 45 1 6.2391 -3.1163 -6.2002 46 1 7.5441 -4.1963 -6.7438 47 1 8.6405 -2.1948 -6.0437 48 1 8.3081 -4.0353 -2.6173 49 1 7.3597 -2.5843 -2.2176 50 1 3.9328 -1.3215 -0.4179 51 1 3.9312 0.3006 -1.1568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319818783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:48 Heat of formation + Delta-G solvation = -73.183186 kcal Electronic energy + Delta-G solvation = -31093.353396 eV Core-core repulsion = 27026.821906 eV Total energy + Delta-G solvation = -4066.531490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.03671 -40.97042 -39.21962 -38.21939 -36.93702 -35.18560 -34.64879 -33.10417 -31.67212 -30.88443 -30.41535 -29.27332 -26.63312 -26.21024 -25.37012 -24.33427 -23.70354 -22.35042 -21.14765 -20.62172 -19.55997 -19.14884 -18.53309 -18.33180 -17.55491 -17.08903 -16.79236 -16.64070 -16.30231 -15.91357 -15.70706 -15.60052 -15.46130 -15.27991 -15.06176 -14.64950 -14.36410 -14.12933 -14.06022 -13.96289 -13.74433 -13.51450 -13.38493 -13.01721 -12.82481 -12.80404 -12.73559 -12.52981 -12.37508 -12.27761 -12.10538 -11.96521 -11.80866 -11.67037 -11.65355 -11.34637 -11.16872 -10.96971 -10.71648 -10.19940 -9.58699 -9.36557 -8.98161 -7.91809 -5.20082 1.38333 1.43736 1.45792 1.55054 1.64647 1.89744 2.13649 2.56009 2.77988 3.41630 3.46221 3.48900 3.75093 3.83127 3.88175 3.96630 3.99251 4.11187 4.15388 4.18360 4.25879 4.32708 4.36792 4.45674 4.50393 4.61520 4.64841 4.67773 4.75538 4.80153 4.88476 4.94919 4.96968 4.97633 5.05549 5.08075 5.19799 5.29857 5.39962 5.49725 5.51144 5.56987 5.58214 5.66146 5.77240 5.87298 6.12891 6.29533 6.50358 7.03194 7.25750 7.34640 8.13290 8.34403 9.31840 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003094 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.123280 B = 9048.407360 C =10469.190685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.043 0.957 4 N -0.737 5.737 5 C -0.231 4.231 6 H 0.076 0.924 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.293 1.293 12 H -0.299 1.299 13 C -0.087 4.087 14 H 0.052 0.948 15 C -0.111 4.111 16 C -0.125 4.125 17 C 0.098 3.902 18 N -0.611 5.611 19 C 0.493 3.507 20 O -0.574 6.574 21 C 0.043 3.957 22 N -0.524 5.524 23 C 0.033 3.967 24 C 0.068 3.932 25 N -0.710 5.710 26 C 0.489 3.511 27 O -0.604 6.604 28 C 0.043 3.957 29 C 0.131 3.869 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.368 0.632 34 H 0.247 0.753 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.120 0.880 47 H 0.406 0.594 48 H 0.118 0.882 49 H 0.083 0.917 50 H 0.047 0.953 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -2.689 -31.501 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.063 3.937 3 H 0.061 0.939 4 N -0.377 5.377 5 C -0.363 4.363 6 H 0.094 0.906 7 C -0.273 4.273 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.227 1.227 13 C -0.107 4.107 14 H 0.071 0.929 15 C -0.149 4.149 16 C -0.163 4.163 17 C -0.023 4.023 18 N -0.345 5.345 19 C 0.282 3.718 20 O -0.452 6.452 21 C -0.087 4.087 22 N -0.247 5.247 23 C -0.094 4.094 24 C -0.056 4.056 25 N -0.362 5.362 26 C 0.274 3.726 27 O -0.485 6.485 28 C -0.089 4.089 29 C 0.008 3.992 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.199 0.801 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.167 0.833 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.138 0.862 47 H 0.243 0.757 48 H 0.136 0.864 49 H 0.101 0.899 50 H 0.066 0.934 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.657 -2.814 -30.188 30.364 hybrid contribution 0.961 0.710 1.228 1.713 sum 2.618 -2.104 -28.960 29.154 Atomic orbital electron populations 1.22311 0.97278 1.00647 1.00986 1.20489 0.93096 0.94841 0.85299 0.93915 1.42693 1.78376 1.10159 1.06498 1.19632 1.34380 0.94042 0.88291 0.90588 1.25557 1.03338 0.96839 1.01536 1.69858 1.52872 1.10358 1.29099 0.85132 0.76542 0.78362 0.80134 1.18704 1.22069 1.22669 1.21497 0.93517 0.99677 0.96052 0.92907 1.21630 1.01760 0.99149 0.92313 1.21910 0.94076 1.01669 0.98670 1.22136 0.95453 1.00287 0.84397 1.48313 1.44230 1.33736 1.08174 1.21409 0.78768 0.79336 0.92285 1.90762 1.57659 1.61119 1.35685 1.22189 0.97675 0.95927 0.92929 1.62075 1.06716 1.25565 1.30376 1.22843 1.04820 0.95820 0.85918 1.22496 0.92628 0.91507 0.99013 1.45623 1.41342 1.43312 1.05898 1.21414 0.82542 0.82711 0.85912 1.90749 1.37885 1.36971 1.82852 1.22346 0.92089 0.99028 0.95392 1.21171 0.94849 0.97309 0.85896 0.94864 0.89991 0.94354 0.80079 0.94376 0.91139 0.89872 0.87058 0.91530 0.90503 0.86797 0.90023 0.83348 0.85037 0.88870 0.88813 0.86211 0.75725 0.86438 0.89870 0.93403 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.14 71.98 0.66 -4.58 16 2 C 0.17 6.71 2.48 44.99 0.11 6.83 16 3 H 0.04 1.70 8.08 -2.38 -0.02 1.68 16 4 N -0.74 -38.80 4.52 -322.96 -1.46 -40.26 16 5 C -0.23 -13.38 9.93 84.03 0.83 -12.54 16 6 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 7 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 8 N -0.97 -63.66 13.06 21.65 0.28 -63.38 16 9 Si 0.97 48.84 29.55 68.60 2.03 50.87 16 10 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 13 C -0.09 -2.79 1.96 -10.86 -0.02 -2.81 16 14 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 15 C -0.11 -2.25 4.85 30.62 0.15 -2.10 16 16 C -0.13 -1.69 6.08 30.67 0.19 -1.50 16 17 C 0.10 1.47 6.30 86.36 0.54 2.02 16 18 N -0.61 -16.72 2.98 -819.74 -2.44 -19.16 16 19 C 0.49 14.98 7.14 87.66 0.63 15.61 16 20 O -0.57 -24.86 14.21 -3.02 -0.04 -24.90 16 21 C 0.04 0.74 2.90 85.56 0.25 0.99 16 22 N -0.52 -9.98 4.72 -906.24 -4.28 -14.26 16 23 C 0.03 0.26 6.01 86.30 0.52 0.78 16 24 C 0.07 0.26 6.47 86.47 0.56 0.82 16 25 N -0.71 -9.00 5.33 -466.07 -2.48 -11.48 16 26 C 0.49 11.62 7.07 87.68 0.62 12.24 16 27 O -0.60 -20.70 17.82 -3.04 -0.05 -20.75 16 28 C 0.04 1.08 5.51 85.42 0.47 1.55 16 29 C 0.13 4.77 5.45 86.22 0.47 5.24 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 2.09 6.40 -2.39 -0.02 2.08 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.37 21.56 7.61 -92.71 -0.71 20.85 16 34 H 0.25 15.81 8.31 -92.71 -0.77 15.03 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 1.51 6.36 -2.39 -0.02 1.50 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 0.85 5.95 -2.39 -0.01 0.84 16 41 H 0.08 1.10 5.69 -2.39 -0.01 1.09 16 42 H 0.15 1.38 7.91 -2.39 -0.02 1.36 16 43 H 0.13 0.35 8.14 -2.39 -0.02 0.34 16 44 H 0.09 0.75 8.07 -2.39 -0.02 0.74 16 45 H 0.09 0.03 7.08 -2.38 -0.02 0.01 16 46 H 0.12 -0.21 8.14 -2.38 -0.02 -0.23 16 47 H 0.41 4.34 8.84 -92.72 -0.82 3.52 16 48 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 49 H 0.08 2.87 6.02 -2.39 -0.01 2.86 16 50 H 0.05 2.33 6.50 -2.38 -0.02 2.31 16 51 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -91.39 390.50 -2.58 -93.97 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.57 Total: 31.26 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 6.44 Total: 18.09 kcal Atomic # 7 Polarization: -138.16 SS G_CDS: -10.38 Total: -148.54 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.10 Total: -45.65 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -91.39 -2.58 -93.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319818783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.788 kcal (2) G-P(sol) polarization free energy of solvation -91.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds