Wall clock time and date at job start Tue Mar 31 2020 22:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99935 * 2 1 3 5 5 C 1.53001 * 109.46729 * 174.99919 * 4 2 1 6 6 N 1.46909 * 109.46672 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99721 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46827 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00225 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99752 * 179.97438 * 8 7 6 11 11 C 1.37102 * 119.99960 * 179.97438 * 10 8 7 12 12 H 1.07994 * 119.99776 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99792 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00291 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99583 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47046 * 89.99859 * 15 13 11 17 17 H 1.48506 * 109.46766 * 209.99318 * 15 13 11 18 18 H 1.48494 * 109.47421 * 329.99756 * 15 13 11 19 19 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 20 20 C 1.34767 * 120.00003 * 274.99925 * 19 2 1 21 21 O 1.21281 * 120.00199 * 0.02562 * 20 19 2 22 22 C 1.50706 * 119.99889 * 179.97438 * 20 19 2 23 23 C 1.56241 * 116.69077 * 297.57775 * 22 20 19 24 24 C 1.55913 * 102.63442 * 199.96948 * 23 22 20 25 25 N 1.49520 * 105.39407 * 0.46707 * 24 23 22 26 26 C 1.49513 * 105.92653 * 287.97245 * 25 24 23 27 27 C 1.54662 * 105.28550 * 71.26174 * 26 25 24 28 28 C 1.50468 * 102.03111 * 34.38447 * 25 24 23 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99774 * 4 2 1 33 33 H 1.09000 * 109.46875 * 55.00176 * 4 2 1 34 34 H 1.09002 * 109.47620 * 299.99731 * 5 4 2 35 35 H 1.09000 * 109.47757 * 60.00487 * 5 4 2 36 36 H 1.00900 * 110.99854 * 56.04803 * 6 5 4 37 37 H 1.09006 * 109.46829 * 299.99872 * 7 6 5 38 38 H 1.08998 * 109.47343 * 59.99691 * 7 6 5 39 39 H 0.97000 * 120.00427 * 0.02562 * 10 8 7 40 40 H 0.97004 * 120.00284 * 180.02562 * 14 13 11 41 41 H 0.96996 * 119.99678 * 95.00711 * 19 2 1 42 42 H 1.08998 * 110.66907 * 319.46952 * 23 22 20 43 43 H 1.08996 * 110.66969 * 82.61219 * 23 22 20 44 44 H 1.09002 * 110.87109 * 241.14350 * 24 23 22 45 45 H 1.09000 * 109.58212 * 119.12863 * 24 23 22 46 46 H 1.08999 * 110.28462 * 190.20847 * 26 25 24 47 47 H 1.08999 * 110.28492 * 312.30857 * 26 25 24 48 48 H 1.09007 * 110.66770 * 242.22950 * 27 26 25 49 49 H 1.08994 * 110.67120 * 119.09184 * 27 26 25 50 50 H 1.08999 * 111.90519 * 188.39876 * 28 25 24 51 51 H 1.09001 * 111.96871 * 62.21199 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 7 4.0545 -1.3052 -2.5134 7 6 5.5181 -1.2226 -2.6083 8 6 5.9824 -1.9414 -3.8488 9 8 5.1737 -2.4708 -4.5815 10 7 7.2963 -1.9960 -4.1440 11 6 7.7188 -2.6503 -5.2723 12 1 6.9987 -3.1217 -5.9246 13 6 9.0734 -2.7070 -5.5764 14 7 9.9495 -2.1330 -4.7828 15 14 9.6489 -3.5980 -7.1141 16 1 9.6869 -2.6458 -8.2529 17 1 11.0080 -4.1514 -6.8860 18 1 8.7095 -4.7050 -7.4256 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0182 2.3571 21 8 1.8582 1.1584 2.4117 22 6 2.6489 -0.7288 3.5878 23 6 1.7732 -1.9062 4.1244 24 6 2.2541 -2.0434 5.6012 25 7 3.2960 -0.9858 5.7791 26 6 4.4902 -1.4528 5.0102 27 6 4.0980 -1.3092 3.5211 28 6 2.7724 0.1207 4.9041 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2617 -2.1369 34 1 3.8533 0.4371 -1.3573 35 1 3.9996 -1.0727 -0.4259 36 1 3.6166 -0.9396 -3.3457 37 1 5.8204 -0.1766 -2.6602 38 1 5.9660 -1.6870 -1.7297 39 1 7.9431 -1.5729 -3.5579 40 1 10.8952 -2.1723 -4.9953 41 1 2.2491 -1.6317 1.1527 42 1 0.7139 -1.6564 4.0641 43 1 1.9850 -2.8242 3.5762 44 1 2.6825 -3.0296 5.7801 45 1 1.4167 -1.8663 6.2761 46 1 5.3533 -0.8265 5.2356 47 1 4.7070 -2.4949 5.2451 48 1 4.1008 -2.2809 3.0271 49 1 4.7672 -0.6157 3.0121 50 1 3.4932 0.9315 4.7988 51 1 1.8037 0.4862 5.2447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320606391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:23 Heat of formation + Delta-G solvation = -57.570805 kcal Electronic energy + Delta-G solvation = -29377.131377 eV Core-core repulsion = 25311.276891 eV Total energy + Delta-G solvation = -4065.854486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51155 -39.49078 -38.33279 -36.91975 -35.03137 -33.85402 -32.34275 -31.25715 -31.09986 -30.53527 -29.24772 -28.46219 -26.27479 -24.27664 -23.43251 -22.98118 -22.14977 -21.15422 -20.99260 -19.73680 -19.22854 -17.91406 -17.31723 -16.74609 -16.50298 -16.16421 -15.76764 -15.57029 -15.23988 -14.87236 -14.53426 -14.39430 -13.96829 -13.77191 -13.68393 -13.67451 -13.26915 -13.23132 -13.02876 -12.78830 -12.63818 -12.31809 -12.29145 -12.13320 -11.87803 -11.72121 -11.66783 -11.53219 -11.33687 -11.28354 -11.10700 -11.05918 -10.96011 -10.74424 -10.41257 -10.24023 -10.05477 -9.53337 -9.48758 -9.37035 -8.50087 -8.10437 -7.98541 -6.43940 -3.84931 2.26713 2.81209 3.16075 3.24877 3.30782 3.38442 3.87909 3.96975 4.01480 4.03823 4.22503 4.34588 4.52632 4.54907 4.65410 4.75424 4.78980 4.81201 4.90231 5.04277 5.08722 5.10561 5.18170 5.21382 5.27493 5.28385 5.31331 5.37964 5.41978 5.46895 5.51664 5.53838 5.55655 5.62604 5.65576 5.76191 5.86941 5.89772 5.95333 6.03041 6.04212 6.19942 6.23528 6.25770 7.16325 7.20724 7.53016 7.61307 7.92621 8.03919 8.58715 9.15476 9.51776 10.03052 10.73778 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002015 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.734326 B =13895.620664 C =15264.927838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 N -0.718 5.718 20 C 0.553 3.447 21 O -0.535 6.535 22 C -0.134 4.134 23 C -0.134 4.134 24 C 0.012 3.988 25 N -0.466 5.466 26 C 0.013 3.987 27 C -0.136 4.136 28 C 0.040 3.960 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.349 0.651 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.402 0.598 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 2.881 20.371 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.369 5.369 20 C 0.338 3.662 21 O -0.412 6.412 22 C -0.139 4.139 23 C -0.173 4.173 24 C -0.117 4.117 25 N -0.186 5.186 26 C -0.116 4.116 27 C -0.175 4.175 28 C -0.089 4.089 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.236 0.764 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.715 2.915 20.932 26.336 hybrid contribution 0.936 0.008 -1.626 1.876 sum -14.779 2.923 19.306 24.489 Atomic orbital electron populations 1.22154 0.95006 1.02261 1.02574 1.21006 0.94072 0.97544 0.83598 0.89354 1.21877 0.95671 1.01984 0.96834 1.21955 0.94475 0.96164 0.94420 1.60086 1.04972 1.59895 1.05243 1.21662 0.88885 0.98763 0.98864 1.19806 0.83416 0.86157 0.88050 1.90520 1.53395 1.50525 1.52362 1.41872 1.05435 1.48919 1.23790 1.19704 0.91983 1.30304 1.00932 0.87911 1.25271 0.95623 0.97817 0.99259 1.69611 1.02549 1.44291 1.37855 0.85852 0.77917 0.79524 0.80967 1.20406 1.20900 1.19389 1.46114 1.67076 1.14206 1.09521 1.19419 0.76997 0.86543 0.83281 1.90715 1.49833 1.15732 1.84889 1.23812 0.97491 0.97439 0.95127 1.23418 0.99744 0.96919 0.97229 1.23837 0.96248 0.96607 0.94962 1.69991 1.03605 1.05159 1.39821 1.23620 0.95413 1.01828 0.90772 1.23224 0.93838 1.01745 0.98675 1.24341 1.01826 0.94910 0.87806 0.92316 0.92209 0.91408 0.90200 0.90122 0.95546 0.91271 0.83164 0.93928 0.89736 0.77462 0.91846 0.76384 0.90538 0.90446 0.90021 0.89772 0.89491 0.90082 0.90236 0.90436 0.88965 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.25 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -1.15 5.01 -26.73 -0.13 -1.28 16 5 C 0.06 0.68 5.57 -3.82 -0.02 0.66 16 6 N -0.67 -10.37 6.13 -115.05 -0.70 -11.08 16 7 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 8 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 9 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 10 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 11 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 15 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 N -0.72 -5.85 4.53 -53.80 -0.24 -6.09 16 20 C 0.55 5.45 7.25 -10.99 -0.08 5.37 16 21 O -0.54 -7.24 16.23 5.56 0.09 -7.15 16 22 C -0.13 -1.03 1.37 -149.92 -0.20 -1.23 16 23 C -0.13 -0.80 6.14 -23.44 -0.14 -0.95 16 24 C 0.01 0.08 6.64 -0.81 -0.01 0.07 16 25 N -0.47 -3.66 6.94 -221.24 -1.54 -5.20 16 26 C 0.01 0.09 6.61 -1.49 -0.01 0.08 16 27 C -0.14 -0.93 6.05 -24.11 -0.15 -1.08 16 28 C 0.04 0.34 6.05 0.43 0.00 0.34 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.40 2.66 8.60 -40.82 -0.35 2.31 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.39 7.86 -51.93 -0.41 -0.02 16 44 H 0.08 0.43 7.69 -51.93 -0.40 0.03 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.48 7.69 -51.93 -0.40 0.08 16 48 H 0.08 0.47 7.86 -51.92 -0.41 0.07 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -32.78 411.55 -10.23 -43.01 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -8.85 Total: 12.87 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.92 Total: 5.23 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -1.82 Total: -60.42 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.78 -10.23 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320606391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.563 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds