Wall clock time and date at job start Tue Mar 31 2020 22:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99935 * 2 1 3 5 5 C 1.53001 * 109.46729 * 174.99919 * 4 2 1 6 6 N 1.46909 * 109.46672 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99721 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46827 * 180.02562 * 7 6 5 9 9 O 1.21293 * 120.00225 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99752 * 179.97438 * 8 7 6 11 11 C 1.37102 * 119.99960 * 179.97438 * 10 8 7 12 12 H 1.07994 * 119.99776 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99792 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00291 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99583 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47046 * 89.99859 * 15 13 11 17 17 H 1.48506 * 109.46766 * 209.99318 * 15 13 11 18 18 H 1.48494 * 109.47421 * 329.99756 * 15 13 11 19 19 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 20 20 C 1.34767 * 120.00003 * 274.99925 * 19 2 1 21 21 O 1.21281 * 120.00199 * 0.02562 * 20 19 2 22 22 C 1.50706 * 119.99889 * 179.97438 * 20 19 2 23 23 C 1.56241 * 116.69077 * 297.57775 * 22 20 19 24 24 C 1.55913 * 102.63442 * 199.96948 * 23 22 20 25 25 N 1.49520 * 105.39407 * 0.46707 * 24 23 22 26 26 C 1.49513 * 105.92653 * 287.97245 * 25 24 23 27 27 C 1.54662 * 105.28550 * 71.26174 * 26 25 24 28 28 C 1.50468 * 102.03111 * 34.38447 * 25 24 23 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99774 * 4 2 1 33 33 H 1.09000 * 109.46875 * 55.00176 * 4 2 1 34 34 H 1.09002 * 109.47620 * 299.99731 * 5 4 2 35 35 H 1.09000 * 109.47757 * 60.00487 * 5 4 2 36 36 H 1.00900 * 110.99854 * 56.04803 * 6 5 4 37 37 H 1.09006 * 109.46829 * 299.99872 * 7 6 5 38 38 H 1.08998 * 109.47343 * 59.99691 * 7 6 5 39 39 H 0.97000 * 120.00427 * 0.02562 * 10 8 7 40 40 H 0.97004 * 120.00284 * 180.02562 * 14 13 11 41 41 H 0.96996 * 119.99678 * 95.00711 * 19 2 1 42 42 H 1.08998 * 110.66907 * 319.46952 * 23 22 20 43 43 H 1.08996 * 110.66969 * 82.61219 * 23 22 20 44 44 H 1.09002 * 110.87109 * 241.14350 * 24 23 22 45 45 H 1.09000 * 109.58212 * 119.12863 * 24 23 22 46 46 H 1.08999 * 110.28462 * 190.20847 * 26 25 24 47 47 H 1.08999 * 110.28492 * 312.30857 * 26 25 24 48 48 H 1.09007 * 110.66770 * 242.22950 * 27 26 25 49 49 H 1.08994 * 110.67120 * 119.09184 * 27 26 25 50 50 H 1.08999 * 111.90519 * 188.39876 * 28 25 24 51 51 H 1.09001 * 111.96871 * 62.21199 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 7 4.0545 -1.3052 -2.5134 7 6 5.5181 -1.2226 -2.6083 8 6 5.9824 -1.9414 -3.8488 9 8 5.1737 -2.4708 -4.5815 10 7 7.2963 -1.9960 -4.1440 11 6 7.7188 -2.6503 -5.2723 12 1 6.9987 -3.1217 -5.9246 13 6 9.0734 -2.7070 -5.5764 14 7 9.9495 -2.1330 -4.7828 15 14 9.6489 -3.5980 -7.1141 16 1 9.6869 -2.6458 -8.2529 17 1 11.0080 -4.1514 -6.8860 18 1 8.7095 -4.7050 -7.4256 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0182 2.3571 21 8 1.8582 1.1584 2.4117 22 6 2.6489 -0.7288 3.5878 23 6 1.7732 -1.9062 4.1244 24 6 2.2541 -2.0434 5.6012 25 7 3.2960 -0.9858 5.7791 26 6 4.4902 -1.4528 5.0102 27 6 4.0980 -1.3092 3.5211 28 6 2.7724 0.1207 4.9041 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2617 -2.1369 34 1 3.8533 0.4371 -1.3573 35 1 3.9996 -1.0727 -0.4259 36 1 3.6166 -0.9396 -3.3457 37 1 5.8204 -0.1766 -2.6602 38 1 5.9660 -1.6870 -1.7297 39 1 7.9431 -1.5729 -3.5579 40 1 10.8952 -2.1723 -4.9953 41 1 2.2491 -1.6317 1.1527 42 1 0.7139 -1.6564 4.0641 43 1 1.9850 -2.8242 3.5762 44 1 2.6825 -3.0296 5.7801 45 1 1.4167 -1.8663 6.2761 46 1 5.3533 -0.8265 5.2356 47 1 4.7070 -2.4949 5.2451 48 1 4.1008 -2.2809 3.0271 49 1 4.7672 -0.6157 3.0121 50 1 3.4932 0.9315 4.7988 51 1 1.8037 0.4862 5.2447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320606391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:22 Heat of formation + Delta-G solvation = -84.538106 kcal Electronic energy + Delta-G solvation = -29378.300767 eV Core-core repulsion = 25311.276891 eV Total energy + Delta-G solvation = -4067.023876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12966 -40.30087 -40.08576 -37.90827 -36.29734 -35.70267 -33.32041 -33.08104 -31.60147 -31.26952 -30.20559 -29.04674 -27.79998 -25.84138 -24.30462 -23.48407 -23.10808 -21.78447 -21.73352 -21.07746 -20.36267 -19.90357 -17.99648 -17.83353 -17.50784 -17.10430 -16.97461 -16.47641 -16.27635 -16.10276 -15.82269 -15.59564 -15.39994 -15.06264 -14.77742 -14.46086 -14.23328 -13.86705 -13.78287 -13.76913 -13.61269 -13.49804 -13.23282 -13.14555 -12.94813 -12.81795 -12.70971 -12.43109 -12.42669 -12.28951 -12.23019 -12.13717 -12.11465 -11.79105 -11.63555 -11.51374 -11.26934 -10.85220 -10.36857 -10.12836 -10.04732 -10.02767 -9.36430 -8.47474 -5.96417 1.37793 1.41878 1.51213 1.54665 2.03783 2.11316 2.28531 2.80970 2.87260 3.19737 3.41860 3.46472 3.47769 3.73453 3.89579 3.95311 4.03458 4.05675 4.09173 4.15062 4.30223 4.31569 4.41711 4.47341 4.51132 4.51877 4.52627 4.60687 4.64517 4.66851 4.78016 4.81832 4.85233 4.89381 4.92958 4.93458 5.02171 5.06021 5.13343 5.19556 5.30329 5.40333 5.48484 5.52879 5.68297 5.87030 6.08216 6.37952 6.51855 6.58780 7.11530 7.19972 7.54968 8.09860 8.69905 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002015 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.734326 B =13895.620664 C =15264.927838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.062 3.938 6 N -0.679 5.679 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.993 3.007 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.707 5.707 20 C 0.552 3.448 21 O -0.578 6.578 22 C -0.133 4.133 23 C -0.126 4.126 24 C 0.013 3.987 25 N -0.480 5.480 26 C 0.013 3.987 27 C -0.130 4.130 28 C 0.037 3.963 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.345 0.655 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.412 0.588 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 1.724 20.770 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.358 5.358 20 C 0.338 3.662 21 O -0.457 6.457 22 C -0.137 4.137 23 C -0.165 4.165 24 C -0.116 4.116 25 N -0.199 5.199 26 C -0.116 4.116 27 C -0.169 4.169 28 C -0.092 4.092 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.249 0.751 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.757 1.748 21.354 26.596 hybrid contribution 0.910 0.399 -1.708 1.976 sum -14.847 2.147 19.647 24.719 Atomic orbital electron populations 1.22096 0.94132 1.02905 1.02291 1.20900 0.94653 0.96590 0.83574 0.91147 1.21771 0.93946 1.02365 0.97110 1.22023 0.95912 0.95835 0.92867 1.60108 1.03667 1.61016 1.06363 1.21526 0.90313 0.98928 0.96022 1.20862 0.82414 0.85067 0.89142 1.90488 1.54206 1.52024 1.54170 1.41950 1.06359 1.49254 1.23510 1.19671 0.92353 1.32082 1.02216 0.90239 1.26055 0.95192 0.98097 1.01998 1.69671 1.02957 1.44552 1.38983 0.84924 0.77641 0.78305 0.77455 1.19656 1.19546 1.19684 1.46040 1.66254 1.14588 1.08923 1.19757 0.76293 0.86073 0.84085 1.90698 1.51830 1.17626 1.85568 1.23724 0.98535 0.97747 0.93743 1.23401 0.99226 0.96662 0.97179 1.23901 0.95972 0.96704 0.95035 1.69971 1.04461 1.05538 1.39966 1.23654 0.94901 1.02534 0.90501 1.23207 0.92778 1.02117 0.98825 1.24273 1.01073 0.95112 0.88738 0.91155 0.93665 0.90551 0.89653 0.89618 0.95449 0.90466 0.83693 0.92074 0.87807 0.77002 0.91282 0.75139 0.90701 0.88691 0.88580 0.89606 0.89938 0.88628 0.88648 0.91499 0.90361 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 71.98 0.68 -1.59 16 2 C 0.15 2.39 2.57 44.99 0.12 2.51 16 3 H 0.07 1.44 7.58 -2.38 -0.02 1.42 16 4 C -0.11 -1.85 5.01 30.59 0.15 -1.70 16 5 C 0.06 1.30 5.57 86.30 0.48 1.79 16 6 N -0.68 -19.94 6.13 -517.89 -3.17 -23.12 16 7 C 0.06 2.15 6.17 85.56 0.53 2.68 16 8 C 0.44 20.51 7.82 87.66 0.69 21.20 16 9 O -0.62 -33.97 15.78 -3.07 -0.05 -34.02 16 10 N -0.57 -29.19 5.29 -306.98 -1.62 -30.82 16 11 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 12 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 14 N -0.92 -49.41 13.05 21.66 0.28 -49.12 16 15 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 N -0.71 -10.45 4.53 -442.52 -2.00 -12.45 16 20 C 0.55 10.55 7.25 87.66 0.64 11.18 16 21 O -0.58 -15.90 16.23 -3.03 -0.05 -15.95 16 22 C -0.13 -1.90 1.37 -49.21 -0.07 -1.97 16 23 C -0.13 -1.25 6.14 32.73 0.20 -1.05 16 24 C 0.01 0.13 6.64 86.80 0.58 0.71 16 25 N -0.48 -7.07 6.94 -853.86 -5.93 -12.99 16 26 C 0.01 0.16 6.61 86.36 0.57 0.73 16 27 C -0.13 -1.58 6.05 32.29 0.20 -1.39 16 28 C 0.04 0.64 6.05 87.06 0.53 1.16 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 1.50 7.75 -2.39 -0.02 1.48 16 36 H 0.34 10.69 8.43 -89.69 -0.76 9.93 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.41 4.44 8.60 -92.71 -0.80 3.65 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.63 7.86 -2.39 -0.02 0.62 16 44 H 0.10 0.74 7.69 -2.39 -0.02 0.72 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.10 0.89 7.69 -2.39 -0.02 0.87 16 48 H 0.09 0.86 7.86 -2.38 -0.02 0.84 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.28 411.55 -5.29 -76.57 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -1.34 Total: 41.35 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.57 Total: 15.99 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -12.44 Total: -128.50 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.10 Total: -49.97 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -71.28 -5.29 -76.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320606391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.972 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds