Wall clock time and date at job start Tue Mar 31 2020 22:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47236 * 2 1 4 4 N 1.46501 * 109.46993 * 119.99916 * 2 1 3 5 5 C 1.36939 * 119.99951 * 274.99851 * 4 2 1 6 6 H 1.08000 * 119.99691 * 359.97438 * 5 4 2 7 7 C 1.38804 * 120.00033 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00224 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47140 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46978 * 120.00019 * 9 7 5 12 12 H 1.48497 * 109.47067 * 239.99967 * 9 7 5 13 13 C 1.53000 * 109.47017 * 240.00159 * 2 1 3 14 14 H 1.09004 * 110.91452 * 296.09372 * 13 2 1 15 15 C 1.55448 * 111.11787 * 172.10528 * 13 2 1 16 16 C 1.54321 * 102.96961 * 206.45980 * 15 13 2 17 17 N 1.47026 * 107.26791 * 22.19024 * 16 15 13 18 18 C 1.34780 * 125.64285 * 181.07596 * 17 16 15 19 19 O 1.21287 * 119.99688 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00303 * 359.97438 * 18 17 16 21 21 N 1.46500 * 109.47066 * 179.97438 * 20 18 17 22 22 C 1.34775 * 119.99943 * 180.02562 * 21 20 18 23 23 O 1.21591 * 120.00322 * 359.97438 * 22 21 20 24 24 N 1.34771 * 120.00176 * 180.02562 * 22 21 20 25 25 C 1.47028 * 125.64689 * 359.68953 * 24 22 21 26 26 C 1.54313 * 107.27465 * 180.97246 * 25 24 22 27 27 C 1.55151 * 102.86720 * 22.52125 * 26 25 24 28 28 C 1.47429 * 125.65061 * 179.97438 * 24 22 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 17 16 15 30 30 H 1.09011 * 109.46928 * 59.99855 * 1 2 3 31 31 H 1.08993 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46734 * 300.00754 * 1 2 3 33 33 H 0.96994 * 119.99900 * 95.00251 * 4 2 1 34 34 H 0.96998 * 120.00539 * 179.97438 * 8 7 5 35 35 H 1.08998 * 110.70855 * 88.08785 * 15 13 2 36 36 H 1.08997 * 110.70436 * 324.83533 * 15 13 2 37 37 H 1.08998 * 109.88101 * 262.77542 * 16 15 13 38 38 H 1.08997 * 110.01327 * 141.67909 * 16 15 13 39 39 H 1.09004 * 109.47049 * 299.99920 * 20 18 17 40 40 H 1.08999 * 109.47179 * 59.99802 * 20 18 17 41 41 H 0.96995 * 120.00214 * 359.97438 * 21 20 18 42 42 H 1.09004 * 109.88126 * 300.51205 * 25 24 22 43 43 H 1.08990 * 109.88345 * 61.67951 * 25 24 22 44 44 H 1.09003 * 110.91987 * 264.10671 * 26 25 24 45 45 H 1.08998 * 110.74800 * 140.85567 * 26 25 24 46 46 H 1.08998 * 111.00460 * 206.23221 * 27 26 25 47 47 H 1.08998 * 111.03609 * 82.39264 * 27 26 25 48 48 H 1.09000 * 110.36514 * 274.67007 * 28 24 22 49 49 H 1.08991 * 110.36346 * 36.99501 * 28 24 22 50 50 H 1.09002 * 110.36926 * 94.70918 * 29 17 16 51 51 H 1.08995 * 110.36556 * 216.92202 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6123 -0.6616 3.5090 8 7 2.9253 -1.9387 3.4500 9 14 2.7914 0.2705 5.1179 10 1 2.3775 1.6829 4.9204 11 1 1.9311 -0.3579 6.1524 12 1 4.2084 0.2276 5.5597 13 6 2.0400 -0.7212 -1.2493 14 1 1.7474 -1.7712 -1.2391 15 6 3.5809 -0.5734 -1.3915 16 6 3.8030 -0.7107 -2.9125 17 7 2.5312 -0.3787 -3.5711 18 6 2.3057 -0.4000 -4.8997 19 8 1.2120 -0.1062 -5.3339 20 6 3.4124 -0.7889 -5.8457 21 7 2.9183 -0.7349 -7.2238 22 6 3.7392 -1.0453 -8.2467 23 8 4.8900 -1.3696 -8.0258 24 7 3.2848 -0.9952 -9.5145 25 6 1.9212 -0.6262 -9.9221 26 6 1.8580 -0.7329 -11.4602 27 6 3.0197 -1.7080 -11.7869 28 6 4.0711 -1.3069 -10.7220 29 6 1.5434 -0.0189 -2.5376 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 2.2490 -1.6317 1.1526 34 1 3.2493 -2.3958 4.2418 35 1 4.0958 -1.3691 -0.8532 36 1 3.9081 0.4054 -1.0408 37 1 4.0896 -1.7342 -3.1543 38 1 4.5810 -0.0210 -3.2396 39 1 4.2476 -0.0978 -5.7315 40 1 3.7452 -1.8017 -5.6188 41 1 2.0001 -0.4766 -7.4001 42 1 1.2018 -1.3099 -9.4713 43 1 1.7064 0.3971 -9.6143 44 1 2.0275 0.2384 -11.9250 45 1 0.9030 -1.1501 -11.7794 46 1 3.4001 -1.5390 -12.7943 47 1 2.7084 -2.7446 -11.6579 48 1 4.6273 -0.4287 -11.0498 49 1 4.7506 -2.1368 -10.5284 50 1 1.5194 1.0615 -2.3955 51 1 0.5550 -0.3866 -2.8131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325396838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:30 Heat of formation + Delta-G solvation = -48.665981 kcal Electronic energy + Delta-G solvation = -29199.547772 eV Core-core repulsion = 25134.079427 eV Total energy + Delta-G solvation = -4065.468344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.74154 -40.02037 -38.17100 -37.62959 -35.29140 -34.64983 -32.56301 -32.01084 -30.69323 -29.58876 -29.34794 -28.15278 -26.97898 -24.54924 -23.76000 -22.89144 -21.65481 -21.49052 -20.32036 -19.70333 -19.60438 -18.54654 -17.21872 -17.08743 -16.83175 -16.47713 -16.20218 -15.64796 -15.30397 -14.89791 -14.35566 -14.12462 -14.01731 -13.87780 -13.67559 -13.48705 -13.36304 -13.17999 -13.03610 -12.68558 -12.64654 -12.55465 -12.34391 -12.12947 -11.84681 -11.77997 -11.70095 -11.26213 -11.25858 -10.92094 -10.76357 -10.61499 -10.51235 -10.43407 -10.21365 -10.12404 -9.88202 -9.67197 -9.50062 -8.94800 -8.90073 -8.73872 -6.99424 -5.79790 -3.08393 2.12438 2.37927 2.88707 2.90343 3.41072 3.47280 3.49106 3.65663 4.08451 4.15896 4.22379 4.41554 4.54549 4.74264 4.77672 4.85648 4.89497 4.99618 5.08746 5.13750 5.14999 5.24326 5.28302 5.35633 5.38252 5.45386 5.47485 5.51376 5.63234 5.65515 5.81785 5.84329 5.84616 5.91964 6.02206 6.02804 6.15709 6.18425 6.33418 6.41260 6.52978 6.60225 6.69708 6.83663 7.06295 7.35888 7.62759 7.68160 7.89832 8.27768 8.38630 9.50299 10.07032 10.41879 11.42808 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034353 B = 0.001735 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.878515 B =16133.010881 C =16668.317397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.092 3.908 17 N -0.610 5.610 18 C 0.523 3.477 19 O -0.546 6.546 20 C 0.124 3.876 21 N -0.732 5.732 22 C 0.726 3.274 23 O -0.589 6.589 24 N -0.638 5.638 25 C 0.096 3.904 26 C -0.130 4.130 27 C -0.135 4.135 28 C 0.124 3.876 29 C 0.114 3.886 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.408 0.592 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 1.927 -29.673 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.311 3.689 19 O -0.425 6.425 20 C -0.004 4.004 21 N -0.391 5.391 22 C 0.427 3.573 23 O -0.468 6.468 24 N -0.377 5.377 25 C -0.027 4.027 26 C -0.168 4.168 27 C -0.173 4.173 28 C 0.001 3.999 29 C -0.008 4.008 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.293 1.980 -29.565 29.632 hybrid contribution -0.301 0.247 1.008 1.081 sum -0.594 2.227 -28.557 28.650 Atomic orbital electron populations 1.22504 0.99248 1.00993 1.00095 1.20125 0.91798 0.95158 0.85405 0.93245 1.42371 1.78154 1.10652 1.05116 1.19262 1.36343 0.93884 0.87279 0.91155 1.24719 1.02221 0.95958 0.98010 1.69663 1.50987 1.08645 1.28789 0.86152 0.77284 0.78813 0.84146 1.20596 1.21939 1.21923 1.22725 0.94922 1.00603 0.93960 0.89955 1.22640 0.96632 1.04149 0.92001 1.22296 0.85365 1.00754 0.94632 1.48483 1.14360 1.66609 1.04847 1.20071 0.89152 0.77822 0.81876 1.90683 1.25390 1.50086 1.76299 1.20861 0.95345 1.04058 0.80099 1.44747 1.15862 1.74200 1.04307 1.15264 0.84251 0.78476 0.79285 1.90944 1.17026 1.55487 1.83294 1.47527 1.13066 1.72740 1.04325 1.22045 0.84042 1.00588 0.96069 1.22601 0.99701 1.00530 0.93934 1.22820 0.95617 0.99973 0.98899 1.22096 0.94064 1.00872 0.82848 1.22362 0.92343 0.99881 0.86211 0.94375 0.93430 0.92702 0.78285 0.93589 0.89251 0.90157 0.91090 0.91124 0.88413 0.88383 0.75487 0.91359 0.91376 0.90354 0.89819 0.89574 0.90455 0.91539 0.90233 0.91051 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.27 37.16 0.34 -2.54 16 2 C 0.19 3.37 2.43 -67.93 -0.17 3.20 16 3 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 4 N -0.72 -16.81 4.98 -53.42 -0.27 -17.08 16 5 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 9 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C -0.10 -1.51 2.66 -88.31 -0.24 -1.74 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.57 6.30 -24.74 -0.16 -1.72 16 16 C 0.09 1.00 6.49 -3.06 -0.02 0.98 16 17 N -0.61 -7.58 3.33 -170.53 -0.57 -8.15 16 18 C 0.52 6.67 7.92 -10.98 -0.09 6.59 16 19 O -0.55 -8.37 15.92 5.55 0.09 -8.28 16 20 C 0.12 1.36 5.35 -5.19 -0.03 1.33 16 21 N -0.73 -8.17 5.49 -66.42 -0.36 -8.53 16 22 C 0.73 8.93 8.49 -86.92 -0.74 8.19 16 23 O -0.59 -9.23 16.60 5.29 0.09 -9.14 16 24 N -0.64 -5.92 3.33 -176.23 -0.59 -6.50 16 25 C 0.10 0.61 6.14 -3.07 -0.02 0.59 16 26 C -0.13 -0.52 6.95 -24.91 -0.17 -0.70 16 27 C -0.13 -0.59 7.08 -24.57 -0.17 -0.76 16 28 C 0.12 0.91 6.91 -2.52 -0.02 0.89 16 29 C 0.11 1.54 5.26 -2.53 -0.01 1.52 16 30 H 0.04 0.55 7.23 -51.92 -0.38 0.18 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.38 9.55 7.80 -40.82 -0.32 9.24 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.41 4.31 6.42 -40.82 -0.26 4.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 50 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 51 H 0.08 1.10 7.93 -51.93 -0.41 0.68 16 LS Contribution 410.00 15.07 6.18 6.18 Total: -1.00 -33.23 410.00 -10.38 -43.61 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.92 Total: 8.63 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.73 Total: 8.95 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -1.06 Total: -66.82 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.18 Total: -17.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.23 -10.38 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325396838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.055 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds