Wall clock time and date at job start Tue Mar 31 2020 22:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47236 * 2 1 4 4 N 1.46501 * 109.46993 * 119.99916 * 2 1 3 5 5 C 1.36939 * 119.99951 * 274.99851 * 4 2 1 6 6 H 1.08000 * 119.99691 * 359.97438 * 5 4 2 7 7 C 1.38804 * 120.00033 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00224 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47140 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46978 * 120.00019 * 9 7 5 12 12 H 1.48497 * 109.47067 * 239.99967 * 9 7 5 13 13 C 1.53000 * 109.47017 * 240.00159 * 2 1 3 14 14 H 1.09004 * 110.91452 * 296.09372 * 13 2 1 15 15 C 1.55448 * 111.11787 * 172.10528 * 13 2 1 16 16 C 1.54321 * 102.96961 * 206.45980 * 15 13 2 17 17 N 1.47026 * 107.26791 * 22.19024 * 16 15 13 18 18 C 1.34780 * 125.64285 * 181.07596 * 17 16 15 19 19 O 1.21287 * 119.99688 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00303 * 359.97438 * 18 17 16 21 21 N 1.46500 * 109.47066 * 179.97438 * 20 18 17 22 22 C 1.34775 * 119.99943 * 180.02562 * 21 20 18 23 23 O 1.21591 * 120.00322 * 359.97438 * 22 21 20 24 24 N 1.34771 * 120.00176 * 180.02562 * 22 21 20 25 25 C 1.47028 * 125.64689 * 359.68953 * 24 22 21 26 26 C 1.54313 * 107.27465 * 180.97246 * 25 24 22 27 27 C 1.55151 * 102.86720 * 22.52125 * 26 25 24 28 28 C 1.47429 * 125.65061 * 179.97438 * 24 22 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 17 16 15 30 30 H 1.09011 * 109.46928 * 59.99855 * 1 2 3 31 31 H 1.08993 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46734 * 300.00754 * 1 2 3 33 33 H 0.96994 * 119.99900 * 95.00251 * 4 2 1 34 34 H 0.96998 * 120.00539 * 179.97438 * 8 7 5 35 35 H 1.08998 * 110.70855 * 88.08785 * 15 13 2 36 36 H 1.08997 * 110.70436 * 324.83533 * 15 13 2 37 37 H 1.08998 * 109.88101 * 262.77542 * 16 15 13 38 38 H 1.08997 * 110.01327 * 141.67909 * 16 15 13 39 39 H 1.09004 * 109.47049 * 299.99920 * 20 18 17 40 40 H 1.08999 * 109.47179 * 59.99802 * 20 18 17 41 41 H 0.96995 * 120.00214 * 359.97438 * 21 20 18 42 42 H 1.09004 * 109.88126 * 300.51205 * 25 24 22 43 43 H 1.08990 * 109.88345 * 61.67951 * 25 24 22 44 44 H 1.09003 * 110.91987 * 264.10671 * 26 25 24 45 45 H 1.08998 * 110.74800 * 140.85567 * 26 25 24 46 46 H 1.08998 * 111.00460 * 206.23221 * 27 26 25 47 47 H 1.08998 * 111.03609 * 82.39264 * 27 26 25 48 48 H 1.09000 * 110.36514 * 274.67007 * 28 24 22 49 49 H 1.08991 * 110.36346 * 36.99501 * 28 24 22 50 50 H 1.09002 * 110.36926 * 94.70918 * 29 17 16 51 51 H 1.08995 * 110.36556 * 216.92202 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6123 -0.6616 3.5090 8 7 2.9253 -1.9387 3.4500 9 14 2.7914 0.2705 5.1179 10 1 2.3775 1.6829 4.9204 11 1 1.9311 -0.3579 6.1524 12 1 4.2084 0.2276 5.5597 13 6 2.0400 -0.7212 -1.2493 14 1 1.7474 -1.7712 -1.2391 15 6 3.5809 -0.5734 -1.3915 16 6 3.8030 -0.7107 -2.9125 17 7 2.5312 -0.3787 -3.5711 18 6 2.3057 -0.4000 -4.8997 19 8 1.2120 -0.1062 -5.3339 20 6 3.4124 -0.7889 -5.8457 21 7 2.9183 -0.7349 -7.2238 22 6 3.7392 -1.0453 -8.2467 23 8 4.8900 -1.3696 -8.0258 24 7 3.2848 -0.9952 -9.5145 25 6 1.9212 -0.6262 -9.9221 26 6 1.8580 -0.7329 -11.4602 27 6 3.0197 -1.7080 -11.7869 28 6 4.0711 -1.3069 -10.7220 29 6 1.5434 -0.0189 -2.5376 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 2.2490 -1.6317 1.1526 34 1 3.2493 -2.3958 4.2418 35 1 4.0958 -1.3691 -0.8532 36 1 3.9081 0.4054 -1.0408 37 1 4.0896 -1.7342 -3.1543 38 1 4.5810 -0.0210 -3.2396 39 1 4.2476 -0.0978 -5.7315 40 1 3.7452 -1.8017 -5.6188 41 1 2.0001 -0.4766 -7.4001 42 1 1.2018 -1.3099 -9.4713 43 1 1.7064 0.3971 -9.6143 44 1 2.0275 0.2384 -11.9250 45 1 0.9030 -1.1501 -11.7794 46 1 3.4001 -1.5390 -12.7943 47 1 2.7084 -2.7446 -11.6579 48 1 4.6273 -0.4287 -11.0498 49 1 4.7506 -2.1368 -10.5284 50 1 1.5194 1.0615 -2.3955 51 1 0.5550 -0.3866 -2.8131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325396838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:29 Heat of formation + Delta-G solvation = -71.005058 kcal Electronic energy + Delta-G solvation = -29200.516467 eV Core-core repulsion = 25134.079427 eV Total energy + Delta-G solvation = -4066.437039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.64832 -40.97036 -39.22408 -38.44795 -36.82011 -35.60352 -34.27899 -32.71872 -31.99875 -30.83434 -30.06075 -29.33855 -28.06061 -26.15648 -24.76130 -23.97059 -22.80059 -22.06477 -21.16020 -21.08495 -20.53804 -19.39785 -19.07327 -17.91389 -17.80525 -17.44718 -17.15351 -16.70197 -16.47519 -16.03233 -15.70302 -15.38913 -14.99637 -14.92611 -14.64509 -14.51888 -14.28876 -14.11260 -14.00034 -13.89392 -13.81989 -13.52990 -13.40162 -13.22324 -13.15485 -12.91143 -12.79694 -12.31780 -12.21129 -12.14168 -12.11617 -11.94268 -11.66912 -11.59687 -11.55266 -11.49331 -11.37226 -11.16047 -10.91169 -10.42826 -9.76485 -9.59165 -8.96093 -7.90252 -5.16983 1.30217 1.37564 1.49055 1.50161 1.59016 1.95367 1.99096 2.58853 2.92166 3.23007 3.43909 3.63526 3.66801 3.67704 3.72660 3.85730 4.06849 4.19629 4.25216 4.26846 4.30632 4.33763 4.38601 4.48382 4.53516 4.62468 4.62970 4.69571 4.77602 4.85397 4.88897 4.92698 4.98604 4.99182 5.04556 5.10373 5.12320 5.19321 5.23036 5.24918 5.32895 5.36184 5.40516 5.56848 5.62551 5.92829 6.31931 6.36147 6.79754 6.89195 7.38707 7.39296 8.15749 8.38668 9.33210 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034353 B = 0.001735 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.878515 B =16133.010881 C =16668.317397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.049 0.951 4 N -0.731 5.731 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.298 1.298 12 H -0.296 1.296 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.114 4.114 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.573 6.573 20 C 0.129 3.871 21 N -0.729 5.729 22 C 0.719 3.281 23 O -0.630 6.630 24 N -0.639 5.639 25 C 0.088 3.912 26 C -0.122 4.122 27 C -0.125 4.125 28 C 0.115 3.885 29 C 0.122 3.878 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.373 0.627 34 H 0.248 0.752 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.411 0.589 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 2.970 -31.799 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.067 0.933 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.192 1.192 11 H -0.226 1.226 12 H -0.223 1.223 13 C -0.114 4.114 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.024 4.024 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.453 6.453 20 C 0.002 3.998 21 N -0.388 5.388 22 C 0.420 3.580 23 O -0.511 6.511 24 N -0.377 5.377 25 C -0.034 4.034 26 C -0.160 4.160 27 C -0.163 4.163 28 C -0.008 4.008 29 C -0.001 4.001 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.205 0.795 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.772 3.066 -31.744 31.901 hybrid contribution -0.213 -0.039 1.588 1.603 sum -0.986 3.027 -30.155 30.323 Atomic orbital electron populations 1.22375 0.98166 1.00795 1.00666 1.20310 0.92373 0.94967 0.85015 0.93331 1.42527 1.78304 1.10267 1.05954 1.19607 1.34185 0.94088 0.88297 0.90769 1.25427 1.03389 0.96799 1.01068 1.69804 1.52938 1.10066 1.29133 0.85193 0.76627 0.78257 0.80433 1.19188 1.22592 1.22308 1.22506 0.95993 0.99848 0.93090 0.90602 1.22563 0.95353 1.03316 0.93959 1.22334 0.85156 1.02477 0.92416 1.48471 1.14583 1.66383 1.04720 1.20288 0.89086 0.77157 0.81886 1.90672 1.26570 1.51369 1.76715 1.20858 0.94725 1.04646 0.79605 1.44709 1.15852 1.73949 1.04273 1.15463 0.83853 0.78429 0.80249 1.90905 1.18678 1.57417 1.84115 1.47694 1.14503 1.71679 1.03807 1.22273 0.82413 1.00726 0.97976 1.22623 1.00325 1.01115 0.91907 1.22803 0.94683 0.99969 0.98829 1.22297 0.94855 1.00562 0.83069 1.22199 0.92404 0.99889 0.85623 0.91341 0.94012 0.94522 0.79509 0.94269 0.90491 0.90759 0.89468 0.88840 0.87425 0.87682 0.75130 0.91205 0.91067 0.89316 0.88120 0.87417 0.90541 0.91126 0.91855 0.90541 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.27 71.98 0.67 -4.68 16 2 C 0.18 6.49 2.43 44.99 0.11 6.60 16 3 H 0.05 1.76 8.03 -2.39 -0.02 1.74 16 4 N -0.73 -34.21 4.98 -322.94 -1.61 -35.82 16 5 C -0.23 -12.16 9.93 84.03 0.83 -11.32 16 6 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 7 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 8 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 9 Si 0.96 45.31 29.55 68.60 2.03 47.33 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 13 C -0.09 -2.71 2.66 -9.30 -0.02 -2.73 16 14 H 0.08 2.30 8.14 -2.38 -0.02 2.29 16 15 C -0.11 -2.96 6.30 31.88 0.20 -2.76 16 16 C 0.10 1.93 6.49 86.73 0.56 2.49 16 17 N -0.61 -13.96 3.33 -811.81 -2.70 -16.66 16 18 C 0.53 12.56 7.92 87.66 0.69 13.26 16 19 O -0.57 -16.78 15.92 -3.05 -0.05 -16.83 16 20 C 0.13 2.63 5.35 85.63 0.46 3.09 16 21 N -0.73 -15.59 5.49 -482.30 -2.65 -18.24 16 22 C 0.72 17.37 8.49 179.06 1.52 18.89 16 23 O -0.63 -19.73 16.60 -4.00 -0.07 -19.80 16 24 N -0.64 -11.34 3.33 -829.74 -2.76 -14.10 16 25 C 0.09 0.98 6.14 86.72 0.53 1.51 16 26 C -0.12 -0.66 6.95 31.78 0.22 -0.44 16 27 C -0.12 -0.81 7.08 31.99 0.23 -0.59 16 28 C 0.11 1.58 6.91 86.86 0.60 2.18 16 29 C 0.12 3.06 5.26 86.85 0.46 3.52 16 30 H 0.07 1.86 7.23 -2.38 -0.02 1.84 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.37 18.92 7.80 -92.71 -0.72 18.19 16 34 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.41 8.29 6.42 -92.71 -0.60 7.70 16 42 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 1.07 8.04 -2.39 -0.02 1.05 16 50 H 0.08 1.88 8.04 -2.39 -0.02 1.86 16 51 H 0.07 1.97 7.93 -2.39 -0.02 1.95 16 Total: -1.00 -71.99 410.00 -0.39 -72.38 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.40 Total: 33.79 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 7.53 Total: 25.32 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -9.43 Total: -142.20 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.12 Total: -36.63 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.99 -0.39 -72.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325396838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.374 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds