Wall clock time and date at job start Tue Mar 31 2020 22:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 N 1.46501 * 109.47316 * 239.99976 * 2 1 3 5 5 C 1.36937 * 120.00050 * 84.99927 * 4 2 1 6 6 H 1.07999 * 119.99992 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00220 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00521 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99839 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46980 * 90.00296 * 9 7 5 11 11 H 1.48498 * 109.47145 * 209.99894 * 9 7 5 12 12 H 1.48497 * 109.47241 * 330.00265 * 9 7 5 13 13 C 1.52999 * 109.47236 * 120.00052 * 2 1 3 14 14 H 1.09001 * 110.91724 * 57.11196 * 13 2 1 15 15 C 1.55154 * 111.00250 * 293.21160 * 13 2 1 16 16 C 1.54319 * 102.86680 * 206.22806 * 15 13 2 17 17 N 1.47022 * 107.26902 * 22.52770 * 16 15 13 18 18 C 1.34781 * 125.64365 * 180.96918 * 17 16 15 19 19 O 1.21279 * 119.99932 * 179.68989 * 18 17 16 20 20 C 1.50696 * 120.00173 * 359.69380 * 18 17 16 21 21 N 1.46500 * 109.47243 * 180.02562 * 20 18 17 22 22 C 1.34774 * 120.00221 * 179.97438 * 21 20 18 23 23 O 1.21592 * 119.99753 * 359.97438 * 22 21 20 24 24 N 1.34778 * 120.00384 * 179.97438 * 22 21 20 25 25 C 1.47531 * 125.63415 * 359.95984 * 24 22 21 26 26 C 1.54899 * 104.78276 * 155.91560 * 25 24 22 27 27 C 1.55159 * 101.62026 * 37.00353 * 26 25 24 28 28 C 1.47023 * 125.65076 * 179.97438 * 24 22 21 29 29 C 1.47423 * 108.70628 * 0.70174 * 17 16 15 30 30 H 1.08995 * 109.47170 * 305.26600 * 1 2 3 31 31 H 1.09002 * 109.47304 * 65.26973 * 1 2 3 32 32 H 1.09002 * 109.46708 * 185.26642 * 1 2 3 33 33 H 0.96996 * 120.00181 * 265.00019 * 4 2 1 34 34 H 0.96999 * 120.00430 * 179.97438 * 8 7 5 35 35 H 1.09004 * 110.72345 * 324.78528 * 15 13 2 36 36 H 1.09000 * 110.72374 * 87.88005 * 15 13 2 37 37 H 1.08999 * 109.98927 * 263.05261 * 16 15 13 38 38 H 1.08999 * 109.77664 * 141.88086 * 16 15 13 39 39 H 1.09002 * 109.47705 * 59.99712 * 20 18 17 40 40 H 1.09007 * 109.46945 * 299.99455 * 20 18 17 41 41 H 0.96998 * 120.00101 * 359.97438 * 21 20 18 42 42 H 1.09002 * 110.41068 * 37.07958 * 25 24 22 43 43 H 1.08998 * 110.36591 * 274.73121 * 25 24 22 44 44 H 1.09000 * 111.00566 * 278.91264 * 26 25 24 45 45 H 1.09000 * 111.00522 * 155.09707 * 26 25 24 46 46 H 1.08998 * 110.71972 * 82.83968 * 27 26 25 47 47 H 1.09003 * 110.72295 * 205.94269 * 27 26 25 48 48 H 1.09006 * 109.87992 * 61.60453 * 28 24 22 49 49 H 1.08994 * 110.01009 * 300.51367 * 28 24 22 50 50 H 1.09002 * 110.36344 * 94.94319 * 29 17 16 51 51 H 1.08999 * 110.36428 * 217.15119 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6114 -0.6619 -3.5092 8 7 2.7376 -0.0053 -4.6429 9 14 3.0557 -2.4745 -3.4253 10 1 1.8583 -3.2929 -3.7442 11 1 4.1307 -2.7666 -4.4073 12 1 3.5313 -2.8048 -2.0579 13 6 2.0400 -0.7213 1.2492 14 1 1.6485 -1.7373 1.2991 15 6 1.6872 0.0743 2.5337 16 6 2.7849 -0.3678 3.5242 17 7 3.9210 -0.8544 2.7279 18 6 5.0735 -1.3473 3.2233 19 8 5.9445 -1.7266 2.4694 20 6 5.2798 -1.4273 4.7139 21 7 6.6015 -1.9936 4.9943 22 6 7.0068 -2.1598 6.2688 23 8 6.2757 -1.8393 7.1860 24 7 8.2226 -2.6813 6.5269 25 6 9.2056 -3.1118 5.5145 26 6 10.5750 -3.0307 6.2339 27 6 10.2039 -3.4979 7.6661 28 6 8.7884 -2.9156 7.8635 29 6 3.5883 -0.7198 1.2980 30 1 -0.3633 0.5933 0.8390 31 1 -0.3634 0.4299 -0.9334 32 1 -0.3633 -1.0234 0.0943 33 1 2.2491 -1.6317 -1.1526 34 1 3.0610 -0.4625 -5.4349 35 1 1.7387 1.1474 2.3491 36 1 0.6999 -0.2052 2.9015 37 1 2.4102 -1.1677 4.1628 38 1 3.0956 0.4810 4.1333 39 1 4.5111 -2.0628 5.1536 40 1 5.2146 -0.4277 5.1438 41 1 7.1849 -2.2490 4.2627 42 1 9.1872 -2.4395 4.6568 43 1 9.0025 -4.1353 5.1997 44 1 10.9521 -2.0080 6.2421 45 1 11.2971 -3.7075 5.7770 46 1 10.1850 -4.5862 7.7240 47 1 10.8984 -3.0861 8.3983 48 1 8.1680 -3.6265 8.4092 49 1 8.8471 -1.9764 8.4135 50 1 3.9794 0.2184 0.9042 51 1 3.9881 -1.5629 0.7346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325396840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:37 Heat of formation + Delta-G solvation = -43.333287 kcal Electronic energy + Delta-G solvation = -29511.242818 eV Core-core repulsion = 25446.005717 eV Total energy + Delta-G solvation = -4065.237101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73438 -40.02596 -38.22553 -37.64443 -35.43948 -34.64183 -32.59224 -32.00403 -30.91163 -29.57482 -29.07985 -28.86077 -27.27082 -24.10429 -23.70928 -23.10849 -21.61289 -21.40289 -20.30859 -19.91331 -19.60248 -18.57372 -17.58852 -17.09867 -16.83715 -16.43291 -16.20870 -15.62676 -15.30476 -14.88984 -14.45722 -14.19084 -14.07904 -13.97252 -13.72287 -13.62546 -13.49694 -13.12695 -12.96365 -12.71667 -12.61983 -12.47644 -12.36445 -12.18958 -11.82312 -11.79649 -11.73667 -11.72821 -11.23158 -11.05840 -10.88053 -10.66887 -10.60296 -10.50191 -10.29720 -10.07154 -9.95384 -9.59144 -9.50693 -8.95699 -8.88276 -8.71405 -7.29457 -5.77724 -3.13659 2.13238 2.41934 2.89543 2.90786 3.38207 3.41359 3.46468 3.66247 4.08703 4.15851 4.21009 4.44191 4.54499 4.58986 4.71696 4.80629 4.84141 4.90733 5.06592 5.08336 5.11378 5.18966 5.26910 5.35177 5.36833 5.42667 5.43547 5.48633 5.51996 5.62638 5.68137 5.74734 5.79697 5.85602 5.94676 6.02221 6.03853 6.11908 6.19529 6.25497 6.36271 6.44877 6.69794 6.73829 6.96289 7.37825 7.63184 7.94236 7.97475 8.28074 8.41036 9.19160 9.91909 10.10832 11.40486 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002241 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.364351 B =12493.108633 C =13943.869312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.123 4.123 16 C 0.096 3.904 17 N -0.613 5.613 18 C 0.521 3.479 19 O -0.539 6.539 20 C 0.126 3.874 21 N -0.733 5.733 22 C 0.726 3.274 23 O -0.591 6.591 24 N -0.637 5.637 25 C 0.095 3.905 26 C -0.132 4.132 27 C -0.133 4.133 28 C 0.127 3.873 29 C 0.118 3.882 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.408 0.592 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 -5.087 26.442 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.161 4.161 16 C -0.027 4.027 17 N -0.347 5.347 18 C 0.308 3.692 19 O -0.416 6.416 20 C -0.002 4.002 21 N -0.392 5.392 22 C 0.428 3.572 23 O -0.470 6.470 24 N -0.376 5.376 25 C -0.028 4.028 26 C -0.170 4.170 27 C -0.171 4.171 28 C 0.004 3.996 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.246 0.754 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.613 -4.855 26.526 28.629 hybrid contribution 0.503 -1.458 -0.531 1.631 sum 10.116 -6.312 25.995 28.599 Atomic orbital electron populations 1.22409 0.98483 1.00575 1.00991 1.20136 0.92154 0.95453 0.84275 0.92368 1.42792 1.79744 1.09495 1.07143 1.19029 1.37105 0.95555 0.85502 0.89179 1.24658 1.01363 0.97416 0.95588 1.69692 1.52588 1.35557 1.00267 0.86585 0.78076 0.86916 0.77148 1.21188 1.21784 1.20269 1.22737 0.93986 1.00360 0.95588 0.90105 1.22668 0.97795 1.01213 0.94445 1.22171 0.86816 0.99075 0.94679 1.48505 1.15303 1.61797 1.09111 1.20078 0.81299 0.77598 0.90220 1.90718 1.42001 1.48837 1.60058 1.20848 0.85655 1.01196 0.92517 1.44772 1.18793 1.68844 1.06790 1.15244 0.80587 0.78414 0.82985 1.90932 1.54309 1.57602 1.44108 1.47540 1.15155 1.66687 1.08221 1.22376 0.88157 1.00351 0.91928 1.22756 0.96122 1.02698 0.95411 1.22668 0.95480 1.01408 0.97519 1.21754 0.93524 1.00759 0.83610 1.22328 0.95195 1.03287 0.79551 0.94023 0.92069 0.93725 0.80694 0.93069 0.89976 0.89767 0.91147 0.91058 0.88537 0.88505 0.75382 0.90541 0.91137 0.90378 0.89579 0.90428 0.89759 0.91506 0.91449 0.90395 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.27 37.16 0.34 -2.24 16 2 C 0.19 3.27 2.41 -67.93 -0.16 3.11 16 3 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 4 N -0.75 -16.74 4.61 -53.43 -0.25 -16.98 16 5 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 9 Si 0.88 22.15 27.74 -169.99 -4.71 17.44 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 13 C -0.11 -1.47 2.62 -88.48 -0.23 -1.70 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.22 5.71 -24.90 -0.14 -1.36 16 16 C 0.10 0.89 6.48 -3.07 -0.02 0.87 16 17 N -0.61 -7.89 3.33 -170.53 -0.57 -8.46 16 18 C 0.52 7.10 7.92 -10.99 -0.09 7.01 16 19 O -0.54 -9.22 15.92 5.56 0.09 -9.13 16 20 C 0.13 1.40 5.35 -5.20 -0.03 1.37 16 21 N -0.73 -8.53 5.49 -66.41 -0.36 -8.90 16 22 C 0.73 9.15 8.49 -86.92 -0.74 8.41 16 23 O -0.59 -9.28 16.67 5.28 0.09 -9.19 16 24 N -0.64 -6.18 3.33 -176.16 -0.59 -6.76 16 25 C 0.09 0.66 6.58 -2.48 -0.02 0.64 16 26 C -0.13 -0.63 7.08 -24.59 -0.17 -0.80 16 27 C -0.13 -0.61 6.95 -24.90 -0.17 -0.78 16 28 C 0.13 0.97 6.87 -3.06 -0.02 0.95 16 29 C 0.12 1.82 6.08 -2.53 -0.02 1.81 16 30 H 0.04 0.52 7.69 -51.93 -0.40 0.12 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.36 8.09 5.66 -40.82 -0.23 7.86 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.41 4.65 5.92 -40.82 -0.24 4.41 16 42 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 51 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -35.43 406.67 -9.97 -45.40 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.85 Total: 8.18 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -1.72 Total: 10.59 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.99 Total: -69.41 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.18 Total: -18.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.43 -9.97 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325396840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.064 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds