Wall clock time and date at job start Tue Mar 31 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 N 1.46501 * 109.47316 * 239.99976 * 2 1 3 5 5 C 1.36937 * 120.00050 * 84.99927 * 4 2 1 6 6 H 1.07999 * 119.99992 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00220 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00521 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99839 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46980 * 90.00296 * 9 7 5 11 11 H 1.48498 * 109.47145 * 209.99894 * 9 7 5 12 12 H 1.48497 * 109.47241 * 330.00265 * 9 7 5 13 13 C 1.52999 * 109.47236 * 120.00052 * 2 1 3 14 14 H 1.09001 * 110.91724 * 57.11196 * 13 2 1 15 15 C 1.55154 * 111.00250 * 293.21160 * 13 2 1 16 16 C 1.54319 * 102.86680 * 206.22806 * 15 13 2 17 17 N 1.47022 * 107.26902 * 22.52770 * 16 15 13 18 18 C 1.34781 * 125.64365 * 180.96918 * 17 16 15 19 19 O 1.21279 * 119.99932 * 179.68989 * 18 17 16 20 20 C 1.50696 * 120.00173 * 359.69380 * 18 17 16 21 21 N 1.46500 * 109.47243 * 180.02562 * 20 18 17 22 22 C 1.34774 * 120.00221 * 179.97438 * 21 20 18 23 23 O 1.21592 * 119.99753 * 359.97438 * 22 21 20 24 24 N 1.34778 * 120.00384 * 179.97438 * 22 21 20 25 25 C 1.47531 * 125.63415 * 359.95984 * 24 22 21 26 26 C 1.54899 * 104.78276 * 155.91560 * 25 24 22 27 27 C 1.55159 * 101.62026 * 37.00353 * 26 25 24 28 28 C 1.47023 * 125.65076 * 179.97438 * 24 22 21 29 29 C 1.47423 * 108.70628 * 0.70174 * 17 16 15 30 30 H 1.08995 * 109.47170 * 305.26600 * 1 2 3 31 31 H 1.09002 * 109.47304 * 65.26973 * 1 2 3 32 32 H 1.09002 * 109.46708 * 185.26642 * 1 2 3 33 33 H 0.96996 * 120.00181 * 265.00019 * 4 2 1 34 34 H 0.96999 * 120.00430 * 179.97438 * 8 7 5 35 35 H 1.09004 * 110.72345 * 324.78528 * 15 13 2 36 36 H 1.09000 * 110.72374 * 87.88005 * 15 13 2 37 37 H 1.08999 * 109.98927 * 263.05261 * 16 15 13 38 38 H 1.08999 * 109.77664 * 141.88086 * 16 15 13 39 39 H 1.09002 * 109.47705 * 59.99712 * 20 18 17 40 40 H 1.09007 * 109.46945 * 299.99455 * 20 18 17 41 41 H 0.96998 * 120.00101 * 359.97438 * 21 20 18 42 42 H 1.09002 * 110.41068 * 37.07958 * 25 24 22 43 43 H 1.08998 * 110.36591 * 274.73121 * 25 24 22 44 44 H 1.09000 * 111.00566 * 278.91264 * 26 25 24 45 45 H 1.09000 * 111.00522 * 155.09707 * 26 25 24 46 46 H 1.08998 * 110.71972 * 82.83968 * 27 26 25 47 47 H 1.09003 * 110.72295 * 205.94269 * 27 26 25 48 48 H 1.09006 * 109.87992 * 61.60453 * 28 24 22 49 49 H 1.08994 * 110.01009 * 300.51367 * 28 24 22 50 50 H 1.09002 * 110.36344 * 94.94319 * 29 17 16 51 51 H 1.08999 * 110.36428 * 217.15119 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4242 7 6 2.6114 -0.6619 -3.5092 8 7 2.7376 -0.0053 -4.6429 9 14 3.0557 -2.4745 -3.4253 10 1 1.8583 -3.2929 -3.7442 11 1 4.1307 -2.7666 -4.4073 12 1 3.5313 -2.8048 -2.0579 13 6 2.0400 -0.7213 1.2492 14 1 1.6485 -1.7373 1.2991 15 6 1.6872 0.0743 2.5337 16 6 2.7849 -0.3678 3.5242 17 7 3.9210 -0.8544 2.7279 18 6 5.0735 -1.3473 3.2233 19 8 5.9445 -1.7266 2.4694 20 6 5.2798 -1.4273 4.7139 21 7 6.6015 -1.9936 4.9943 22 6 7.0068 -2.1598 6.2688 23 8 6.2757 -1.8393 7.1860 24 7 8.2226 -2.6813 6.5269 25 6 9.2056 -3.1118 5.5145 26 6 10.5750 -3.0307 6.2339 27 6 10.2039 -3.4979 7.6661 28 6 8.7884 -2.9156 7.8635 29 6 3.5883 -0.7198 1.2980 30 1 -0.3633 0.5933 0.8390 31 1 -0.3634 0.4299 -0.9334 32 1 -0.3633 -1.0234 0.0943 33 1 2.2491 -1.6317 -1.1526 34 1 3.0610 -0.4625 -5.4349 35 1 1.7387 1.1474 2.3491 36 1 0.6999 -0.2052 2.9015 37 1 2.4102 -1.1677 4.1628 38 1 3.0956 0.4810 4.1333 39 1 4.5111 -2.0628 5.1536 40 1 5.2146 -0.4277 5.1438 41 1 7.1849 -2.2490 4.2627 42 1 9.1872 -2.4395 4.6568 43 1 9.0025 -4.1353 5.1997 44 1 10.9521 -2.0080 6.2421 45 1 11.2971 -3.7075 5.7770 46 1 10.1850 -4.5862 7.7240 47 1 10.8984 -3.0861 8.3983 48 1 8.1680 -3.6265 8.4092 49 1 8.8471 -1.9764 8.4135 50 1 3.9794 0.2184 0.9042 51 1 3.9881 -1.5629 0.7346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325396840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:36 Heat of formation + Delta-G solvation = -68.797827 kcal Electronic energy + Delta-G solvation = -29512.347044 eV Core-core repulsion = 25446.005717 eV Total energy + Delta-G solvation = -4066.341327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66683 -40.98728 -39.29050 -38.47119 -36.95344 -35.62004 -34.35509 -32.78693 -32.35901 -30.43768 -30.26223 -29.86578 -28.23372 -25.66475 -24.81988 -23.99042 -22.75327 -22.05565 -21.31570 -21.17298 -20.54290 -19.67924 -19.24930 -17.93712 -17.81018 -17.39782 -17.18580 -16.70039 -16.52912 -16.20755 -15.73512 -15.45618 -15.05516 -15.02312 -14.58479 -14.53694 -14.38114 -14.20543 -14.03705 -13.94454 -13.89088 -13.62598 -13.53039 -13.24019 -13.15397 -12.95544 -12.71235 -12.46807 -12.23018 -12.18437 -12.04436 -11.93238 -11.74095 -11.69933 -11.62260 -11.49176 -11.39826 -11.16822 -10.98461 -10.45193 -9.77358 -9.61072 -9.29614 -8.01420 -5.32790 1.28776 1.35696 1.36435 1.38290 1.44624 1.94304 1.97145 2.47547 2.89055 3.21181 3.31333 3.50865 3.63655 3.65806 3.69043 3.81407 4.00043 4.04918 4.21442 4.23725 4.28081 4.35137 4.43017 4.46259 4.50857 4.57780 4.61572 4.71953 4.83338 4.83940 4.87640 4.90031 4.97083 4.99478 5.04227 5.08729 5.09030 5.17962 5.21115 5.23780 5.31233 5.33930 5.41315 5.63711 5.80524 5.88885 6.23331 6.37291 6.76742 6.89165 7.10100 7.36235 7.87931 8.04190 9.20341 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002241 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.364351 B =12493.108633 C =13943.869312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 H 0.047 0.953 4 N -0.753 5.753 5 C -0.217 4.217 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.301 1.301 12 H -0.259 1.259 13 C -0.097 4.097 14 H 0.088 0.912 15 C -0.113 4.113 16 C 0.091 3.909 17 N -0.611 5.611 18 C 0.519 3.481 19 O -0.582 6.582 20 C 0.135 3.865 21 N -0.733 5.733 22 C 0.720 3.280 23 O -0.627 6.627 24 N -0.639 5.639 25 C 0.088 3.912 26 C -0.125 4.125 27 C -0.122 4.122 28 C 0.118 3.882 29 C 0.119 3.881 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.362 0.638 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.409 0.591 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 -6.322 29.723 31.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.397 5.397 5 C -0.348 4.348 6 H 0.078 0.922 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.228 1.228 12 H -0.184 1.184 13 C -0.117 4.117 14 H 0.107 0.893 15 C -0.151 4.151 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.308 3.692 19 O -0.462 6.462 20 C 0.007 3.993 21 N -0.392 5.392 22 C 0.421 3.579 23 O -0.509 6.509 24 N -0.377 5.377 25 C -0.034 4.034 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.005 4.005 29 C -0.004 4.004 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.194 0.806 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.247 0.753 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.124 0.876 46 H 0.107 0.893 47 H 0.120 0.880 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.421 -6.091 29.886 31.923 hybrid contribution 0.541 -0.964 -1.493 1.858 sum 9.962 -7.055 28.393 30.906 Atomic orbital electron populations 1.22259 0.96487 1.01647 1.01044 1.20413 0.93402 0.94905 0.83891 0.93493 1.42862 1.79966 1.09566 1.07257 1.19010 1.34236 0.94434 0.87128 0.92186 1.25411 1.02891 1.01947 0.95453 1.69865 1.55172 1.37448 1.01124 0.85507 0.77572 0.81662 0.77596 1.20410 1.22819 1.18357 1.22567 0.92343 1.01044 0.95717 0.89348 1.22711 0.99551 1.00858 0.91947 1.22486 0.85236 1.00856 0.94455 1.48546 1.16116 1.61341 1.08347 1.20533 0.80846 0.76799 0.91059 1.90696 1.43514 1.50771 1.61250 1.20857 0.85876 1.02251 0.90291 1.44788 1.19053 1.68732 1.06586 1.15421 0.81240 0.78533 0.82676 1.90893 1.55637 1.59357 1.44982 1.47708 1.14627 1.65559 1.09764 1.22587 0.88795 1.00493 0.91561 1.22770 0.95043 1.03280 0.95226 1.22662 0.93515 1.01974 0.97795 1.21953 0.95288 1.00512 0.82714 1.22096 0.96485 1.00745 0.81048 0.90021 0.95214 0.92853 0.80562 0.93578 0.89526 0.86706 0.88542 0.88720 0.87062 0.87157 0.75328 0.90920 0.90458 0.90453 0.87558 0.89331 0.88022 0.92127 0.92173 0.92531 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.27 71.98 0.67 -3.85 16 2 C 0.18 6.06 2.41 44.99 0.11 6.17 16 3 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 4 N -0.75 -33.63 4.61 -322.94 -1.49 -35.12 16 5 C -0.22 -12.12 10.41 84.03 0.87 -11.25 16 6 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.98 -63.68 13.97 21.65 0.30 -63.37 16 9 Si 0.95 46.69 27.74 68.60 1.90 48.59 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 12 H -0.26 -11.77 6.52 99.48 0.65 -11.13 16 13 C -0.10 -2.45 2.62 -9.40 -0.02 -2.47 16 14 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 15 C -0.11 -1.76 5.71 31.78 0.18 -1.57 16 16 C 0.09 1.33 6.48 86.73 0.56 1.89 16 17 N -0.61 -14.64 3.33 -811.82 -2.70 -17.34 16 18 C 0.52 13.62 7.92 87.65 0.69 14.32 16 19 O -0.58 -20.10 15.92 -3.03 -0.05 -20.15 16 20 C 0.13 2.76 5.35 85.63 0.46 3.22 16 21 N -0.73 -16.52 5.49 -482.29 -2.65 -19.17 16 22 C 0.72 17.71 8.49 179.05 1.52 19.23 16 23 O -0.63 -19.33 16.67 -4.01 -0.07 -19.40 16 24 N -0.64 -11.90 3.33 -829.50 -2.76 -14.66 16 25 C 0.09 1.11 6.58 86.83 0.57 1.68 16 26 C -0.13 -0.92 7.08 31.98 0.23 -0.69 16 27 C -0.12 -0.84 6.95 31.78 0.22 -0.62 16 28 C 0.12 1.70 6.87 86.73 0.60 2.30 16 29 C 0.12 3.63 6.08 86.85 0.53 4.16 16 30 H 0.08 1.74 7.69 -2.39 -0.02 1.72 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 34 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.09 1.33 8.01 -2.38 -0.02 1.31 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.41 9.22 5.92 -92.71 -0.55 8.67 16 42 H 0.07 0.97 7.30 -2.39 -0.02 0.95 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 51 H 0.05 1.75 8.03 -2.39 -0.02 1.73 16 Total: -1.00 -81.37 406.67 -0.07 -81.44 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.21 Total: 30.11 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: 7.65 Total: 29.07 kcal Atomic # 7 Polarization: -140.37 SS G_CDS: -9.29 Total: -149.67 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.11 Total: -39.54 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.59 kcal Total: -81.37 -0.07 -81.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325396840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.641 kcal (2) G-P(sol) polarization free energy of solvation -81.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds