Wall clock time and date at job start Tue Mar 31 2020 22:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 N 1.46503 * 109.46831 * 119.99544 * 2 1 3 5 5 C 1.34771 * 120.00294 * 274.99575 * 4 2 1 6 6 O 1.21289 * 119.99686 * 4.96887 * 5 4 2 7 7 C 1.50694 * 120.00475 * 184.96299 * 5 4 2 8 8 N 1.46505 * 109.47167 * 324.46217 * 7 5 4 9 9 C 1.34778 * 119.99788 * 303.14421 * 8 7 5 10 10 N 1.34770 * 119.99869 * 185.18580 * 9 8 7 11 11 O 1.21589 * 119.99910 * 5.18746 * 9 8 7 12 12 C 1.53000 * 109.47386 * 204.46116 * 7 5 4 13 13 C 1.53003 * 109.47120 * 179.97438 * 12 7 5 14 14 C 1.52995 * 109.47215 * 59.99830 * 13 12 7 15 15 C 1.53000 * 109.47216 * 300.00112 * 14 13 12 16 16 C 1.52998 * 109.47307 * 60.00096 * 15 14 13 17 17 C 1.52996 * 109.47193 * 239.99899 * 2 1 3 18 18 C 1.53494 * 114.20641 * 174.91528 * 17 2 1 19 19 N 1.47068 * 87.98812 * 220.34143 * 18 17 2 20 20 C 1.36936 * 136.06480 * 207.08595 * 19 18 17 21 21 H 1.08003 * 119.99317 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00364 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99794 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46835 * 90.00116 * 24 22 20 26 26 H 1.48498 * 109.47028 * 209.99836 * 24 22 20 27 27 H 1.48494 * 109.47484 * 329.99945 * 24 22 20 28 28 C 1.47070 * 87.88178 * 27.34072 * 19 18 17 29 29 H 1.09000 * 109.46803 * 64.96976 * 1 2 3 30 30 H 1.08995 * 109.47066 * 184.96471 * 1 2 3 31 31 H 1.08997 * 109.46813 * 304.97208 * 1 2 3 32 32 H 0.96995 * 119.99728 * 95.00547 * 4 2 1 33 33 H 0.96996 * 120.00400 * 123.13964 * 8 7 5 34 34 H 0.96995 * 120.00593 * 359.97438 * 10 9 8 35 35 H 0.97002 * 119.99725 * 180.02562 * 10 9 8 36 36 H 1.08993 * 109.47079 * 299.99982 * 12 7 5 37 37 H 1.08995 * 109.47193 * 60.00176 * 12 7 5 38 38 H 1.09006 * 109.47087 * 300.00293 * 13 12 7 39 39 H 1.08997 * 109.47183 * 179.97438 * 13 12 7 40 40 H 1.08999 * 109.47316 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.47333 * 59.99819 * 14 13 12 42 42 H 1.08997 * 109.47543 * 299.99852 * 15 14 13 43 43 H 1.09004 * 109.47174 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47737 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47572 * 59.99865 * 16 15 14 46 46 H 1.09005 * 113.27854 * 307.97663 * 17 2 1 47 47 H 1.09002 * 113.47123 * 105.56678 * 18 17 2 48 48 H 1.09003 * 113.47104 * 335.11862 * 18 17 2 49 49 H 0.96996 * 119.99643 * 179.97438 * 23 22 20 50 50 H 1.09001 * 113.46959 * 87.44071 * 28 19 18 51 51 H 1.09000 * 113.46735 * 217.87718 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0182 2.3572 6 8 1.7746 1.1334 2.4354 7 6 2.7538 -0.6971 3.5579 8 7 2.3593 -2.1080 3.5724 9 6 1.0537 -2.4427 3.5695 10 7 0.6891 -3.7347 3.6882 11 8 0.2050 -1.5790 3.4598 12 6 2.2569 -0.0155 4.8344 13 6 2.8724 -0.7053 6.0536 14 6 4.3972 -0.6034 5.9815 15 6 4.8941 -1.2850 4.7050 16 6 4.2787 -0.5952 3.4858 17 6 2.0400 -0.7212 -1.2492 18 6 3.5646 -0.6781 -1.4225 19 7 3.3430 -0.4660 -2.8609 20 6 4.0355 -0.7236 -4.0138 21 1 5.0028 -1.2018 -3.9672 22 6 3.4944 -0.3702 -5.2423 23 7 2.3154 0.2120 -5.2990 24 14 4.4395 -0.7210 -6.8149 25 1 4.0747 -2.0685 -7.3215 26 1 4.0976 0.3011 -7.8364 27 1 5.8975 -0.6747 -6.5370 28 6 2.0531 0.1503 -2.5158 29 1 -0.3633 0.4348 -0.9312 30 1 -0.3633 -1.0238 0.0889 31 1 -0.3633 0.5890 0.8421 32 1 2.2490 -1.6316 1.1527 33 1 3.0376 -2.8012 3.5840 34 1 1.3662 -4.4237 3.7754 35 1 -0.2505 -3.9756 3.6858 36 1 2.5504 1.0341 4.8237 37 1 1.1706 -0.0885 4.8861 38 1 2.5785 -1.7549 6.0641 39 1 2.5188 -0.2195 6.9630 40 1 4.8357 -1.0944 6.8502 41 1 4.6912 0.4462 5.9709 42 1 4.6002 -2.3346 4.7154 43 1 5.9805 -1.2120 4.6534 44 1 4.6330 -1.0804 2.5764 45 1 4.5726 0.4544 3.4752 46 1 1.6027 -1.7106 -1.3841 47 1 4.0545 -1.6245 -1.1938 48 1 4.0341 0.1711 -0.9259 49 1 1.9374 0.4593 -6.1574 50 1 2.1240 1.2179 -2.3073 51 1 1.2552 -0.0903 -3.2183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330055177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:56 Heat of formation + Delta-G solvation = -22.933506 kcal Electronic energy + Delta-G solvation = -31593.551075 eV Core-core repulsion = 27529.198574 eV Total energy + Delta-G solvation = -4064.352500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.27843 -39.18789 -38.44322 -37.54360 -34.72156 -34.16248 -33.55909 -32.11258 -31.15968 -30.33637 -29.60575 -27.47119 -24.79808 -24.17196 -23.54847 -23.00522 -22.01091 -21.23605 -20.20144 -19.56550 -19.07486 -18.53199 -17.56315 -16.98128 -16.67781 -16.02294 -15.49047 -15.21599 -14.88998 -14.78803 -14.55849 -14.35353 -14.09295 -13.96393 -13.85228 -13.43213 -13.10414 -13.01495 -12.57683 -12.47236 -12.45145 -12.18527 -11.82816 -11.51576 -11.44396 -11.36748 -11.12640 -10.92078 -10.88196 -10.84982 -10.69296 -10.61922 -10.30760 -10.29116 -10.01554 -9.86429 -9.82264 -9.76332 -9.21309 -8.93256 -8.80535 -8.63527 -6.86203 -5.75602 -3.08131 2.47885 2.95249 3.05807 3.39093 3.42146 3.43700 3.46168 4.20851 4.39474 4.43281 4.46018 4.49533 4.83533 4.94257 5.00325 5.11806 5.18560 5.23249 5.31136 5.32055 5.45841 5.46234 5.62157 5.65669 5.72345 5.79182 5.81279 5.84591 5.92774 5.96236 6.02239 6.10084 6.18487 6.24875 6.27593 6.38388 6.42414 6.47023 6.60218 6.65803 6.67856 6.75068 6.95730 7.24245 7.38158 7.57546 7.69340 7.83581 7.99093 8.42834 8.53234 9.04646 9.71308 10.66029 11.41924 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002837 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.156819 B = 9868.725503 C =10364.981460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.157 3.843 3 H 0.084 0.916 4 N -0.709 5.709 5 C 0.525 3.475 6 O -0.538 6.538 7 C 0.186 3.814 8 N -0.738 5.738 9 C 0.702 3.298 10 N -0.868 5.868 11 O -0.571 6.571 12 C -0.115 4.115 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.152 4.152 18 C 0.127 3.873 19 N -0.611 5.611 20 C -0.219 4.219 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.169 3.831 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.393 0.607 33 H 0.398 0.602 34 H 0.395 0.605 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.034 0.966 48 H 0.030 0.970 49 H 0.254 0.746 50 H 0.026 0.974 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -8.955 24.843 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 H 0.102 0.898 4 N -0.358 5.358 5 C 0.309 3.691 6 O -0.414 6.414 7 C 0.096 3.904 8 N -0.398 5.398 9 C 0.400 3.600 10 N -0.436 5.436 11 O -0.447 6.447 12 C -0.154 4.154 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.172 4.172 18 C 0.001 3.999 19 N -0.336 5.336 20 C -0.346 4.346 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.042 3.958 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.233 0.767 34 H 0.223 0.777 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.032 -7.216 24.391 25.457 hybrid contribution 0.850 -1.423 -0.912 1.892 sum 1.883 -8.640 23.479 25.089 Atomic orbital electron populations 1.22035 0.95399 1.01637 1.01996 1.20975 0.93984 0.96919 0.82885 0.89836 1.45932 1.66610 1.13587 1.09663 1.20360 0.78081 0.86742 0.83889 1.90681 1.49007 1.17960 1.83733 1.20398 0.95346 0.79974 0.94708 1.45287 1.05941 1.07687 1.80852 1.16014 0.83019 0.83345 0.77651 1.43000 1.12154 1.06541 1.81919 1.91054 1.49700 1.47971 1.55980 1.21745 1.02366 0.99858 0.91458 1.21491 0.95074 1.00807 0.97788 1.21583 0.95857 1.01199 0.97314 1.21510 1.00367 0.99317 0.94069 1.21809 0.90997 1.03562 0.99556 1.23686 0.97807 1.00779 0.94977 1.22343 0.93077 0.97542 0.86975 1.45564 1.19864 1.68759 0.99414 1.18920 1.00247 1.33270 0.82169 0.90204 1.24803 0.97310 1.00922 0.97454 1.69824 1.16914 1.45734 1.24092 0.86112 0.78950 0.77477 0.83160 1.21535 1.21606 1.20701 1.22061 0.90571 0.93314 0.89830 0.91600 0.93103 0.92540 0.77392 0.76688 0.77748 0.75318 0.90020 0.89863 0.92152 0.91839 0.91970 0.91626 0.91967 0.91118 0.90330 0.89287 0.89263 0.94735 0.95197 0.93610 0.95608 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.48 37.16 0.35 -2.21 16 2 C 0.16 2.68 2.30 -67.93 -0.16 2.52 16 3 H 0.08 1.60 7.50 -51.93 -0.39 1.21 16 4 N -0.71 -10.29 4.66 -53.81 -0.25 -10.55 16 5 C 0.53 7.94 4.98 -10.99 -0.05 7.89 16 6 O -0.54 -10.29 15.80 5.55 0.09 -10.21 16 7 C 0.19 1.96 0.60 -132.97 -0.08 1.88 16 8 N -0.74 -5.87 3.36 -53.50 -0.18 -6.05 16 9 C 0.70 7.13 7.88 -86.92 -0.69 6.44 16 10 N -0.87 -5.16 8.88 27.63 0.25 -4.91 16 11 O -0.57 -8.77 14.52 5.29 0.08 -8.70 16 12 C -0.12 -1.29 4.09 -26.73 -0.11 -1.40 16 13 C -0.11 -0.90 5.77 -26.73 -0.15 -1.06 16 14 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 15 C -0.12 -0.67 5.75 -26.73 -0.15 -0.83 16 16 C -0.12 -1.01 4.78 -26.73 -0.13 -1.13 16 17 C -0.15 -2.87 3.52 -89.97 -0.32 -3.19 16 18 C 0.13 2.61 8.13 -8.51 -0.07 2.54 16 19 N -0.61 -15.92 3.78 -184.59 -0.70 -16.62 16 20 C -0.22 -6.21 10.75 -15.06 -0.16 -6.38 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.63 11.50 55.49 0.64 -26.99 16 24 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.17 4.04 6.98 -8.37 -0.06 3.98 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.39 4.97 7.77 -40.82 -0.32 4.65 16 33 H 0.40 1.91 7.24 -40.82 -0.30 1.62 16 34 H 0.40 1.06 8.85 -40.82 -0.36 0.70 16 35 H 0.41 2.34 8.93 -40.82 -0.36 1.98 16 36 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 37 H 0.08 1.18 6.58 -51.93 -0.34 0.83 16 38 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.28 6.80 -51.93 -0.35 -0.07 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 49 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 51 H 0.07 1.93 7.11 -51.93 -0.37 1.56 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -36.71 397.84 -9.76 -46.48 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.63 Total: 6.51 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.03 Total: 7.80 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.24 Total: -65.12 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.71 -9.76 -46.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330055177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.542 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds