Wall clock time and date at job start Tue Mar 31 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 N 1.46503 * 109.46831 * 119.99544 * 2 1 3 5 5 C 1.34771 * 120.00294 * 274.99575 * 4 2 1 6 6 O 1.21289 * 119.99686 * 4.96887 * 5 4 2 7 7 C 1.50694 * 120.00475 * 184.96299 * 5 4 2 8 8 N 1.46505 * 109.47167 * 324.46217 * 7 5 4 9 9 C 1.34778 * 119.99788 * 303.14421 * 8 7 5 10 10 N 1.34770 * 119.99869 * 185.18580 * 9 8 7 11 11 O 1.21589 * 119.99910 * 5.18746 * 9 8 7 12 12 C 1.53000 * 109.47386 * 204.46116 * 7 5 4 13 13 C 1.53003 * 109.47120 * 179.97438 * 12 7 5 14 14 C 1.52995 * 109.47215 * 59.99830 * 13 12 7 15 15 C 1.53000 * 109.47216 * 300.00112 * 14 13 12 16 16 C 1.52998 * 109.47307 * 60.00096 * 15 14 13 17 17 C 1.52996 * 109.47193 * 239.99899 * 2 1 3 18 18 C 1.53494 * 114.20641 * 174.91528 * 17 2 1 19 19 N 1.47068 * 87.98812 * 220.34143 * 18 17 2 20 20 C 1.36936 * 136.06480 * 207.08595 * 19 18 17 21 21 H 1.08003 * 119.99317 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00364 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99794 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46835 * 90.00116 * 24 22 20 26 26 H 1.48498 * 109.47028 * 209.99836 * 24 22 20 27 27 H 1.48494 * 109.47484 * 329.99945 * 24 22 20 28 28 C 1.47070 * 87.88178 * 27.34072 * 19 18 17 29 29 H 1.09000 * 109.46803 * 64.96976 * 1 2 3 30 30 H 1.08995 * 109.47066 * 184.96471 * 1 2 3 31 31 H 1.08997 * 109.46813 * 304.97208 * 1 2 3 32 32 H 0.96995 * 119.99728 * 95.00547 * 4 2 1 33 33 H 0.96996 * 120.00400 * 123.13964 * 8 7 5 34 34 H 0.96995 * 120.00593 * 359.97438 * 10 9 8 35 35 H 0.97002 * 119.99725 * 180.02562 * 10 9 8 36 36 H 1.08993 * 109.47079 * 299.99982 * 12 7 5 37 37 H 1.08995 * 109.47193 * 60.00176 * 12 7 5 38 38 H 1.09006 * 109.47087 * 300.00293 * 13 12 7 39 39 H 1.08997 * 109.47183 * 179.97438 * 13 12 7 40 40 H 1.08999 * 109.47316 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.47333 * 59.99819 * 14 13 12 42 42 H 1.08997 * 109.47543 * 299.99852 * 15 14 13 43 43 H 1.09004 * 109.47174 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47737 * 179.97438 * 16 15 14 45 45 H 1.09002 * 109.47572 * 59.99865 * 16 15 14 46 46 H 1.09005 * 113.27854 * 307.97663 * 17 2 1 47 47 H 1.09002 * 113.47123 * 105.56678 * 18 17 2 48 48 H 1.09003 * 113.47104 * 335.11862 * 18 17 2 49 49 H 0.96996 * 119.99643 * 179.97438 * 23 22 20 50 50 H 1.09001 * 113.46959 * 87.44071 * 28 19 18 51 51 H 1.09000 * 113.46735 * 217.87718 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0182 2.3572 6 8 1.7746 1.1334 2.4354 7 6 2.7538 -0.6971 3.5579 8 7 2.3593 -2.1080 3.5724 9 6 1.0537 -2.4427 3.5695 10 7 0.6891 -3.7347 3.6882 11 8 0.2050 -1.5790 3.4598 12 6 2.2569 -0.0155 4.8344 13 6 2.8724 -0.7053 6.0536 14 6 4.3972 -0.6034 5.9815 15 6 4.8941 -1.2850 4.7050 16 6 4.2787 -0.5952 3.4858 17 6 2.0400 -0.7212 -1.2492 18 6 3.5646 -0.6781 -1.4225 19 7 3.3430 -0.4660 -2.8609 20 6 4.0355 -0.7236 -4.0138 21 1 5.0028 -1.2018 -3.9672 22 6 3.4944 -0.3702 -5.2423 23 7 2.3154 0.2120 -5.2990 24 14 4.4395 -0.7210 -6.8149 25 1 4.0747 -2.0685 -7.3215 26 1 4.0976 0.3011 -7.8364 27 1 5.8975 -0.6747 -6.5370 28 6 2.0531 0.1503 -2.5158 29 1 -0.3633 0.4348 -0.9312 30 1 -0.3633 -1.0238 0.0889 31 1 -0.3633 0.5890 0.8421 32 1 2.2490 -1.6316 1.1527 33 1 3.0376 -2.8012 3.5840 34 1 1.3662 -4.4237 3.7754 35 1 -0.2505 -3.9756 3.6858 36 1 2.5504 1.0341 4.8237 37 1 1.1706 -0.0885 4.8861 38 1 2.5785 -1.7549 6.0641 39 1 2.5188 -0.2195 6.9630 40 1 4.8357 -1.0944 6.8502 41 1 4.6912 0.4462 5.9709 42 1 4.6002 -2.3346 4.7154 43 1 5.9805 -1.2120 4.6534 44 1 4.6330 -1.0804 2.5764 45 1 4.5726 0.4544 3.4752 46 1 1.6027 -1.7106 -1.3841 47 1 4.0545 -1.6245 -1.1938 48 1 4.0341 0.1711 -0.9259 49 1 1.9374 0.4593 -6.1574 50 1 2.1240 1.2179 -2.3073 51 1 1.2552 -0.0903 -3.2183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330055177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:55 Heat of formation + Delta-G solvation = -51.643091 kcal Electronic energy + Delta-G solvation = -31594.796016 eV Core-core repulsion = 27529.198574 eV Total energy + Delta-G solvation = -4065.597442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21105 -40.53761 -39.69265 -38.61073 -36.20398 -35.01934 -34.35217 -34.02004 -31.97405 -31.55980 -30.45716 -29.39681 -26.49173 -25.85536 -24.76531 -23.68544 -22.97813 -22.48485 -21.40978 -20.90788 -20.10505 -19.28431 -18.80441 -18.51681 -17.70908 -17.30095 -16.83815 -16.33046 -16.13081 -15.84335 -15.81147 -15.53998 -15.29575 -15.12013 -14.84891 -14.69133 -14.61248 -14.17144 -13.76143 -13.52955 -13.32925 -13.26575 -13.19542 -13.10029 -13.00694 -12.95938 -12.71942 -12.43554 -12.10015 -12.06438 -11.83878 -11.71870 -11.61933 -11.46647 -11.31444 -11.20254 -11.04140 -10.89183 -10.77202 -10.56739 -10.00074 -9.90363 -8.94679 -7.91406 -5.26007 1.45445 1.48278 1.56722 1.57414 1.95861 2.16081 2.31619 2.46780 3.29933 3.41953 3.53373 3.61822 3.70916 3.72876 3.83487 3.95512 4.17012 4.21636 4.27383 4.28010 4.41365 4.49885 4.50384 4.53902 4.68529 4.75646 4.79987 4.81743 4.83478 4.90858 5.04008 5.06603 5.14793 5.20275 5.21612 5.23678 5.25559 5.31481 5.39786 5.44387 5.49416 5.55004 5.58258 5.61864 5.90909 5.94718 6.09165 6.63813 6.88632 7.14972 7.33287 7.58694 7.73573 8.59338 9.26343 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002837 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.156819 B = 9868.725503 C =10364.981460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.168 3.832 3 H 0.060 0.940 4 N -0.699 5.699 5 C 0.518 3.482 6 O -0.585 6.585 7 C 0.196 3.804 8 N -0.720 5.720 9 C 0.697 3.303 10 N -0.846 5.846 11 O -0.627 6.627 12 C -0.112 4.112 13 C -0.106 4.106 14 C -0.120 4.120 15 C -0.109 4.109 16 C -0.119 4.119 17 C -0.114 4.114 18 C 0.133 3.867 19 N -0.641 5.641 20 C -0.231 4.231 21 H 0.089 0.911 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.983 3.017 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.163 3.837 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.406 0.594 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.419 0.581 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.033 0.967 49 H 0.248 0.752 50 H 0.010 0.990 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -12.095 26.342 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.062 3.938 3 H 0.078 0.922 4 N -0.349 5.349 5 C 0.304 3.696 6 O -0.464 6.464 7 C 0.105 3.895 8 N -0.381 5.381 9 C 0.395 3.605 10 N -0.415 5.415 11 O -0.506 6.506 12 C -0.151 4.151 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.157 4.157 17 C -0.133 4.133 18 C 0.008 3.992 19 N -0.367 5.367 20 C -0.359 4.359 21 H 0.107 0.893 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.811 3.189 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.191 1.191 28 C 0.037 3.963 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.242 0.758 33 H 0.258 0.742 34 H 0.246 0.754 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.027 0.973 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.418 -10.468 25.940 28.181 hybrid contribution 0.081 -0.421 -1.318 1.386 sum 3.499 -10.889 24.622 27.149 Atomic orbital electron populations 1.21930 0.95138 1.01935 1.01116 1.20614 0.94019 0.95748 0.83370 0.92194 1.45738 1.66296 1.14046 1.08776 1.21270 0.77115 0.86327 0.84872 1.90656 1.50956 1.20285 1.84541 1.20194 0.96615 0.80795 0.91861 1.44990 1.05898 1.07046 1.80188 1.16255 0.82980 0.83953 0.77357 1.42784 1.13051 1.05454 1.80217 1.91040 1.51297 1.49892 1.58417 1.21667 1.00420 0.99470 0.93576 1.21446 0.96245 1.00774 0.95866 1.21587 0.94337 1.01239 0.98617 1.21526 1.01037 1.00024 0.92004 1.21847 0.88806 1.03387 1.01646 1.23297 0.96985 0.99969 0.93095 1.22433 0.94134 0.98745 0.83895 1.45943 1.20623 1.68950 1.01146 1.19380 1.00627 1.32573 0.83315 0.89293 1.25712 0.98348 1.01354 1.00848 1.70030 1.18632 1.47314 1.24344 0.85017 0.78242 0.77015 0.78671 1.20870 1.22349 1.19144 1.21993 0.89375 0.93282 0.91682 0.91876 0.91973 0.94154 0.75837 0.74208 0.75423 0.74862 0.91994 0.93325 0.91133 0.91820 0.89926 0.92423 0.89667 0.89548 0.89272 0.90736 0.88032 0.92000 0.94895 0.94273 0.97262 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.48 71.98 0.68 -4.22 16 2 C 0.17 5.78 2.30 44.99 0.10 5.89 16 3 H 0.06 2.39 7.50 -2.39 -0.02 2.37 16 4 N -0.70 -19.78 4.66 -442.53 -2.06 -21.85 16 5 C 0.52 15.79 4.98 87.66 0.44 16.23 16 6 O -0.59 -23.53 15.80 -3.06 -0.05 -23.58 16 7 C 0.20 3.95 0.60 2.86 0.00 3.95 16 8 N -0.72 -9.66 3.36 -441.44 -1.48 -11.14 16 9 C 0.70 12.95 7.88 179.06 1.41 14.36 16 10 N -0.85 -7.72 8.88 -184.75 -1.64 -9.36 16 11 O -0.63 -19.26 14.52 -3.99 -0.06 -19.31 16 12 C -0.11 -2.54 4.09 30.60 0.13 -2.41 16 13 C -0.11 -1.49 5.77 30.59 0.18 -1.32 16 14 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 15 C -0.11 -0.85 5.75 30.59 0.18 -0.67 16 16 C -0.12 -1.70 4.78 30.60 0.15 -1.56 16 17 C -0.11 -4.21 3.52 -10.37 -0.04 -4.25 16 18 C 0.13 5.26 8.13 83.18 0.68 5.94 16 19 N -0.64 -33.40 3.78 -737.93 -2.79 -36.19 16 20 C -0.23 -13.06 10.75 84.03 0.90 -12.15 16 21 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 23 N -0.95 -58.86 11.50 21.65 0.25 -58.62 16 24 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.16 8.04 6.98 83.26 0.58 8.62 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 9.32 7.77 -92.71 -0.72 8.60 16 33 H 0.42 2.22 7.24 -92.71 -0.67 1.55 16 34 H 0.41 0.60 8.85 -92.71 -0.82 -0.22 16 35 H 0.42 3.78 8.93 -92.71 -0.83 2.95 16 36 H 0.06 1.60 7.87 -2.39 -0.02 1.59 16 37 H 0.05 1.44 6.58 -2.39 -0.02 1.43 16 38 H 0.07 0.86 7.60 -2.38 -0.02 0.84 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.31 6.80 -2.39 -0.02 0.29 16 43 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 47 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.03 1.32 8.10 -2.39 -0.02 1.30 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 50 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 51 H 0.04 2.31 7.11 -2.39 -0.02 2.29 16 Total: -1.00 -84.33 397.84 -1.84 -86.18 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -2.07 Total: 22.12 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.03 Total: 23.85 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -7.73 Total: -137.15 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.11 Total: -42.90 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -84.33 -1.84 -86.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330055177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.532 kcal (2) G-P(sol) polarization free energy of solvation -84.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds