Wall clock time and date at job start Tue Mar 31 2020 22:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00029 * 2 1 4 4 C 1.52999 * 109.47336 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47092 * 65.00094 * 4 3 2 6 6 C 1.42895 * 113.99938 * 179.97438 * 5 4 3 7 7 H 1.08996 * 110.78497 * 328.20685 * 6 5 4 8 8 C 1.54593 * 110.72160 * 91.45601 * 6 5 4 9 9 C 1.53999 * 105.13907 * 140.31503 * 8 6 5 10 10 N 1.47900 * 107.06073 * 1.22408 * 9 8 6 11 11 C 1.38573 * 111.00032 * 214.15922 * 10 9 8 12 12 N 1.31217 * 126.47903 * 36.04184 * 11 10 9 13 13 N 1.28529 * 109.86440 * 180.02562 * 12 11 10 14 14 C 1.30289 * 110.05061 * 359.97438 * 13 12 11 15 15 C 1.50706 * 126.34475 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47080 * 59.96086 * 15 14 13 18 18 C 1.52997 * 109.47146 * 299.95770 * 15 14 13 19 19 C 1.50693 * 109.47320 * 184.99845 * 18 15 14 20 20 H 1.07999 * 120.00038 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00336 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00408 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47149 * 90.00108 * 23 21 19 25 25 H 1.48495 * 109.47319 * 210.00442 * 23 21 19 26 26 H 1.48506 * 109.47290 * 330.00265 * 23 21 19 27 27 N 1.36458 * 126.46979 * 216.06013 * 11 10 9 28 28 C 1.46497 * 127.13529 * 0.24759 * 27 11 10 29 29 C 1.48536 * 105.81772 * 334.66995 * 10 9 8 30 30 H 1.09000 * 109.47445 * 59.99965 * 1 2 3 31 31 H 1.09006 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47323 * 299.99488 * 1 2 3 33 33 H 1.09001 * 109.47017 * 60.00246 * 3 2 1 34 34 H 1.08997 * 109.46945 * 300.00321 * 3 2 1 35 35 H 1.08993 * 109.47281 * 305.00348 * 4 3 2 36 36 H 1.08996 * 109.47048 * 185.00203 * 4 3 2 37 37 H 1.09004 * 110.31155 * 21.40055 * 8 6 5 38 38 H 1.08994 * 110.31198 * 259.22652 * 8 6 5 39 39 H 1.09003 * 109.91778 * 241.87273 * 9 8 6 40 40 H 1.08996 * 110.08500 * 120.67122 * 9 8 6 41 41 H 1.09003 * 109.47148 * 299.99906 * 17 15 14 42 42 H 1.09003 * 109.47667 * 60.00221 * 17 15 14 43 43 H 1.08995 * 109.47243 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.47319 * 305.00559 * 18 15 14 45 45 H 1.09007 * 109.47165 * 64.99979 * 18 15 14 46 46 H 0.96998 * 120.00404 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.46794 * 264.51053 * 28 27 11 48 48 H 1.08994 * 109.47589 * 24.51592 * 28 27 11 49 49 H 1.09001 * 109.47121 * 144.52121 * 28 27 11 50 50 H 1.08997 * 110.66906 * 157.63628 * 29 10 9 51 51 H 1.09006 * 110.66980 * 280.77374 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3822 0.4198 -1.3221 7 1 5.9005 1.2203 -0.7942 8 6 5.8172 -0.9622 -0.7830 9 6 6.9168 -1.4425 -1.7483 10 7 7.1085 -0.3746 -2.7535 11 6 7.4249 -0.9094 -3.9921 12 7 6.9557 -2.0228 -4.5039 13 7 7.4628 -2.2155 -5.6692 14 6 8.2783 -1.2443 -5.9676 15 6 9.0694 -1.1021 -7.2424 16 1 9.6615 -0.1878 -7.2026 17 6 8.1107 -1.0378 -8.4331 18 6 10.0004 -2.3057 -7.4017 19 6 10.8783 -2.1053 -8.6100 20 1 10.7821 -1.2089 -9.2047 21 6 11.8051 -3.0657 -8.9559 22 7 11.9226 -4.1571 -8.2315 23 14 12.8937 -2.8170 -10.4533 24 1 14.1391 -2.1163 -10.0490 25 1 13.2368 -4.1370 -11.0407 26 1 12.1708 -1.9998 -11.4607 27 7 8.2835 -0.3778 -4.9098 28 6 9.0554 0.8611 -4.7850 29 6 5.8226 0.3670 -2.8066 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8508 0.5686 0.8426 36 1 3.9784 2.1766 0.0902 37 1 4.9755 -1.6546 -0.7938 38 1 6.2161 -0.8660 0.2268 39 1 6.6029 -2.3632 -2.2401 40 1 7.8457 -1.6108 -1.2036 41 1 7.5188 -1.9523 -8.4728 42 1 7.4474 -0.1803 -8.3196 43 1 8.6828 -0.9355 -9.3551 44 1 10.6231 -2.4037 -6.5124 45 1 9.4061 -3.2104 -7.5305 46 1 12.5748 -4.8327 -8.4746 47 1 8.5128 1.6769 -5.2627 48 1 9.2039 1.0919 -3.7302 49 1 10.0238 0.7361 -5.2695 50 1 5.9743 1.3726 -3.1988 51 1 5.0906 -0.1745 -3.4060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338613512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:57 Heat of formation + Delta-G solvation = -3.897091 kcal Electronic energy + Delta-G solvation = -29535.989940 eV Core-core repulsion = 25472.462920 eV Total energy + Delta-G solvation = -4063.527020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.61153 -39.65975 -38.36556 -37.00099 -35.31141 -34.48283 -32.39207 -31.64422 -30.41201 -28.86346 -27.85252 -27.18570 -26.89054 -26.59754 -24.07004 -23.14205 -22.84844 -21.85824 -21.25784 -20.42084 -19.05752 -17.80139 -17.09055 -16.91451 -16.57899 -16.22284 -16.07925 -15.77646 -15.56850 -14.86504 -14.76941 -14.53325 -14.19037 -14.02138 -13.74870 -13.46453 -13.18206 -13.03263 -12.85781 -12.69368 -12.32989 -12.26096 -12.15820 -11.80735 -11.76284 -11.72199 -11.47758 -11.29263 -11.06803 -10.93569 -10.82761 -10.68591 -10.47305 -10.34177 -10.10025 -9.92691 -9.89163 -9.80646 -9.61917 -9.11032 -8.99453 -8.36457 -8.25661 -5.99350 -4.03173 2.04606 2.47241 3.14968 3.31750 3.32673 3.36614 3.38898 3.41292 3.89214 4.25427 4.44433 4.44841 4.57558 4.71166 4.74761 4.84150 4.86680 4.91240 4.96547 4.98976 5.04180 5.06670 5.21376 5.24608 5.28207 5.32142 5.35858 5.36430 5.42468 5.48360 5.57510 5.66860 5.72545 5.77407 5.99674 6.05398 6.10941 6.22982 6.29239 6.39309 6.70559 6.71983 6.80755 6.90170 6.93309 7.05862 7.42875 7.63513 7.79718 7.99887 8.35651 9.02414 9.19578 9.60328 11.11671 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.001913 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.420749 B =14630.112368 C =14732.625912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.367 6.367 6 C 0.089 3.911 7 H 0.079 0.921 8 C -0.151 4.151 9 C 0.047 3.953 10 N -0.439 5.439 11 C 0.312 3.688 12 N -0.311 5.311 13 N -0.284 5.284 14 C 0.218 3.782 15 C -0.002 4.002 16 H 0.073 0.927 17 C -0.125 4.125 18 C 0.038 3.962 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.273 1.273 27 N -0.472 5.472 28 C 0.080 3.920 29 C 0.051 3.949 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.014 0.986 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 15.937 19.089 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.285 6.285 6 C 0.030 3.970 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.080 4.080 10 N -0.165 5.165 11 C -0.045 4.045 12 N -0.156 5.156 13 N -0.123 5.123 14 C -0.049 4.049 15 C -0.024 4.024 16 H 0.091 0.909 17 C -0.183 4.183 18 C 0.000 4.000 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.198 1.198 27 N -0.165 5.165 28 C -0.064 4.064 29 C -0.077 4.077 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.032 0.968 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.108 0.892 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.107 14.621 18.987 29.444 hybrid contribution 0.883 1.143 -0.487 1.524 sum -16.225 15.764 18.501 29.224 Atomic orbital electron populations 1.22755 0.80993 1.02998 0.99821 1.87978 1.19648 1.27155 1.95357 1.22567 0.92369 0.85652 1.00876 1.22564 0.93365 0.97436 0.87956 1.87999 1.21061 1.81694 1.37784 1.22891 0.81511 0.96904 0.95703 0.90289 1.22940 0.99099 0.97705 0.99215 1.22860 0.99299 0.93878 0.91950 1.61389 1.31037 1.23228 1.00863 1.22267 0.96652 0.94023 0.91528 1.74469 1.22240 1.14132 1.04729 1.74049 1.10780 1.20705 1.06799 1.25703 0.99655 0.87256 0.92254 1.20015 0.94509 1.02961 0.84879 0.90870 1.21670 0.98095 1.00672 0.97911 1.19112 0.92691 0.91203 0.96995 1.21137 1.18820 1.04763 1.11204 0.92313 1.25008 0.97319 0.95183 0.96785 1.69982 1.35300 1.08623 1.38948 0.86594 0.80810 0.77481 0.83092 1.20777 1.21233 1.19806 1.46193 1.34255 1.21119 1.14907 1.21998 0.96474 0.83347 1.04555 1.23208 0.89017 0.99340 0.96099 0.93974 0.89478 0.94224 0.91836 0.92346 0.92223 0.91631 0.89478 0.90494 0.90240 0.89611 0.92034 0.95000 0.90613 0.96788 0.94924 0.92920 0.90714 0.88905 0.88925 0.89234 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.69 10.67 -40.08 -0.43 -4.12 16 3 C 0.06 0.43 6.32 37.16 0.23 0.67 16 4 C 0.06 0.46 6.19 37.16 0.23 0.69 16 5 O -0.37 -3.83 10.05 -40.08 -0.40 -4.23 16 6 C 0.09 0.84 3.51 -24.87 -0.09 0.75 16 7 H 0.08 0.59 7.89 -51.93 -0.41 0.19 16 8 C -0.15 -1.46 6.69 -25.37 -0.17 -1.63 16 9 C 0.05 0.58 6.63 -2.75 -0.02 0.56 16 10 N -0.44 -5.89 5.28 -170.54 -0.90 -6.79 16 11 C 0.31 5.38 6.69 -318.88 -2.13 3.25 16 12 N -0.31 -6.44 11.06 30.31 0.34 -6.10 16 13 N -0.28 -6.43 12.18 32.99 0.40 -6.03 16 14 C 0.22 4.45 6.58 -154.02 -1.01 3.43 16 15 C 0.00 -0.05 2.71 -91.77 -0.25 -0.30 16 16 H 0.07 1.37 7.08 -51.93 -0.37 1.00 16 17 C -0.13 -2.40 8.99 37.16 0.33 -2.06 16 18 C 0.04 0.98 4.43 -27.89 -0.12 0.86 16 19 C -0.52 -14.18 8.41 -34.44 -0.29 -14.47 16 20 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 23 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 N -0.47 -8.01 3.21 -121.46 -0.39 -8.40 16 28 C 0.08 0.95 10.81 59.85 0.65 1.60 16 29 C 0.05 0.60 6.22 -1.89 -0.01 0.58 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 37 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.45 6.95 -51.93 -0.36 1.09 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 0.95 8.11 -51.93 -0.42 0.52 16 49 H 0.09 1.09 7.48 -51.93 -0.39 0.71 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 LS Contribution 415.17 15.07 6.26 6.26 Total: -1.00 -34.97 415.17 -10.03 -45.00 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.99 Total: -2.59 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.64 Total: -3.19 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.18 Total: -53.37 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.83 Total: -8.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.97 -10.03 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338613512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.101 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds