Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00029 * 2 1 4 4 C 1.52999 * 109.47336 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47092 * 65.00094 * 4 3 2 6 6 C 1.42895 * 113.99938 * 179.97438 * 5 4 3 7 7 H 1.08996 * 110.78497 * 328.20685 * 6 5 4 8 8 C 1.54593 * 110.72160 * 91.45601 * 6 5 4 9 9 C 1.53999 * 105.13907 * 140.31503 * 8 6 5 10 10 N 1.47900 * 107.06073 * 1.22408 * 9 8 6 11 11 C 1.38573 * 111.00032 * 214.15922 * 10 9 8 12 12 N 1.31217 * 126.47903 * 36.04184 * 11 10 9 13 13 N 1.28529 * 109.86440 * 180.02562 * 12 11 10 14 14 C 1.30289 * 110.05061 * 359.97438 * 13 12 11 15 15 C 1.50706 * 126.34475 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47080 * 59.96086 * 15 14 13 18 18 C 1.52997 * 109.47146 * 299.95770 * 15 14 13 19 19 C 1.50693 * 109.47320 * 184.99845 * 18 15 14 20 20 H 1.07999 * 120.00038 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00336 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00408 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47149 * 90.00108 * 23 21 19 25 25 H 1.48495 * 109.47319 * 210.00442 * 23 21 19 26 26 H 1.48506 * 109.47290 * 330.00265 * 23 21 19 27 27 N 1.36458 * 126.46979 * 216.06013 * 11 10 9 28 28 C 1.46497 * 127.13529 * 0.24759 * 27 11 10 29 29 C 1.48536 * 105.81772 * 334.66995 * 10 9 8 30 30 H 1.09000 * 109.47445 * 59.99965 * 1 2 3 31 31 H 1.09006 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47323 * 299.99488 * 1 2 3 33 33 H 1.09001 * 109.47017 * 60.00246 * 3 2 1 34 34 H 1.08997 * 109.46945 * 300.00321 * 3 2 1 35 35 H 1.08993 * 109.47281 * 305.00348 * 4 3 2 36 36 H 1.08996 * 109.47048 * 185.00203 * 4 3 2 37 37 H 1.09004 * 110.31155 * 21.40055 * 8 6 5 38 38 H 1.08994 * 110.31198 * 259.22652 * 8 6 5 39 39 H 1.09003 * 109.91778 * 241.87273 * 9 8 6 40 40 H 1.08996 * 110.08500 * 120.67122 * 9 8 6 41 41 H 1.09003 * 109.47148 * 299.99906 * 17 15 14 42 42 H 1.09003 * 109.47667 * 60.00221 * 17 15 14 43 43 H 1.08995 * 109.47243 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.47319 * 305.00559 * 18 15 14 45 45 H 1.09007 * 109.47165 * 64.99979 * 18 15 14 46 46 H 0.96998 * 120.00404 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.46794 * 264.51053 * 28 27 11 48 48 H 1.08994 * 109.47589 * 24.51592 * 28 27 11 49 49 H 1.09001 * 109.47121 * 144.52121 * 28 27 11 50 50 H 1.08997 * 110.66906 * 157.63628 * 29 10 9 51 51 H 1.09006 * 110.66980 * 280.77374 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3822 0.4198 -1.3221 7 1 5.9005 1.2203 -0.7942 8 6 5.8172 -0.9622 -0.7830 9 6 6.9168 -1.4425 -1.7483 10 7 7.1085 -0.3746 -2.7535 11 6 7.4249 -0.9094 -3.9921 12 7 6.9557 -2.0228 -4.5039 13 7 7.4628 -2.2155 -5.6692 14 6 8.2783 -1.2443 -5.9676 15 6 9.0694 -1.1021 -7.2424 16 1 9.6615 -0.1878 -7.2026 17 6 8.1107 -1.0378 -8.4331 18 6 10.0004 -2.3057 -7.4017 19 6 10.8783 -2.1053 -8.6100 20 1 10.7821 -1.2089 -9.2047 21 6 11.8051 -3.0657 -8.9559 22 7 11.9226 -4.1571 -8.2315 23 14 12.8937 -2.8170 -10.4533 24 1 14.1391 -2.1163 -10.0490 25 1 13.2368 -4.1370 -11.0407 26 1 12.1708 -1.9998 -11.4607 27 7 8.2835 -0.3778 -4.9098 28 6 9.0554 0.8611 -4.7850 29 6 5.8226 0.3670 -2.8066 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8508 0.5686 0.8426 36 1 3.9784 2.1766 0.0902 37 1 4.9755 -1.6546 -0.7938 38 1 6.2161 -0.8660 0.2268 39 1 6.6029 -2.3632 -2.2401 40 1 7.8457 -1.6108 -1.2036 41 1 7.5188 -1.9523 -8.4728 42 1 7.4474 -0.1803 -8.3196 43 1 8.6828 -0.9355 -9.3551 44 1 10.6231 -2.4037 -6.5124 45 1 9.4061 -3.2104 -7.5305 46 1 12.5748 -4.8327 -8.4746 47 1 8.5128 1.6769 -5.2627 48 1 9.2039 1.0919 -3.7302 49 1 10.0238 0.7361 -5.2695 50 1 5.9743 1.3726 -3.1988 51 1 5.0906 -0.1745 -3.4060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338613512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -26.293514 kcal Electronic energy + Delta-G solvation = -29536.961122 eV Core-core repulsion = 25472.462920 eV Total energy + Delta-G solvation = -4064.498201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.06119 -40.53615 -39.02981 -37.81190 -37.02537 -35.86674 -34.31375 -32.72247 -31.12292 -29.99002 -29.22562 -28.64601 -28.29488 -27.11787 -25.90416 -24.25101 -23.55130 -23.43646 -22.11787 -21.67609 -20.59992 -18.75498 -18.58374 -17.79918 -17.62821 -17.41814 -17.35484 -16.62435 -16.50077 -16.23319 -15.86474 -15.54312 -15.42856 -15.08520 -14.99543 -14.51981 -14.42796 -14.39284 -13.99146 -13.79752 -13.55571 -13.43329 -13.09440 -12.93802 -12.81691 -12.75540 -12.73139 -12.62402 -12.44942 -12.31274 -12.24930 -12.04637 -12.00363 -11.61976 -11.54298 -11.48101 -11.18008 -11.07228 -10.64882 -10.54881 -10.54047 -10.35853 -9.71552 -8.15620 -6.27640 0.66199 1.20727 1.44605 1.46571 1.57359 1.73731 2.39297 2.45169 2.88492 2.92565 3.18433 3.32486 3.47055 3.63776 3.75465 3.91430 4.01534 4.09787 4.14676 4.20379 4.24313 4.31121 4.35198 4.42012 4.44499 4.48392 4.52045 4.55663 4.59170 4.62927 4.66033 4.69442 4.72781 4.82316 4.85779 4.86661 4.92935 5.00404 5.03729 5.08897 5.16738 5.32927 5.35973 5.45607 5.48813 5.69165 5.83935 6.12085 6.19179 6.20921 6.32478 6.88307 7.41681 7.69440 8.96906 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.001913 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.420749 B =14630.112368 C =14732.625912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.056 3.944 4 C 0.057 3.943 5 O -0.393 6.393 6 C 0.099 3.901 7 H 0.112 0.888 8 C -0.142 4.142 9 C 0.043 3.957 10 N -0.426 5.426 11 C 0.330 3.670 12 N -0.352 5.352 13 N -0.329 5.329 14 C 0.204 3.796 15 C 0.009 3.991 16 H 0.100 0.900 17 C -0.118 4.118 18 C 0.050 3.950 19 C -0.528 4.528 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.290 1.290 26 H -0.256 1.256 27 N -0.467 5.467 28 C 0.069 3.931 29 C 0.049 3.951 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.076 0.924 44 H -0.021 1.021 45 H -0.012 1.012 46 H 0.261 0.739 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.094 0.906 50 H 0.110 0.890 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.591 19.795 19.968 32.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.019 4.019 5 O -0.312 6.312 6 C 0.040 3.960 7 H 0.130 0.870 8 C -0.180 4.180 9 C -0.084 4.084 10 N -0.153 5.153 11 C -0.028 4.028 12 N -0.196 5.196 13 N -0.168 5.168 14 C -0.065 4.065 15 C -0.012 4.012 16 H 0.118 0.882 17 C -0.176 4.176 18 C 0.012 3.988 19 C -0.566 4.566 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.578 5.578 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.216 1.216 26 H -0.180 1.180 27 N -0.159 5.159 28 C -0.072 4.072 29 C -0.078 4.078 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.095 0.905 44 H -0.003 1.003 45 H 0.007 0.993 46 H 0.070 0.930 47 H 0.122 0.878 48 H 0.133 0.867 49 H 0.113 0.887 50 H 0.128 0.872 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.885 18.523 19.875 31.988 hybrid contribution 0.733 -0.035 -0.625 0.963 sum -16.152 18.488 19.251 31.197 Atomic orbital electron populations 1.22882 0.79800 1.03468 1.00845 1.87927 1.21219 1.28964 1.95603 1.22773 0.92340 0.84887 1.02027 1.22835 0.93580 0.98781 0.86697 1.87980 1.21333 1.82295 1.39565 1.22865 0.81743 0.97478 0.93872 0.87014 1.22901 0.97568 0.97627 0.99925 1.22937 1.00879 0.92551 0.92043 1.61660 1.31899 1.22907 0.98819 1.22678 0.95177 0.92758 0.92138 1.74383 1.23991 1.16526 1.04736 1.73935 1.12278 1.22462 1.08175 1.25466 0.99881 0.87996 0.93108 1.19791 0.94187 1.01282 0.85967 0.88173 1.21584 0.97944 1.00926 0.97115 1.18855 0.92566 0.92016 0.95405 1.21579 1.18420 1.05230 1.11372 0.90339 1.26043 0.99132 0.94767 1.00170 1.70160 1.36446 1.09897 1.41279 0.85390 0.78862 0.77373 0.79063 1.19692 1.21637 1.17962 1.46382 1.34056 1.21925 1.13551 1.22437 0.96352 0.81855 1.06545 1.23294 0.87280 0.99342 0.97874 0.93723 0.89430 0.92366 0.89142 0.92617 0.91876 0.88704 0.91060 0.87501 0.93512 0.88415 0.94293 0.91863 0.90538 1.00270 0.99342 0.93007 0.87760 0.86719 0.88723 0.87154 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.73 10.67 -144.35 -1.54 -9.27 16 3 C 0.06 0.68 6.32 71.98 0.45 1.13 16 4 C 0.06 0.67 6.19 71.98 0.45 1.12 16 5 O -0.39 -7.50 10.05 -144.35 -1.45 -8.95 16 6 C 0.10 1.63 3.51 31.80 0.11 1.74 16 7 H 0.11 1.16 7.89 -2.39 -0.02 1.14 16 8 C -0.14 -2.53 6.69 31.47 0.21 -2.32 16 9 C 0.04 1.04 6.63 86.45 0.57 1.62 16 10 N -0.43 -10.93 5.28 -693.47 -3.66 -14.58 16 11 C 0.33 11.44 6.69 260.11 1.74 13.18 16 12 N -0.35 -15.29 11.06 -58.01 -0.64 -15.93 16 13 N -0.33 -15.69 12.18 -49.53 -0.60 -16.30 16 14 C 0.20 8.49 6.58 137.64 0.91 9.40 16 15 C 0.01 0.36 2.71 -11.54 -0.03 0.33 16 16 H 0.10 3.58 7.08 -2.39 -0.02 3.56 16 17 C -0.12 -4.45 8.99 71.98 0.65 -3.81 16 18 C 0.05 2.69 4.43 29.84 0.13 2.82 16 19 C -0.53 -28.94 8.41 25.60 0.22 -28.73 16 20 H 0.08 3.91 7.06 -2.91 -0.02 3.89 16 21 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 22 N -0.94 -58.38 13.29 21.45 0.28 -58.09 16 23 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 27 N -0.47 -15.51 3.21 -538.19 -1.73 -17.24 16 28 C 0.07 1.45 10.81 127.77 1.38 2.84 16 29 C 0.05 1.08 6.22 86.65 0.54 1.62 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.55 8.11 -2.39 -0.02 0.53 16 37 H 0.07 1.52 8.07 -2.38 -0.02 1.50 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.46 6.91 -2.39 -0.02 1.44 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 2.85 6.95 -2.39 -0.02 2.83 16 44 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 45 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 46 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.11 1.93 8.11 -2.39 -0.02 1.91 16 49 H 0.09 2.00 7.48 -2.39 -0.02 1.98 16 50 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.04 1.12 8.00 -2.38 -0.02 1.10 16 Total: -1.00 -81.43 415.17 2.62 -78.81 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.89 Total: 13.20 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 9.04 Total: 2.74 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -6.35 Total: -122.14 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -2.99 Total: -18.21 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -81.43 2.62 -78.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338613512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.521 kcal (2) G-P(sol) polarization free energy of solvation -81.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds